GSE67402: E.coli regulatory changes under long-term starvation
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
fliFGHIJK Show fit | 17.70 |
flagellum-specific ATP synthase FliI flagellar biosynthesis protein FliH flagellar hook-length control protein FliK flagellar biosynthesis protein FliJ flagellar motor switch protein FliG flagellar M-ring protein FliF; basal-body MS(membrane and supramembrane)-ring and collar protein |
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fliLMNOPQR Show fit | 16.93 |
flagellar biosynthesis protein FliQ flagellar biosynthesis protein FliP flagellar biosynthesis protein FliR flagellar motor switch protein FliM flagellar protein FliL flagellar biosynthesis protein FliO flagellar motor switch protein FliN |
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fliDST Show fit | 16.92 |
flagellar biosynthesis protein FliT flagellar cap protein FliD; filament capping protein; enables filament assembly flagellar biosynthesis protein FliS |
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ygbK Show fit | 15.34 |
conserved protein |
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pdeH Show fit | 14.57 |
c-di-GMP phosphodiesterase |
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yhiL Show fit | 14.36 |
predicted protein |
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yjcS Show fit | 12.28 |
alkyl sulfatase |
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fliC Show fit | 10.58 |
flagellar biosynthesis; flagellin, filament structural protein |
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ycgR Show fit | 10.42 |
molecular brake that regulates flagellar motility in response to c-di-GMP |
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tsr Show fit | 10.21 |
|
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Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
3.3 | 63.5 | GO:0001539 | cilium or flagellum-dependent cell motility(GO:0001539) bacterial-type flagellum-dependent cell motility(GO:0071973) archaeal or bacterial-type flagellum-dependent cell motility(GO:0097588) |
6.3 | 25.2 | GO:0050918 | positive chemotaxis(GO:0050918) |
1.5 | 12.3 | GO:0071466 | xenobiotic metabolic process(GO:0006805) response to xenobiotic stimulus(GO:0009410) cellular response to xenobiotic stimulus(GO:0071466) |
1.0 | 7.7 | GO:0007059 | chromosome segregation(GO:0007059) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
12.9 | 51.5 | GO:0044463 | bacterial-type flagellum part(GO:0044461) cell projection part(GO:0044463) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.9 | 14.6 | GO:0071111 | cyclic-guanylate-specific phosphodiesterase activity(GO:0071111) |
0.2 | 12.2 | GO:0016788 | hydrolase activity, acting on ester bonds(GO:0016788) |
2.1 | 10.4 | GO:0030551 | cyclic nucleotide binding(GO:0030551) cyclic-di-GMP binding(GO:0035438) |
0.3 | 8.3 | GO:0004871 | signal transducer activity(GO:0004871) |
0.0 | 3.5 | GO:0042802 | identical protein binding(GO:0042802) |
0.3 | 2.2 | GO:0004721 | phosphoprotein phosphatase activity(GO:0004721) |