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GSE67402: E.coli regulatory changes under long-term starvation

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Results for RcsB-BglJ

Z-value: 1.39

Transcription factors associated with RcsB-BglJ

Gene Symbol Gene ID Gene Info
rcsB
rcsB RcsB
bglJ
bglJ BglJ DNA-binding transcriptional regulator

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
bglJ-0.741.1e-05Click!
yjjQ-0.741.1e-05Click!
rcsB0.106.1e-01Click!

Activity profile of RcsB-BglJ motif

Sorted Z-values of RcsB-BglJ motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
ykiA 18.14
ykiA
predicted protein
ygiZ 15.05
ygiZ
conserved inner membrane protein
molR_1 14.12
molR_1
molybdate metabolism regulator (interrupted)
yidL 14.01
yidL
predicted DNA-binding transcriptional regulator
yqhG 13.96
yqhG
conserved protein
ynbABCD 10.18
ynbC
ynbB
ynbA
ynbD
predicted hydrolase
predicted CDP-diglyceride synthase
predicted inner membrane protein
predicted phosphatase, inner membrane protein
ynjI 3.85
ynjI
predicted inner membrane protein

Network of associatons between targets according to the STRING database.

First level regulatory network of RcsB-BglJ

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.8 10.2 GO:0009273 peptidoglycan-based cell wall biogenesis(GO:0009273)
0.1 11.2 GO:0006351 transcription, DNA-templated(GO:0006351) nucleic acid-templated transcription(GO:0097659)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 24.4 GO:0005886 plasma membrane(GO:0005886)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.9 10.2 GO:0016780 phosphotransferase activity, for other substituted phosphate groups(GO:0016780)