GSE67402: E.coli regulatory changes under long-term starvation
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
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narP | -0.63 | 4.4e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
ytfE Show fit | 21.61 |
iron-sulfur cluster repair protein YtfE |
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fdnGHI Show fit | 15.37 |
formate dehydrogenase N, β subunit formate dehydrogenase N, γ subunit formate dehydrogenase N, α subunit |
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yeaR-yoaG Show fit | 14.05 |
predicted protein conserved protein |
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napFDAGHBC-ccmABCDEFGH Show fit | 13.28 |
ferredoxin-type protein ferredoxin-type protein signal peptide-binding chaperone for NapA periplasmic nitrate reductase, cytochrome c protein holocytochrome c synthetase - thiol:disulfide oxidoreductase CcmH large subunit of periplasmic nitrate reductase, molybdoprotein membrane anchored periplasmic heme chaperone CcmE ABC complex for formation and release of holoCcmE - membrane subunit CcmD holocytochrome c synthetase - thiol:disulfide oxidoreductase CcmG holocytochrome c synthetase - CcmF subunit ABC complex for formation and release of holoCcmE - ATP binding subunit ABC complex for formation and release of holoCcmE - membrane subunit CcmC ABC complex for formation and release of holoCcmE - membrane subunit CcmB ferredoxin-type protein subunit of periplasmic nitrate reductase, cytochrome c550 protein |
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hcp-hcr Show fit | 12.80 |
NADH oxidoreductase hybrid-cluster protein |
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ydhYVWXUT Show fit | 5.97 |
predicted 4Fe-4S ferredoxin-type protein predicted 4Fe-4S ferredoxin-type protein predicted protein predicted oxidoreductase predicted cytochrome conserved protein |
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norVW Show fit | 2.86 |
NADH:flavorubredoxin reductase flavorubredoxin |
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hyaABCDEF Show fit | 2.78 |
hydrogenase 1, large subunit hydrogenase 1, b-type cytochrome subunit hydrogenase 1, small subunit protein involved in nickel incorporation into hydrogenase 1 proteins protein involved in processing of HyaA and HyaB proteins protein involved in quality control of HyaA |
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ydeP Show fit | 2.31 |
acid resistance protein |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
5.4 | 21.6 | GO:0030091 | protein repair(GO:0030091) |
5.2 | 15.7 | GO:0046209 | nitric oxide metabolic process(GO:0046209) nitric oxide catabolic process(GO:0046210) |
4.4 | 13.3 | GO:0051223 | heme transport(GO:0015886) regulation of protein localization(GO:0032880) regulation of protein transport(GO:0051223) regulation of establishment of protein localization(GO:0070201) |
3.3 | 13.2 | GO:0015942 | formate metabolic process(GO:0015942) |
0.6 | 2.8 | GO:0016485 | fermentation(GO:0006113) protein processing(GO:0016485) |
0.3 | 2.3 | GO:0010447 | response to acidic pH(GO:0010447) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 19.5 | GO:0005829 | cytosol(GO:0005829) |
1.4 | 15.4 | GO:0071575 | integral component of external side of plasma membrane(GO:0071575) |
4.4 | 13.3 | GO:0031235 | intrinsic component of the cytoplasmic side of the plasma membrane(GO:0031235) |
0.1 | 5.8 | GO:0030288 | outer membrane-bounded periplasmic space(GO:0030288) |
0.9 | 2.8 | GO:0031237 | intrinsic component of external side of plasma membrane(GO:0031233) intrinsic component of periplasmic side of plasma membrane(GO:0031237) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.6 | 24.5 | GO:0005506 | iron ion binding(GO:0005506) |
5.4 | 16.1 | GO:0005048 | signal sequence binding(GO:0005048) |
3.3 | 13.2 | GO:0030151 | molybdenum ion binding(GO:0030151) |
1.3 | 12.8 | GO:0016684 | peroxidase activity(GO:0004601) oxidoreductase activity, acting on peroxide as acceptor(GO:0016684) |