GSE67402: E.coli regulatory changes under long-term starvation

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
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Gene Symbol	Gene ID	Gene Info
nrdR Links RegulonDB EcoCyc	nrdR	NrdR transcriptional repressor

Gene	Promoter	Pearson corr. coef.	P-value	Plot
nrdR		0.39	4.7e-02	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
nrdAB-yfaE Show fit	3.64		nrdA Links RegulonDB EcoCyc Show fit nrdB Links RegulonDB EcoCyc Show fit yfaE Links RegulonDB EcoCyc Show fit	ribonucleoside diphosphate reductase 1, α subunit ribonucleoside diphosphate reductase 1, β subunit, ferritin-like 2Fe-2S cluster-containing protein involved in diferric-tyrosyl radical cofactor maintenance
nrdHIEF Show fit	3.13		nrdH Links RegulonDB EcoCyc Show fit nrdI Links RegulonDB EcoCyc Show fit nrdE Links RegulonDB EcoCyc Show fit nrdF Links RegulonDB EcoCyc Show fit	glutaredoxin-like protein flavodoxin involved in dimanganese-tyrosyl radical cofactor maintenance for ribonucleotide reductase ribonucleoside-diphosphate reductase 2, α subunit ribonucleoside-diphosphate reductase 2, β subunit

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
1.1	6.4	GO:0009263	deoxyribonucleotide biosynthetic process(GO:0009263)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.3	6.8	GO:1990204	oxidoreductase complex(GO:1990204)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
2.1	6.4	GO:0061731	ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor(GO:0004748) oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor(GO:0016728) ribonucleoside-diphosphate reductase activity(GO:0061731)