Project

GSE67402: E.coli regulatory changes under long-term starvation

Navigation
Downloads

Results for UxuR

Z-value: 1.16

Transcription factors associated with UxuR

Gene Symbol Gene ID Gene Info
uxuR
uxuR UxuR DNA-binding transcriptional repressor

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
uxuR-0.311.2e-01Click!

Activity profile of UxuR motif

Sorted Z-values of UxuR motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
gntP 23.41
gntP
gluconate / fructuronate transporter GntP
uidABC 10.23
uidB
uidC
uidA
glucuronide:H+ symporter
outer membrane-associated protein
β-D-glucuronidase
lgoR 7.17
lgoR
predicted DNA-binding transcriptional regulator
uxuAB 6.74
uxuA
uxuB
D-mannonate dehydratase
D-mannonate oxidoreductase
exuR 3.02
exuR
ExuR DNA-binding transcriptional repressor
uxuR 2.24
uxuR
UxuR DNA-binding transcriptional repressor

Network of associatons between targets according to the STRING database.

First level regulatory network of UxuR

PNG image of the network

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.
View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
7.8 23.4 GO:0042873 aldonate transport(GO:0042873)
2.2 6.7 GO:0006063 uronic acid metabolic process(GO:0006063)
1.2 7.2 GO:0046176 aldonic acid metabolic process(GO:0019520) aldonic acid catabolic process(GO:0046176)
0.9 10.2 GO:1901658 glycosyl compound catabolic process(GO:1901658)
0.0 3.0 GO:0045892 negative regulation of transcription, DNA-templated(GO:0045892) negative regulation of RNA biosynthetic process(GO:1902679) negative regulation of nucleic acid-templated transcription(GO:1903507)
0.0 2.2 GO:0006351 transcription, DNA-templated(GO:0006351) nucleic acid-templated transcription(GO:0097659)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
2.6 10.2 GO:0043231 membrane-bounded organelle(GO:0043227) intracellular membrane-bounded organelle(GO:0043231)
0.1 23.4 GO:0005887 integral component of plasma membrane(GO:0005887)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
4.7 23.4 GO:0015128 gluconate transmembrane transporter activity(GO:0015128) aldonate transmembrane transporter activity(GO:0042879)
0.5 10.2 GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds(GO:0004553)
0.3 6.7 GO:0008198 ferrous iron binding(GO:0008198)