GSE80451: E.coli grown aerobically and anaerobically
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
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fis | -0.98 | 3.5e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
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rrsA-ileT-alaT-rrlA-rrfA Show fit | 6.03 |
23S ribosomal RNA (rrlA) tRNAileT tRNAalaT 16S ribosomal RNA (rrsA) 5S ribosomal RNA (rrfA) |
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rrsE-gltV-rrlE-rrfE Show fit | 5.84 |
rrlE 23S ribosomal RNA tRNAgltV rrsE 16S ribosomal RNA rrfE 5S ribosomal RNA |
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rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF Show fit | 5.75 |
rrlD 23S ribosomal RNA tRNAileU tRNAalaU tRNAthrV rrfF 5S ribosomal RNA rrsD 16S ribosomal RNA rrfD 5S ribosomal RNA |
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rrsB-gltT-rrlB-rrfB Show fit | 5.74 |
rrlB 23S ribosomal RNA tRNAgltT rrfB 5S ribosomal RNA rrsB 16S ribosomal RNA |
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rrsC-gltU-rrlC-rrfC Show fit | 5.72 |
rrlC 23S ribosomal RNA tRNAgltU rrfC 5S ribosomal RNA rrsC 16S ribosomal RNA |
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rrsG-gltW-rrlG-rrfG Show fit | 5.68 |
rrlG 23S ribosomal RNA tRNAgltW rrfG 5S ribosomal RNA rrsG 16S ribosomal RNA |
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rrsH-ileV-alaV-rrlH-rrfH Show fit | 5.44 |
rrlH 23S ribosomal RNA rrfH 5S ribosomal RNA rrsH 16S ribosomal RNA tRNAileV tRNAalaV |
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glpABC Show fit | 3.62 |
anaerobic glycerol-3-phosphate dehydrogenase subunit A anaerobic glycerol-3-phosphate dehydrogenase subunit C anaerobic glycerol-3-phosphate dehydrogenase subunit B |
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leuX Show fit | 3.27 |
tRNAleuX |
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cspA Show fit | 2.91 |
CspA DNA-binding transcriptional activator |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.2 | 3.6 | GO:0019676 | ammonia assimilation cycle(GO:0019676) |
1.0 | 2.9 | GO:0043242 | negative regulation of protein complex disassembly(GO:0043242) negative regulation of DNA-templated transcription, termination(GO:0060567) |
0.9 | 2.7 | GO:0019626 | glyoxylate cycle(GO:0006097) short-chain fatty acid catabolic process(GO:0019626) |
0.9 | 2.6 | GO:0006265 | DNA topological change(GO:0006265) |
0.8 | 2.5 | GO:0015765 | methylgalactoside transport(GO:0015765) |
0.6 | 2.2 | GO:0015748 | organophosphate ester transport(GO:0015748) |
0.5 | 2.2 | GO:0007584 | response to nutrient(GO:0007584) |
0.7 | 2.0 | GO:0034661 | ncRNA catabolic process(GO:0034661) |
0.3 | 2.0 | GO:0042455 | ribonucleoside biosynthetic process(GO:0042455) |
0.2 | 1.7 | GO:0046434 | organophosphate catabolic process(GO:0046434) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.9 | 2.6 | GO:0009295 | nucleoid(GO:0009295) |
0.7 | 2.0 | GO:0070069 | cytochrome complex(GO:0070069) |
0.0 | 1.9 | GO:1904949 | ATP-binding cassette (ABC) transporter complex(GO:0043190) ATPase dependent transmembrane transport complex(GO:0098533) ATPase complex(GO:1904949) |
0.0 | 1.3 | GO:1902494 | catalytic complex(GO:1902494) |
0.1 | 0.4 | GO:0031237 | intrinsic component of periplasmic side of plasma membrane(GO:0031237) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.2 | 3.6 | GO:0016901 | oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor(GO:0016901) |
0.9 | 3.6 | GO:0016211 | ammonia ligase activity(GO:0016211) |
0.7 | 2.9 | GO:0001070 | RNA binding transcription factor activity(GO:0001070) transcription antitermination factor activity, RNA binding(GO:0001072) |
0.9 | 2.6 | GO:0003916 | DNA topoisomerase activity(GO:0003916) |
0.8 | 2.5 | GO:0015592 | methylgalactoside transmembrane transporter activity(GO:0015592) |
0.1 | 2.5 | GO:0003729 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
0.7 | 2.2 | GO:0015166 | polyol transmembrane transporter activity(GO:0015166) |
0.5 | 2.0 | GO:0047429 | nucleoside-triphosphate diphosphatase activity(GO:0047429) |
0.6 | 1.8 | GO:0016884 | carbon-nitrogen ligase activity, with glutamine as amido-N-donor(GO:0016884) |
0.5 | 1.6 | GO:0048039 | ubiquinone binding(GO:0048039) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 2.2 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |