GSE67402: E.coli regulatory changes under long-term starvation
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
soxS | 0.75 | 6.6e-06 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
tolC-ygiABC Show fit | 16.93 |
predicted enzyme with ATPase activity conserved outer membrane protein predicted protein TolC outer membrane channel |
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ptsG Show fit | 12.00 |
glucose PTS permease - PtsG subunit |
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sodA Show fit | 11.77 |
superoxide dismutase (Mn) |
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fldA-uof-fur Show fit | 11.74 |
Fur transcriptional dual regulator RyhB-regulated fur leader peptide flavodoxin 1 |
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acrAB Show fit | 8.04 |
AcrAB-TolC multidrug efflux pump - permease subunit AcrAB-TolC multidrug efflux pump - membrane fusion protein |
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ybjC-nfsA-rimK-ybjN Show fit | 7.13 |
NADPH nitroreductase NfsA predicted oxidoreductase predicted inner membrane protein ribosomal protein S6 modification protein |
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pgi Show fit | 6.38 |
phosphoglucose isomerase |
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uof-fur Show fit | 4.56 |
Fur transcriptional dual regulator RyhB-regulated fur leader peptide |
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zwf Show fit | 4.24 |
glucose-6-phosphate dehydrogenase (NADP+) |
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acrZ Show fit | 3.29 |
small membrane protein that interacts with the AcrAB-TolC multidrug efflux pump |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.8 | 16.9 | GO:0015891 | siderophore transport(GO:0015891) |
0.5 | 16.3 | GO:0006417 | regulation of translation(GO:0006417) |
3.0 | 12.0 | GO:0046323 | glucose transport(GO:0015758) glucose import(GO:0046323) |
3.9 | 11.8 | GO:0006801 | superoxide metabolic process(GO:0006801) |
0.9 | 8.0 | GO:0006855 | drug transmembrane transport(GO:0006855) |
2.4 | 7.1 | GO:1902209 | negative regulation of organelle organization(GO:0010639) negative regulation of cell projection organization(GO:0031345) post-translational protein modification(GO:0043687) response to alcohol(GO:0097305) regulation of single-species biofilm formation on inanimate substrate(GO:1900231) negative regulation of single-species biofilm formation on inanimate substrate(GO:1900232) negative regulation of organelle assembly(GO:1902116) negative regulation of bacterial-type flagellum assembly(GO:1902209) |
0.5 | 6.4 | GO:0034599 | cellular response to oxidative stress(GO:0034599) |
1.4 | 4.2 | GO:0009372 | quorum sensing(GO:0009372) |
1.1 | 3.3 | GO:0036460 | cellular response to cell envelope stress(GO:0036460) |
0.3 | 2.9 | GO:0034219 | carbohydrate transmembrane transport(GO:0034219) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 45.5 | GO:0005829 | cytosol(GO:0005829) |
0.5 | 25.0 | GO:1990351 | transmembrane transporter complex(GO:1902495) transporter complex(GO:1990351) |
0.0 | 4.2 | GO:0016020 | membrane(GO:0016020) |
0.1 | 3.3 | GO:0009279 | cell outer membrane(GO:0009279) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
2.8 | 16.9 | GO:0015562 | efflux transmembrane transporter activity(GO:0015562) |
0.8 | 12.0 | GO:0090563 | protein-phosphocysteine-sugar phosphotransferase activity(GO:0090563) |
3.9 | 11.8 | GO:0016721 | superoxide dismutase activity(GO:0004784) oxidoreductase activity, acting on superoxide radicals as acceptor(GO:0016721) |
2.7 | 8.0 | GO:0015307 | drug:proton antiporter activity(GO:0015307) |
2.4 | 7.1 | GO:0034567 | chromate reductase activity(GO:0034567) |
0.1 | 6.9 | GO:0008270 | zinc ion binding(GO:0008270) |
0.4 | 6.4 | GO:0016861 | intramolecular oxidoreductase activity, interconverting aldoses and ketoses(GO:0016861) |
0.1 | 4.2 | GO:0016616 | oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor(GO:0016616) |
0.3 | 3.3 | GO:0015238 | drug transmembrane transporter activity(GO:0015238) |
1.0 | 3.0 | GO:0001098 | basal transcription machinery binding(GO:0001098) bacterial-type RNA polymerase holo enzyme binding(GO:0001108) |