Project

GSE67402: E.coli regulatory changes under long-term starvation

Navigation
Downloads

Results for Sigma38

Z-value: 3.03

Transcription factors associated with Sigma38

Gene Symbol Gene ID Gene Info
rpoS RNA polymerase sigma factor RpoS

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
rpoS-0.661.7e-04Click!

Activity profile of Sigma38 motif

003_hr_rep1 003_hr_rep2 003_hr_rep3 004_hr_rep1 004_hr_rep2 004_hr_rep3 005_hr_rep1 005_hr_rep2 005_hr_rep3 006_hr_rep1 006_hr_rep2 006_hr_rep3 008_hr_rep1 008_hr_rep2 008_hr_rep3 024_hr_rep1 024_hr_rep2 024_hr_rep3 048_hr_rep1 048_hr_rep2 048_hr_rep3 168_hr_rep1 168_hr_rep2 168_hr_rep3 336_hr_rep1 336_hr_rep2 336_hr_rep3 −0.4−0.200.20.40.6
activity (log2(tpm) per TFBS)

Sorted Z-values of Sigma38 motif

−4−20246006_hr_rep3 005_hr_rep2 005_hr_rep3 004_hr_rep3 004_hr_rep2 006_hr_rep2 006_hr_rep1 004_hr_rep1 003_hr_rep2 003_hr_rep3 005_hr_rep1 003_hr_rep1 336_hr_rep3 008_hr_rep2 336_hr_rep2 336_hr_rep1 048_hr_rep3 048_hr_rep2 048_hr_rep1 168_hr_rep3 168_hr_rep1 024_hr_rep3 168_hr_rep2 008_hr_rep3 024_hr_rep1 008_hr_rep1 024_hr_rep2 
Z-value

Network of associatons between targets according to the STRING database.

First level regulatory network of Sigma38

PNG image of the network

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.


View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category:

Gene overrepresentation in curated gene sets: canonical pathways category:

Gene overrepresentation in curated gene sets: REACTOME pathways category: