Project
GSE80451: E.coli grown aerobically and anaerobically
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Results for AppY
Z-value: 0.17
Transcription factors associated with AppY
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
appY
|
appY | AppY DNA-binding transcriptional activator |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| appY | -0.77 | 1.2e-01 | Click! |
Activity profile of AppY motif
Sorted Z-values of AppY motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| hyaABCDEF | 0.14 |
hyaB
hyaC
hyaA
hyaF
hyaD
hyaE
|
hydrogenase 1, large subunit hydrogenase 1, b-type cytochrome subunit hydrogenase 1, small subunit protein involved in nickel incorporation into hydrogenase 1 proteins protein involved in processing of HyaA and HyaB proteins protein involved in quality control of HyaA |
|
| appCBXA | 0.10 |
appC
appB
appA
appX
|
cytochrome bd-II terminal oxidase subunit I cytochrome bd-II terminal oxidase subunit II periplasmic protein with phosphoanhydride phosphatase and multiple inositol-polyphosphate phosphatase activity small outer membrane protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AppY
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | GO:0016485 | protein processing(GO:0016485) |
| 0.0 | 0.1 | GO:0019646 | aerobic electron transport chain(GO:0019646) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | GO:0070069 | cytochrome complex(GO:0070069) |
| 0.0 | 0.1 | GO:0031237 | intrinsic component of periplasmic side of plasma membrane(GO:0031237) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | GO:0005048 | signal sequence binding(GO:0005048) |
| 0.0 | 0.1 | GO:0016679 | oxidoreductase activity, acting on diphenols and related substances as donors(GO:0016679) oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor(GO:0016682) sugar-phosphatase activity(GO:0050308) |