Project

GSE67402: E.coli regulatory changes under long-term starvation

Navigation
Downloads

Results for YdeO

Z-value: 1.40

Transcription factors associated with YdeO

Gene Symbol Gene ID Gene Info
ydeO
ydeO YdeO DNA-binding transcriptional dual regulator

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
ydeO,
0.271.7e-01Click!

Activity profile of YdeO motif

Sorted Z-values of YdeO motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
gadE 27.64
gadE
GadE DNA-binding transcriptional activator
safA-ydeO 15.80
ydeO
safA
YdeO DNA-binding transcriptional dual regulator
two-component system connector protein
yiiS-uspD 15.10
yiiS
uspD
conserved protein
stress protein involved in resistance to UV irradiation
gadW 8.07
gadW
GadW DNA-binding transcriptional dual regulator
slp-dctR 7.02
slp
dctR
starvation lipoprotein
predicted DNA-binding transcriptional regulator
appCBXA 4.68
appC
appB
appA
appX
cytochrome bd-II terminal oxidase subunit I
cytochrome bd-II terminal oxidase subunit II
periplasmic protein with phosphoanhydride phosphatase and multiple inositol-polyphosphate phosphatase activity
small outer membrane protein
hyaABCDEF 4.54
hyaB
hyaC
hyaA
hyaF
hyaD
hyaE
hydrogenase 1, large subunit
hydrogenase 1, b-type cytochrome subunit
hydrogenase 1, small subunit
protein involved in nickel incorporation into hydrogenase 1 proteins
protein involved in processing of HyaA and HyaB proteins
protein involved in quality control of HyaA
gadE-mdtEF 3.23
mdtF
mdtE
gadE
MdtEF-TolC multidrug efflux pump - permease subunit
MdtEF-TolC multidrug efflux pump - membrane fusion protein
GadE DNA-binding transcriptional activator

Network of associatons between targets according to the STRING database.

First level regulatory network of YdeO

PNG image of the network

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.
View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
2.3 7.0 GO:0031329 regulation of cellular catabolic process(GO:0031329) regulation of cellular carbohydrate catabolic process(GO:0043471)
1.2 4.7 GO:0019646 aerobic electron transport chain(GO:0019646)
0.9 4.5 GO:0016485 protein processing(GO:0016485)
0.4 3.2 GO:0006855 drug transmembrane transport(GO:0006855)
0.3 51.5 GO:2001141 regulation of transcription, DNA-templated(GO:0006355) regulation of nucleic acid-templated transcription(GO:1903506) regulation of RNA biosynthetic process(GO:2001141)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
1.6 4.7 GO:0070069 cytochrome complex(GO:0070069)
0.9 4.5 GO:0031237 intrinsic component of periplasmic side of plasma membrane(GO:0031237)
0.1 7.0 GO:0019867 outer membrane(GO:0019867)
0.1 19.0 GO:0031226 intrinsic component of plasma membrane(GO:0031226)
0.0 15.1 GO:0005829 cytosol(GO:0005829)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
1.6 4.7 GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors(GO:0016679) oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor(GO:0016682) sugar-phosphatase activity(GO:0050308)
1.5 4.5 GO:0005048 signal sequence binding(GO:0005048)
0.3 23.9 GO:0003700 transcription factor activity, sequence-specific DNA binding(GO:0003700)
0.3 30.9 GO:0003677 DNA binding(GO:0003677)
0.0 7.0 GO:0042802 identical protein binding(GO:0042802)