GSE67402: E.coli regulatory changes under long-term starvation
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
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rpoE | 0.92 | 2.1e-11 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
yraP Show fit | 42.96 |
lipoprotein |
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fusA-tufA Show fit | 35.77 |
elongation factor Tu elongation factor G |
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bamA-skp-lpxD-fabZ-lpxAB-rnhB-dnaE Show fit | 22.99 |
periplasmic chaperone RNAse HII, degrades RNA of DNA-RNA hybrids UDP-N-acetylglucosamine acyltransferase lipid A disaccharide synthase UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase Outer Membrane Protein Assembly Complex - BamA subunit 3-hydroxy-acyl-[acyl-carrier-protein] dehydratase DNA polymerase III, α subunit |
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bamD Show fit | 22.94 |
Outer Membrane Protein Assembly Complex - BamD subunit |
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malQ Show fit | 20.83 |
amylomaltase/amylomaltase/amylomaltase |
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ybaB-recR Show fit | 19.32 |
conserved DNA-binding protein recombination and repair |
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bamA Show fit | 19.15 |
Outer Membrane Protein Assembly Complex - BamA subunit |
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fkpA Show fit | 19.04 |
peptidyl-prolyl cis-trans isomerase; in protein folding |
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bamB-der Show fit | 17.73 |
50S ribosomal subunit stability factor Outer Membrane Protein Assembly Complex - BamB subunit |
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skp-lpxD-fabZ-lpxA Show fit | 17.64 |
UDP-N-acetylglucosamine acyltransferase UDP-3-O-(R-3-hydroxymyristoyl)-glucosamine N-acyltransferase periplasmic chaperone 3-hydroxy-acyl-[acyl-carrier-protein] dehydratase |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
14.3 | 100.4 | GO:0051205 | protein insertion into membrane(GO:0051205) |
9.6 | 48.0 | GO:0043165 | cell envelope organization(GO:0043163) Gram-negative-bacterium-type cell outer membrane assembly(GO:0043165) membrane biogenesis(GO:0044091) membrane assembly(GO:0071709) |
2.8 | 28.3 | GO:0006643 | membrane lipid metabolic process(GO:0006643) glycolipid metabolic process(GO:0006664) glycolipid biosynthetic process(GO:0009247) membrane lipid biosynthetic process(GO:0046467) lipooligosaccharide metabolic process(GO:1901269) lipooligosaccharide biosynthetic process(GO:1901271) |
6.3 | 25.4 | GO:0015920 | lipopolysaccharide transport(GO:0015920) |
4.8 | 24.1 | GO:0006515 | misfolded or incompletely synthesized protein catabolic process(GO:0006515) |
2.6 | 20.8 | GO:0046352 | disaccharide catabolic process(GO:0046352) |
3.9 | 19.3 | GO:0071897 | DNA synthesis involved in DNA repair(GO:0000731) DNA biosynthetic process(GO:0071897) |
6.3 | 19.0 | GO:0042026 | protein refolding(GO:0042026) |
3.5 | 10.6 | GO:0031123 | RNA 3'-end processing(GO:0031123) |
3.5 | 10.4 | GO:0009244 | lipopolysaccharide core region biosynthetic process(GO:0009244) lipopolysaccharide core region metabolic process(GO:0046401) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 139.4 | GO:0005829 | cytosol(GO:0005829) |
1.0 | 100.9 | GO:0030288 | outer membrane-bounded periplasmic space(GO:0030288) |
14.2 | 99.4 | GO:1990063 | Bam protein complex(GO:1990063) |
0.2 | 22.0 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
1.1 | 17.3 | GO:0022627 | small ribosomal subunit(GO:0015935) cytosolic small ribosomal subunit(GO:0022627) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 67.2 | GO:0005515 | protein binding(GO:0005515) |
13.5 | 40.6 | GO:0008693 | 3-hydroxydecanoyl-[acyl-carrier-protein] dehydratase activity(GO:0008693) 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity(GO:0019171) 3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity(GO:0047451) |
7.8 | 31.4 | GO:0050570 | 4-hydroxythreonine-4-phosphate dehydrogenase activity(GO:0050570) |
6.3 | 25.4 | GO:0032403 | lipopolysaccharide transmembrane transporter activity(GO:0015221) lipopolysaccharide-transporting ATPase activity(GO:0015437) protein complex binding(GO:0032403) |
3.4 | 24.1 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
6.9 | 20.8 | GO:0004133 | glycogen debranching enzyme activity(GO:0004133) |
0.3 | 19.3 | GO:0003677 | DNA binding(GO:0003677) |
3.5 | 17.7 | GO:0097216 | guanosine tetraphosphate binding(GO:0097216) |
5.7 | 17.0 | GO:0045152 | antisigma factor binding(GO:0045152) |
1.7 | 15.5 | GO:0016410 | N-acyltransferase activity(GO:0016410) |