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GSE67402: E.coli regulatory changes under long-term starvation

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Results for Sigma70

Z-value: 3.87

Transcription factors associated with Sigma70

Gene Symbol Gene ID Gene Info
rpoD RNA polymerase sigma factor RpoD

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
rpoD0.946.8e-13Click!

Activity profile of Sigma70 motif

003_hr_rep1 003_hr_rep2 003_hr_rep3 004_hr_rep1 004_hr_rep2 004_hr_rep3 005_hr_rep1 005_hr_rep2 005_hr_rep3 006_hr_rep1 006_hr_rep2 006_hr_rep3 008_hr_rep1 008_hr_rep2 008_hr_rep3 024_hr_rep1 024_hr_rep2 024_hr_rep3 048_hr_rep1 048_hr_rep2 048_hr_rep3 168_hr_rep1 168_hr_rep2 168_hr_rep3 336_hr_rep1 336_hr_rep2 336_hr_rep3 −0.4−0.3−0.2−0.100.10.20.3
activity (log2(tpm) per TFBS)

Sorted Z-values of Sigma70 motif

−4−2024048_hr_rep3 048_hr_rep2 024_hr_rep3 336_hr_rep2 048_hr_rep1 168_hr_rep1 168_hr_rep3 168_hr_rep2 336_hr_rep3 024_hr_rep1 008_hr_rep3 336_hr_rep1 024_hr_rep2 008_hr_rep1 005_hr_rep1 006_hr_rep3 008_hr_rep2 005_hr_rep3 006_hr_rep2 003_hr_rep3 004_hr_rep3 003_hr_rep2 003_hr_rep1 005_hr_rep2 006_hr_rep1 004_hr_rep2 004_hr_rep1 
Z-value

Network of associatons between targets according to the STRING database.

First level regulatory network of Sigma70

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Gene overrepresentation in cellular component category:

Gene overrepresentation in molecular function category:

Gene overrepresentation in curated gene sets: canonical pathways category:

Gene overrepresentation in curated gene sets: REACTOME pathways category: