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GSE67402: E.coli regulatory changes under long-term starvation
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Results for PspF
Z-value: 0.94
Transcription factors associated with PspF
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
pspF
|
pspF | PspF DNA-binding transcriptional dual regulator |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| pspF | -0.41 | 3.2e-02 | Click! |
Activity profile of PspF motif
Sorted Z-values of PspF motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| pspG | 17.07 |
pspG
|
phage shock protein G |
|
| pspABCDE | 13.94 |
pspE
pspD
pspC
pspB
pspA
|
thiosulfate sulfurtransferase peripheral inner membrane phage-shock protein PspC transcriptional regulator; toxin of a PspC-PspB toxin-antitoxin pair stimulates PspC-mediated transcriptional activation of the psp operon; antitoxin of a PspC-PspB toxin-antitoxin pair regulatory protein for the phage shock operon, protects membrane integrity |
|
| pspF | 4.69 |
pspF
|
PspF DNA-binding transcriptional dual regulator |
Network of associatons between targets according to the STRING database.
First level regulatory network of PspF
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 7.8 | 31.0 | GO:0043207 | response to biotic stimulus(GO:0009607) response to virus(GO:0009615) response to external biotic stimulus(GO:0043207) response to other organism(GO:0051707) |
| 0.1 | 4.7 | GO:0051254 | positive regulation of transcription, DNA-templated(GO:0045893) positive regulation of RNA metabolic process(GO:0051254) positive regulation of RNA biosynthetic process(GO:1902680) positive regulation of nucleic acid-templated transcription(GO:1903508) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.2 | 13.9 | GO:0031234 | extrinsic component of cytoplasmic side of plasma membrane(GO:0031234) |
| 0.0 | 17.1 | GO:0005886 | plasma membrane(GO:0005886) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 3.5 | 13.9 | GO:0005543 | phospholipid binding(GO:0005543) |
| 0.1 | 4.7 | GO:0043565 | sequence-specific DNA binding(GO:0043565) |