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GSE80451: E.coli grown aerobically and anaerobically

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Results for AraC

Z-value: 0.29

Transcription factors associated with AraC

Gene Symbol Gene ID Gene Info
araC
araC AraC DNA-binding transcriptional dual regulator

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
araC-0.405.0e-01Click!

Activity profile of AraC motif

Sorted Z-values of AraC motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
ydeNM 0.29
ydeM
ydeN
predicted anaerobic sulfatase maturation enzyme
putative sulfatase
araE-ygeA 0.17
ygeA
araE
predicted racemase
arabinose:H+ symporter
araBAD 0.14
araB
araA
araD
L-ribulokinase
L-arabinose isomerase
L-ribulose 5-phosphate 4-epimerase
araC 0.04
araC
AraC DNA-binding transcriptional dual regulator
araFGH 0.03
araF
araG
araH
arabinose ABC transporter - periplasmic binding protein
arabinose ABC transporter - ATP binding subunit
arabinose ABC transporter - membrane subunit
araE 0.01
araE
arabinose:H+ symporter

Network of associatons between targets according to the STRING database.

First level regulatory network of AraC

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0042882 L-arabinose transport(GO:0042882)
0.0 0.1 GO:0019324 L-lyxose metabolic process(GO:0019324)
0.0 0.3 GO:0051604 protein maturation(GO:0051604)
0.0 0.0 GO:0019566 arabinose metabolic process(GO:0019566) arabinose catabolic process(GO:0019568)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.2 GO:0015147 L-arabinose transmembrane transporter activity(GO:0015147)
0.0 0.1 GO:0008742 L-ribulose-phosphate 4-epimerase activity(GO:0008742)