GSE67402: E.coli regulatory changes under long-term starvation

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
yiaJ Links RegulonDB EcoCyc	yiaJ	YiaJ DNA-binding transcriptional repressor

Gene	Promoter	Pearson corr. coef.	P-value	Plot
yiaJ		-0.77	2.3e-06	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
yiaKLMNO-lyxK-sgbHUE Show fit	6.81		lyxK Links RegulonDB EcoCyc Show fit sgbH Links RegulonDB EcoCyc Show fit sgbE Links RegulonDB EcoCyc Show fit sgbU Links RegulonDB EcoCyc Show fit yiaK Links RegulonDB EcoCyc Show fit yiaM Links RegulonDB EcoCyc Show fit yiaL Links RegulonDB EcoCyc Show fit yiaO Links RegulonDB EcoCyc Show fit yiaN Links RegulonDB EcoCyc Show fit	L-xylulose kinase 3-keto-L-gulonate 6-phosphate decarboxylase L-ribulose-5-phosphate 4-epimerase predicted L-xylulose 5-phosphate 3-epimerase 2,3-diketo-L-gulonate reductase 2,3-diketo-L-gulonate:Na+ symporter - membrane subunit conserved protein 2,3-diketo-L-gulonate:Na+ symporter - periplasmic binding protein 2,3-diketo-L-gulonate:Na+ symporter - membrane subunit
yiaJ Show fit	0.81		yiaJ Links RegulonDB EcoCyc Show fit	YiaJ DNA-binding transcriptional repressor

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
2.3	6.8	GO:0019324	L-lyxose metabolic process(GO:0019324)
0.0	0.8	GO:0045892	negative regulation of transcription, DNA-templated(GO:0045892) negative regulation of RNA biosynthetic process(GO:1902679) negative regulation of nucleic acid-templated transcription(GO:1903507)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	6.8	GO:0030288	outer membrane-bounded periplasmic space(GO:0030288)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
2.3	6.8	GO:0008742	L-ribulose-phosphate 4-epimerase activity(GO:0008742)
0.0	0.8	GO:0003700	transcription factor activity, sequence-specific DNA binding(GO:0003700)