GSE80451: E.coli grown aerobically and anaerobically

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
gntR Links RegulonDB EcoCyc	gntR	GntR DNA-binding transcriptional repressor

Gene	Promoter	Pearson corr. coef.	P-value	Plot
gntR		0.79	1.1e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
gntT Show fit	1.40		gntT Links RegulonDB EcoCyc Show fit	gluconate transporter GntT
edd-eda Show fit	0.78		eda Links RegulonDB EcoCyc Show fit edd Links RegulonDB EcoCyc Show fit	multifunctional 2-keto-3-deoxygluconate 6-phosphate aldolase and 2-keto-4-hydroxyglutarate aldolase and oxaloacetate decarboxylase phosphogluconate dehydratase
idnDOTR Show fit	0.77		idnD Links RegulonDB EcoCyc Show fit idnO Links RegulonDB EcoCyc Show fit idnR Links RegulonDB EcoCyc Show fit idnT Links RegulonDB EcoCyc Show fit	L-idonate 5-dehydrogenase 5-keto-D-gluconate 5-reductase IdnR transcriptional regulator L-idonate / 5-ketogluconate / gluconate transporter IdnT
gntX-nfuA Show fit	0.69		gntX Links RegulonDB EcoCyc Show fit nfuA Links RegulonDB EcoCyc Show fit	protein involved in utilization of DNA as a carbon source iron-sulfur cluster scaffold protein

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.2	0.7	GO:0015976	carbon utilization(GO:0015976)
0.1	0.3	GO:0042873	aldonate transport(GO:0042873)
0.0	0.2	GO:0046177	D-gluconate metabolic process(GO:0019521) D-gluconate catabolic process(GO:0046177)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.3	1.7	GO:0042879	gluconate transmembrane transporter activity(GO:0015128) aldonate transmembrane transporter activity(GO:0042879)
0.1	0.8	GO:0016833	oxo-acid-lyase activity(GO:0016833)
0.0	0.7	GO:0051539	4 iron, 4 sulfur cluster binding(GO:0051539)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.3	0.8	NABA MATRISOME ASSOCIATED	Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors