GSE80451: E.coli grown aerobically and anaerobically
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
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lrp | -0.93 | 2.4e-02 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
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rrsA-ileT-alaT-rrlA-rrfA Show fit | 18.64 |
23S ribosomal RNA (rrlA) tRNAileT tRNAalaT 16S ribosomal RNA (rrsA) 5S ribosomal RNA (rrfA) |
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rrsE-gltV-rrlE-rrfE Show fit | 18.12 |
rrlE 23S ribosomal RNA tRNAgltV rrsE 16S ribosomal RNA rrfE 5S ribosomal RNA |
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rrsD-ileU-alaU-rrlD-rrfD-thrV-rrfF Show fit | 17.82 |
rrlD 23S ribosomal RNA tRNAileU tRNAalaU tRNAthrV rrfF 5S ribosomal RNA rrsD 16S ribosomal RNA rrfD 5S ribosomal RNA |
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rrsB-gltT-rrlB-rrfB Show fit | 17.79 |
rrlB 23S ribosomal RNA tRNAgltT rrfB 5S ribosomal RNA rrsB 16S ribosomal RNA |
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rrsC-gltU-rrlC-rrfC Show fit | 17.75 |
rrlC 23S ribosomal RNA tRNAgltU rrfC 5S ribosomal RNA rrsC 16S ribosomal RNA |
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rrsG-gltW-rrlG-rrfG Show fit | 17.64 |
rrlG 23S ribosomal RNA tRNAgltW rrfG 5S ribosomal RNA rrsG 16S ribosomal RNA |
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rrsH-ileV-alaV-rrlH-rrfH Show fit | 16.92 |
rrlH 23S ribosomal RNA rrfH 5S ribosomal RNA rrsH 16S ribosomal RNA tRNAileV tRNAalaV |
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ilvLXG_1G_2MEDA Show fit | 11.97 |
branched-chain amino-acid aminotransferase small protein acetolactate synthase / acetohydroxybutanoate synthase, regulatory subunit ilvGEDA operon leader peptide acetolactate synthase II, large subunit, N-ter fragment (pseudogene) dihydroxy acid dehydratase acetolactate synthase II, large subunit, C-ter fragment (pseudogene) threonine deaminase |
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avtA Show fit | 8.91 |
valine-pyruvate aminotransferase |
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serA Show fit | 8.28 |
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Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
4.5 | 31.3 | GO:0009099 | valine biosynthetic process(GO:0009099) |
1.9 | 5.7 | GO:0015074 | DNA integration(GO:0015074) |
0.9 | 4.3 | GO:0042450 | ornithine metabolic process(GO:0006591) arginine biosynthetic process via ornithine(GO:0042450) |
1.3 | 4.0 | GO:0046417 | chorismate metabolic process(GO:0046417) |
1.3 | 3.8 | GO:0019676 | ammonia assimilation cycle(GO:0019676) |
0.6 | 3.0 | GO:0071468 | cellular response to acidic pH(GO:0071468) |
1.0 | 2.9 | GO:0019464 | glycine decarboxylation via glycine cleavage system(GO:0019464) |
0.9 | 2.7 | GO:0015820 | branched-chain amino acid transport(GO:0015803) leucine transport(GO:0015820) |
0.1 | 0.2 | GO:0042884 | microcin transport(GO:0042884) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.3 | 4.9 | GO:1990234 | transferase complex(GO:1990234) |
0.2 | 2.9 | GO:1990204 | oxidoreductase complex(GO:1990204) |
0.1 | 1.3 | GO:0055052 | ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing(GO:0055052) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
5.6 | 16.9 | GO:0003984 | acetolactate synthase activity(GO:0003984) |
0.6 | 8.5 | GO:0008483 | transaminase activity(GO:0008483) |
1.4 | 4.3 | GO:0004777 | succinate-semialdehyde dehydrogenase (NAD+) activity(GO:0004777) |
0.2 | 4.0 | GO:0016765 | transferase activity, transferring alkyl or aryl (other than methyl) groups(GO:0016765) |
0.5 | 2.9 | GO:0031405 | lipoic acid binding(GO:0031405) |
0.9 | 2.7 | GO:0070492 | oligosaccharide binding(GO:0070492) |
0.6 | 1.8 | GO:0051087 | chaperone binding(GO:0051087) |
0.4 | 1.3 | GO:0015192 | L-phenylalanine transmembrane transporter activity(GO:0015192) |
0.3 | 1.1 | GO:0015491 | L-lysine transmembrane transporter activity(GO:0015189) cation:cation antiporter activity(GO:0015491) |