GSE67402: E.coli regulatory changes under long-term starvation
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
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rpoS | -0.66 | 1.7e-04 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
glgS Show fit | 48.05 |
surface composition regulator |
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ryjA Show fit | 44.75 |
RyjA |
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wrbA-yccJ Show fit | 26.13 |
NAD(P)H:quinone oxidoreductase predicted protein |
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uspB Show fit | 24.80 |
predicted universal stress (ethanol tolerance) protein B |
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osmB Show fit | 22.36 |
OsmB osmotically inducible lipoprotein |
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patA Show fit | 21.51 |
putrescine aminotransferase |
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ecnB Show fit | 17.54 |
bacteriolytic entericidin B lipoprotein |
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sdsR Show fit | 17.15 |
RyeB |
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astCADBE Show fit | 16.53 |
arginine succinyltransferase succinylarginine dihydrolase succinylornithine transaminase aldehyde dehydrogenase succinylglutamate desuccinylase |
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ytfK Show fit | 15.90 |
conserved protein |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
16.0 | 48.0 | GO:1900232 | regulation of single-species biofilm formation on inanimate substrate(GO:1900231) negative regulation of single-species biofilm formation on inanimate substrate(GO:1900232) |
1.5 | 39.2 | GO:0051289 | protein tetramerization(GO:0051262) protein homotetramerization(GO:0051289) |
16.7 | 33.4 | GO:0097305 | response to alcohol(GO:0097305) |
8.9 | 26.6 | GO:0071474 | cellular hyperosmotic response(GO:0071474) |
3.0 | 18.2 | GO:0009396 | folic acid-containing compound biosynthetic process(GO:0009396) pteridine-containing compound biosynthetic process(GO:0042559) |
4.1 | 16.6 | GO:0043711 | pilus organization(GO:0043711) |
5.5 | 16.5 | GO:0006527 | succinate metabolic process(GO:0006105) arginine catabolic process(GO:0006527) |
5.0 | 14.9 | GO:0005991 | trehalose metabolic process(GO:0005991) |
4.9 | 14.6 | GO:0046210 | nitric oxide metabolic process(GO:0046209) nitric oxide catabolic process(GO:0046210) |
2.4 | 14.6 | GO:0015931 | nucleobase-containing compound transport(GO:0015931) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
4.4 | 17.5 | GO:0031225 | anchored component of membrane(GO:0031225) |
1.0 | 11.2 | GO:0071575 | integral component of external side of plasma membrane(GO:0071575) |
3.7 | 11.0 | GO:0005950 | anthranilate synthase complex(GO:0005950) |
0.0 | 3.8 | GO:0030288 | outer membrane-bounded periplasmic space(GO:0030288) |
0.2 | 2.1 | GO:0031246 | intrinsic component of periplasmic side of cell outer membrane(GO:0031246) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
6.6 | 39.7 | GO:0004029 | aldehyde dehydrogenase (NAD) activity(GO:0004029) |
5.2 | 26.1 | GO:0016655 | oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor(GO:0016655) |
7.9 | 23.6 | GO:0015927 | trehalase activity(GO:0015927) |
3.8 | 19.0 | GO:0051213 | dioxygenase activity(GO:0051213) |
5.0 | 14.9 | GO:0035251 | UDP-glucosyltransferase activity(GO:0035251) |
0.6 | 14.9 | GO:0050660 | flavin adenine dinucleotide binding(GO:0050660) |
3.2 | 12.8 | GO:0052621 | diguanylate cyclase activity(GO:0052621) |
3.9 | 11.6 | GO:0004033 | aldo-keto reductase (NADP) activity(GO:0004033) |
1.6 | 11.3 | GO:0016744 | transferase activity, transferring aldehyde or ketonic groups(GO:0016744) |
3.4 | 10.3 | GO:0016721 | superoxide dismutase activity(GO:0004784) oxidoreductase activity, acting on superoxide radicals as acceptor(GO:0016721) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.5 | 4.4 | PID P73PATHWAY | p73 transcription factor network |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.4 | 7.2 | REACTOME INFLUENZA VIRAL RNA TRANSCRIPTION AND REPLICATION | Genes involved in Influenza Viral RNA Transcription and Replication |
1.5 | 4.4 | REACTOME PURINE SALVAGE | Genes involved in Purine salvage |