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GSE67402: E.coli regulatory changes under long-term starvation

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Results for StpA

Z-value: 1.15

Transcription factors associated with StpA

Gene Symbol Gene ID Gene Info
stpA
stpA DNA-binding transcriptional repressor StpA with RNA chaperone activity

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
stpA-0.281.6e-01Click!

Activity profile of StpA motif

Sorted Z-values of StpA motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
ssrS 31.09
ssrS
6S RNA
ssrS-fau 31.07
ssrS
fau
6S RNA
5-formyltetrahydrofolate cyclo-ligase

Network of associatons between targets according to the STRING database.

First level regulatory network of StpA

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
10.4 31.1 GO:0035999 tetrahydrofolate interconversion(GO:0035999)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
7.8 31.1 GO:0016882 cyclo-ligase activity(GO:0016882)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
10.4 31.1 REACTOME METABOLISM OF MRNA Genes involved in Metabolism of mRNA