GSE67402: E.coli regulatory changes under long-term starvation
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
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rpoD | 0.94 | 6.8e-13 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
ilvIH Show fit | 47.73 |
acetolactate synthase / acetohydroxybutanoate synthase, catalytic subunit acetolactate synthase / acetohydroxybutanoate synthase, regulatory subunit |
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tufA Show fit | 44.87 |
elongation factor Tu |
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topA Show fit | 44.16 |
DNA topoisomerase I |
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cspA Show fit | 41.49 |
CspA DNA-binding transcriptional activator |
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hupB Show fit | 38.79 |
transcriptional dual regulator HU-β, NS1 (HU-1) |
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rpsA-ihfB Show fit | 35.73 |
integration host factor (IHF), β subunit 30S ribosomal subunit protein S1 |
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ahpCF Show fit | 32.77 |
alkyl hydroperoxide reductase, AhpF component alkyl hydroperoxide reductase, AhpC component |
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pgk-fbaA Show fit | 31.54 |
phosphoglycerate kinase fructose bisphosphate aldolase class II |
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gltX Show fit | 29.61 |
glutamate-tRNA ligase |
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serA Show fit | 28.84 |
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Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
8.5 | 144.9 | GO:0006096 | glycolytic process(GO:0006096) |
21.5 | 107.4 | GO:2000765 | regulation of cytoplasmic translation(GO:2000765) |
20.3 | 81.3 | GO:0006549 | isoleucine metabolic process(GO:0006549) isoleucine biosynthetic process(GO:0009097) |
6.1 | 73.8 | GO:0006418 | tRNA aminoacylation for protein translation(GO:0006418) tRNA aminoacylation(GO:0043039) |
13.9 | 69.3 | GO:0006276 | plasmid maintenance(GO:0006276) |
22.7 | 68.2 | GO:0006265 | DNA topological change(GO:0006265) |
9.1 | 64.0 | GO:0007059 | chromosome segregation(GO:0007059) |
13.8 | 55.3 | GO:0045727 | positive regulation of cellular amide metabolic process(GO:0034250) positive regulation of translation(GO:0045727) |
8.7 | 52.3 | GO:0015920 | lipopolysaccharide transport(GO:0015920) |
15.4 | 46.3 | GO:0006306 | DNA alkylation(GO:0006305) DNA methylation(GO:0006306) DNA methylation on adenine(GO:0032775) cell cycle DNA replication initiation(GO:1902292) bacterial-type DNA replication initiation(GO:1902328) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.6 | 1106.9 | GO:0005829 | cytosol(GO:0005829) |
15.3 | 245.1 | GO:0022627 | small ribosomal subunit(GO:0015935) cytosolic small ribosomal subunit(GO:0022627) |
4.3 | 227.6 | GO:0098796 | membrane protein complex(GO:0098796) |
6.4 | 96.0 | GO:1990234 | transferase complex(GO:1990234) |
11.6 | 92.7 | GO:0005618 | cell wall(GO:0005618) |
9.1 | 82.1 | GO:0044446 | intracellular organelle part(GO:0044446) |
5.6 | 55.7 | GO:0032153 | cell division site(GO:0032153) |
4.8 | 52.3 | GO:0055052 | ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing(GO:0055052) |
10.8 | 43.2 | GO:0044427 | chromosome(GO:0005694) chromosomal part(GO:0044427) |
13.2 | 39.7 | GO:0032300 | mismatch repair complex(GO:0032300) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
18.4 | 276.3 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
6.6 | 85.5 | GO:0016876 | aminoacyl-tRNA ligase activity(GO:0004812) ligase activity, forming carbon-oxygen bonds(GO:0016875) ligase activity, forming aminoacyl-tRNA and related compounds(GO:0016876) |
17.5 | 70.0 | GO:0004618 | phosphoglycerate kinase activity(GO:0004618) |
22.7 | 68.2 | GO:0003916 | DNA topoisomerase activity(GO:0003916) |
20.7 | 62.1 | GO:0003984 | acetolactate synthase activity(GO:0003984) |
6.2 | 55.9 | GO:0050661 | NADP binding(GO:0050661) |
13.2 | 52.9 | GO:0032843 | hydroperoxide reductase activity(GO:0032843) |
16.9 | 50.6 | GO:0052381 | tRNA dimethylallyltransferase activity(GO:0052381) |
8.4 | 50.5 | GO:0070566 | adenylyltransferase activity(GO:0070566) |
11.6 | 46.5 | GO:0019238 | cyclohydrolase activity(GO:0019238) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
7.4 | 22.3 | PID CMYB PATHWAY | C-MYB transcription factor network |
8.4 | 16.9 | PID P73PATHWAY | p73 transcription factor network |
2.6 | 7.8 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
1.6 | 1.6 | PID ANGIOPOIETIN RECEPTOR PATHWAY | Angiopoietin receptor Tie2-mediated signaling |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
17.4 | 52.3 | REACTOME PEPTIDE CHAIN ELONGATION | Genes involved in Peptide chain elongation |
4.5 | 44.5 | REACTOME METABOLISM OF CARBOHYDRATES | Genes involved in Metabolism of carbohydrates |
7.8 | 23.3 | REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE | Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle |
6.2 | 18.5 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |
10.4 | 10.4 | REACTOME METABOLISM OF PROTEINS | Genes involved in Metabolism of proteins |
1.4 | 5.6 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |