GSE67402: E.coli regulatory changes under long-term starvation
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
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pdhR | 0.95 | 6.3e-14 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
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fecABCDE Show fit | 20.02 |
ferric citrate ABC transporter - membrane subunit ferric citrate ABC transporter - ATP binding subunit ferric citrate ABC transporter - periplasmic binding protein ferric citrate ABC transporter - membrane subunit ferric citrate outer membrane porin FecA |
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ndh Show fit | 16.68 |
NADH:quinone oxidoreductase II |
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pdhR-aceEF-lpd Show fit | 14.91 |
PdhR DNA-binding transcriptional dual regulator lipoamide dehydrogenase pyruvate dehydrogenase, E2 subunit subunit of E1p component of pyruvate dehydrogenase complex |
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hemL Show fit | 13.03 |
glutamate-1-semialdehyde aminotransferase |
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grcA Show fit | 9.77 |
stress-induced alternate pyruvate formate-lyase subunit |
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cyoABCDE Show fit | 8.37 |
cytochrome bo terminal oxidase subunit II cytochrome bo terminal oxidase subunit III cytochrome bo terminal oxidase subunit I heme O synthase cytochrome bo terminal oxidase subunit IV |
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mraZ-rsmH-ftsLI-murEF-mraY-murD-ftsW-murGC-ddlB-ftsQAZ-lpxC Show fit | 1.37 |
UDP-N-acetylmuramate-alanine ligase MraZ DNA-binding transcriptional repressor essential cell division protein FtsA phospho-N-acetylmuramoyl-pentapeptide transferase 16S rRNA m4C1402 methyltransferase essential cell division protein FtsL UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase UDP-N-acetylmuramoylalanyl-D-glutamate 2,6-diaminopimelate ligase essential cell division protein FtsI; penicillin-binding protein 3 N-acetylglucosaminyl transferase essential cell division protein FtsW; lipid II flippase D-alanyl-D-alanine-adding enzyme essential cell division protein FtsQ UDP-3-O-acyl-N-acetylglucosamine deacetylase D-alanine-D-alanine ligase B essential cell division protein FtsZ |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
6.3 | 25.1 | GO:0019646 | aerobic electron transport chain(GO:0019646) |
2.9 | 20.0 | GO:0072512 | ferric iron transport(GO:0015682) trivalent inorganic cation transport(GO:0072512) |
5.0 | 14.9 | GO:0035383 | acyl-CoA metabolic process(GO:0006637) glycine decarboxylation via glycine cleavage system(GO:0019464) thioester metabolic process(GO:0035383) |
2.6 | 13.0 | GO:0006782 | protoporphyrinogen IX biosynthetic process(GO:0006782) |
2.0 | 9.8 | GO:0006567 | threonine catabolic process(GO:0006567) |
0.5 | 1.4 | GO:0015835 | peptidoglycan transport(GO:0015835) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.5 | 31.6 | GO:1990204 | oxidoreductase complex(GO:1990204) |
1.7 | 20.0 | GO:0055052 | ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing(GO:0055052) |
2.8 | 8.4 | GO:0070069 | cytochrome complex(GO:0070069) |
0.1 | 1.4 | GO:0032153 | cell division site(GO:0032153) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.9 | 20.0 | GO:0015603 | iron chelate transmembrane transporter activity(GO:0015603) |
5.6 | 16.7 | GO:0050136 | NADH dehydrogenase (ubiquinone) activity(GO:0008137) NADH dehydrogenase (quinone) activity(GO:0050136) |
3.0 | 14.9 | GO:0031405 | lipoic acid binding(GO:0031405) |
0.8 | 13.0 | GO:0016866 | intramolecular transferase activity(GO:0016866) |
2.4 | 9.8 | GO:0008861 | formate C-acetyltransferase activity(GO:0008861) |
2.8 | 8.4 | GO:0048039 | ubiquinone binding(GO:0048039) |
0.5 | 1.4 | GO:0008963 | penicillin binding(GO:0008658) UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity(GO:0008759) phospho-N-acetylmuramoyl-pentapeptide-transferase activity(GO:0008963) peptidoglycan transporter activity(GO:0015647) |