GSE67402: E.coli regulatory changes under long-term starvation
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
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rpoH | 0.55 | 3.2e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
dnaK-tpke11-dnaJ Show fit | 20.79 |
chaperone protein DnaK chaperone protein DnaJ Tpke11 |
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htpG Show fit | 13.29 |
molecular chaperone, HSP90 family |
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groSL Show fit | 13.10 |
GroES cochaperonin GroEL chaperonin |
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gapA-yeaD Show fit | 9.35 |
glyceraldehyde 3-phosphate dehydrogenase conserved protein |
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hslVU Show fit | 7.55 |
peptidase component of the HslVU protease ATPase component of the HslVU protease |
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can Show fit | 6.64 |
carbonic anhydrase 2 |
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ileS-lspA-fkpB-ispH Show fit | 6.62 |
isoleucine-tRNA ligase 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate reductase peptidyl-prolyl cis-trans isomerase prolipoprotein signal peptidase II |
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miaA-hfq-hflXKC Show fit | 6.34 |
tRNA(i6A37) synthase regulator of FtsH protease RNA-binding protein that affects many cellular processes; homolog of mammalian Sm/Sm-like proteins regulator of FtsH protease ribosome-dissociating factor, GTPase |
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mutL-miaA-hfq-hflXKC Show fit | 6.27 |
tRNA(i6A37) synthase regulator of FtsH protease RNA-binding protein that affects many cellular processes; homolog of mammalian Sm/Sm-like proteins regulator of FtsH protease MutL ribosome-dissociating factor, GTPase |
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grpE Show fit | 5.83 |
nucleotide exchange factor |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
12.4 | 37.2 | GO:0006986 | response to unfolded protein(GO:0006986) |
1.3 | 21.5 | GO:0006457 | protein folding(GO:0006457) |
4.4 | 17.6 | GO:0045974 | viral latency(GO:0019042) negative regulation of translation, ncRNA-mediated(GO:0040033) regulation of translation, ncRNA-mediated(GO:0045974) positive regulation of translation, ncRNA-mediated(GO:0045975) |
0.7 | 12.3 | GO:0006096 | glycolytic process(GO:0006096) |
2.4 | 9.7 | GO:0043335 | protein unfolding(GO:0043335) |
1.3 | 7.5 | GO:0031167 | rRNA methylation(GO:0031167) |
2.2 | 6.6 | GO:0097304 | lipoprotein biosynthetic process via signal peptide cleavage(GO:0097304) |
0.3 | 5.1 | GO:0043039 | tRNA aminoacylation for protein translation(GO:0006418) tRNA aminoacylation(GO:0043039) |
0.2 | 4.8 | GO:0051260 | protein homooligomerization(GO:0051260) |
1.5 | 4.5 | GO:0006265 | DNA topological change(GO:0006265) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 126.1 | GO:0005829 | cytosol(GO:0005829) |
0.5 | 17.0 | GO:0044445 | cytosolic part(GO:0044445) |
1.8 | 16.0 | GO:0071575 | integral component of external side of plasma membrane(GO:0071575) |
2.1 | 6.3 | GO:0032300 | mismatch repair complex(GO:0032300) |
1.4 | 4.1 | GO:0042575 | DNA polymerase complex(GO:0042575) |
0.6 | 1.7 | GO:0009274 | peptidoglycan-based cell wall(GO:0009274) |
0.8 | 1.5 | GO:0048476 | Holliday junction resolvase complex(GO:0048476) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
9.3 | 37.2 | GO:0044183 | protein binding involved in protein folding(GO:0044183) |
0.3 | 15.4 | GO:0042623 | ATPase activity, coupled(GO:0042623) |
4.2 | 12.6 | GO:0052381 | tRNA dimethylallyltransferase activity(GO:0052381) |
2.3 | 9.4 | GO:0004365 | glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity(GO:0004365) glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) activity(GO:0043891) |
1.4 | 8.6 | GO:0004222 | metalloendopeptidase activity(GO:0004222) |
2.2 | 6.6 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
2.2 | 6.6 | GO:0042380 | hydroxymethylbutenyl pyrophosphate reductase activity(GO:0042380) |
1.9 | 5.8 | GO:0060590 | ATPase regulator activity(GO:0060590) |
0.4 | 5.2 | GO:0004175 | endopeptidase activity(GO:0004175) |
0.5 | 5.1 | GO:0004812 | aminoacyl-tRNA ligase activity(GO:0004812) ligase activity, forming carbon-oxygen bonds(GO:0016875) ligase activity, forming aminoacyl-tRNA and related compounds(GO:0016876) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.6 | 4.7 | PID CMYB PATHWAY | C-MYB transcription factor network |