GSE67402: E.coli regulatory changes under long-term starvation

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
nhaR Links RegulonDB EcoCyc	nhaR	NhaR transcriptional activator

Gene	Promoter	Pearson corr. coef.	P-value	Plot
nhaR		0.33	9.5e-02	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
osmC Show fit	2.35		osmC Links RegulonDB EcoCyc Show fit	osmotically inducible peroxiredoxin
pgaABCD Show fit	1.45		pgaA Links RegulonDB EcoCyc Show fit pgaB Links RegulonDB EcoCyc Show fit pgaC Links RegulonDB EcoCyc Show fit pgaD Links RegulonDB EcoCyc Show fit	partially N-deacetylated poly-β-1,6-N-acetyl-D-glucosamine outer membrane porin poly-β-1,6-N-acetyl-D-glucosamine N-deacetylase poly-β-1,6-N-acetyl-D-glucosamine synthase - PgaC subunit poly-β-1,6-N-acetyl-D-glucosamine synthase - PgaD subunit
nhaAR Show fit	0.59		nhaA Links RegulonDB EcoCyc Show fit nhaR Links RegulonDB EcoCyc Show fit	Na+:H+ antiporter NhaA NhaR transcriptional activator

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.5	1.5	GO:0043708	cell adhesion involved in biofilm formation(GO:0043708)
0.3	0.6	GO:0009651	response to salt stress(GO:0009651)
0.3	2.4	GO:0006972	hyperosmotic response(GO:0006972)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.2	1.5	GO:0031246	intrinsic component of periplasmic side of cell outer membrane(GO:0031246)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.8	2.4	GO:0051920	peroxiredoxin activity(GO:0051920)
0.4	1.5	GO:0008375	acetylglucosaminyltransferase activity(GO:0008375)
0.1	0.6	GO:0015491	phospholipid binding(GO:0005543) solute:proton antiporter activity(GO:0015299) cation:cation antiporter activity(GO:0015491)