GSE67402: E.coli regulatory changes under long-term starvation
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
glnG | 0.96 | 3.0e-15 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
glnA Show fit | 128.00 |
glutamine synthetase |
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glnALG Show fit | 116.07 |
NtrB glutamine synthetase NtrC transcriptional dual regulator |
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glnHPQ Show fit | 57.06 |
L-glutamine ABC transporter - periplasmic binding protein L-glutamine ABC transporter - ATP binding subunit L-glutamine ABC transporter - membrane subunit |
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argT-hisJQMP Show fit | 42.33 |
lysine/arginine/ornithine ABC transporter / histidine ABC transporter - membrane subunit lysine / arginine / ornithine ABC transporter / histidine ABC transporter - ATP binding subunit lysine / arginine / ornithine ABC transporter - periplasmic binding protein lysine / arginine / ornithine ABC transporter / histidine ABC transporter - membrane subunit histidine ABC transporter - periplasmic binding protein |
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glnK-amtB Show fit | 35.45 |
nitrogen regulatory protein GlnK ammonia / ammonium transporter |
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relA Show fit | 22.17 |
GDP pyrophosphokinase/GTP pyrophosphokinase |
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potFGHI Show fit | 22.12 |
putrescine ABC transporter - membrane subunit putrescine ABC transporter - membrane subunit putrescine ABC transporter - ATP binding subunit putrescine ABC transporter - periplasmic binding protein |
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ddpXABCDF Show fit | 17.78 |
D-Ala-D-Ala dipeptidase YddP YddO YddS YddR YddQ |
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yhdWXYZ Show fit | 15.31 |
putative transport protein, ABC superfamily - periplasmic binding protein putative transport protein, ABC superfamily - membrane component putative transport protein, ABC superfamily - ATP-binding component putative transport protein, ABC superfamily - membrane component |
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glnLG Show fit | 11.21 |
NtrC transcriptional dual regulator NtrB |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
81.4 | 244.1 | GO:0019676 | ammonia assimilation cycle(GO:0019676) |
5.2 | 57.1 | GO:0015804 | neutral amino acid transport(GO:0015804) |
10.6 | 42.3 | GO:0097638 | L-arginine import(GO:0043091) L-amino acid import(GO:0043092) arginine import(GO:0090467) L-arginine import across plasma membrane(GO:0097638) L-arginine import into cell(GO:1902765) L-arginine transmembrane transport(GO:1903400) L-lysine transmembrane transport(GO:1903401) arginine transmembrane transport(GO:1903826) |
11.8 | 35.5 | GO:0006808 | regulation of nitrogen utilization(GO:0006808) |
7.4 | 22.2 | GO:0034035 | guanosine tetraphosphate metabolic process(GO:0015969) purine ribonucleoside bisphosphate metabolic process(GO:0034035) |
7.4 | 22.1 | GO:0015846 | organic cation transport(GO:0015695) polyamine transport(GO:0015846) putrescine transport(GO:0015847) |
1.8 | 17.8 | GO:0006024 | aminoglycan biosynthetic process(GO:0006023) glycosaminoglycan biosynthetic process(GO:0006024) peptidoglycan biosynthetic process(GO:0009252) |
0.4 | 11.2 | GO:0000160 | phosphorelay signal transduction system(GO:0000160) protein autophosphorylation(GO:0046777) |
9.4 | 9.4 | GO:0019740 | nitrogen utilization(GO:0019740) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 322.0 | GO:0016020 | membrane(GO:0016020) |
2.8 | 121.5 | GO:0043190 | ATP-binding cassette (ABC) transporter complex(GO:0043190) ATPase dependent transmembrane transport complex(GO:0098533) ATPase complex(GO:1904949) |
2.8 | 22.2 | GO:0005618 | cell wall(GO:0005618) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
61.0 | 244.1 | GO:0016211 | ammonia ligase activity(GO:0016211) |
6.3 | 57.1 | GO:0015175 | neutral amino acid transmembrane transporter activity(GO:0015175) |
10.6 | 42.3 | GO:0015181 | arginine transmembrane transporter activity(GO:0015181) L-lysine transmembrane transporter activity(GO:0015189) |
5.9 | 35.5 | GO:0008519 | ammonium transmembrane transporter activity(GO:0008519) |
7.4 | 22.2 | GO:0008728 | GTP diphosphokinase activity(GO:0008728) guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity(GO:0008893) diphosphoric monoester hydrolase activity(GO:0016794) |
0.3 | 22.1 | GO:0005524 | ATP binding(GO:0005524) |
4.4 | 17.8 | GO:0008235 | metalloexopeptidase activity(GO:0008235) |
0.9 | 11.2 | GO:0004721 | phosphoprotein phosphatase activity(GO:0004721) |
3.1 | 9.4 | GO:0004497 | monooxygenase activity(GO:0004497) pyrimidine nucleobase transmembrane transporter activity(GO:0005350) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
7.4 | 22.2 | PID ANGIOPOIETIN RECEPTOR PATHWAY | Angiopoietin receptor Tie2-mediated signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
7.4 | 22.2 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |