GSE67402: E.coli regulatory changes under long-term starvation

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
trpR Links RegulonDB EcoCyc	trpR	TrpR transcriptional repressor

Gene	Promoter	Pearson corr. coef.	P-value	Plot
trpR		0.59	1.2e-03	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
trpLEDCBA Show fit	22.18		trpL Links RegulonDB EcoCyc Show fit trpB Links RegulonDB EcoCyc Show fit trpC Links RegulonDB EcoCyc Show fit trpA Links RegulonDB EcoCyc Show fit trpD Links RegulonDB EcoCyc Show fit trpE Links RegulonDB EcoCyc Show fit	trp operon leader peptide tryptophan synthase, β subunit indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase tryptophan synthase, α subunit anthranilate synthase component II anthranilate synthase component I
trpL Show fit	20.74		trpL Links RegulonDB EcoCyc Show fit	trp operon leader peptide
mtr Show fit	15.21		mtr Links RegulonDB EcoCyc Show fit	tryptohan / indole:H+ symporter Mtr
trpR Show fit	4.22		trpR Links RegulonDB EcoCyc Show fit	TrpR transcriptional repressor

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
10.7	42.9	GO:0033238	regulation of cellular amino acid metabolic process(GO:0006521) regulation of cellular amine metabolic process(GO:0033238) regulation of tryptophan metabolic process(GO:0090357)
5.1	15.2	GO:0015827	tryptophan transport(GO:0015827)
0.0	4.2	GO:2001141	regulation of transcription, DNA-templated(GO:0006355) regulation of nucleic acid-templated transcription(GO:1903506) regulation of RNA biosynthetic process(GO:2001141)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
7.4	22.2	GO:0005950	anthranilate synthase complex(GO:0005950)
0.1	15.2	GO:0005887	integral component of plasma membrane(GO:0005887)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
5.1	15.2	GO:0015196	L-tryptophan transmembrane transporter activity(GO:0015196)
2.5	22.2	GO:0016833	oxo-acid-lyase activity(GO:0016833)
0.1	4.2	GO:0043565	sequence-specific DNA binding(GO:0043565)