GSE67402: E.coli regulatory changes under long-term starvation

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
prpR Links RegulonDB EcoCyc	prpR	PrpR DNA-binding transcriptional dual regulator

Gene	Promoter	Pearson corr. coef.	P-value	Plot
prpR		-0.38	4.9e-02	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
prpBCDE Show fit	10.31		prpD Links RegulonDB EcoCyc Show fit prpE Links RegulonDB EcoCyc Show fit prpB Links RegulonDB EcoCyc Show fit prpC Links RegulonDB EcoCyc Show fit	2-methylcitrate dehydratase propionyl-CoA synthetase 2-methylisocitrate lyase 2-methylcitrate synthase
prpR Show fit	7.85		prpR Links RegulonDB EcoCyc Show fit	PrpR DNA-binding transcriptional dual regulator

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
3.4	10.3	GO:0019626	short-chain fatty acid catabolic process(GO:0019626)
0.1	7.9	GO:0051254	positive regulation of transcription, DNA-templated(GO:0045893) positive regulation of RNA metabolic process(GO:0051254) positive regulation of RNA biosynthetic process(GO:1902680) positive regulation of nucleic acid-templated transcription(GO:1903508)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
2.6	10.3	GO:0046912	transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer(GO:0046912)
0.1	7.9	GO:0003700	transcription factor activity, sequence-specific DNA binding(GO:0003700)