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GSE80451: E.coli grown aerobically and anaerobically
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Motif significance table
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Results for MlrA
Z-value: 0.32
Transcription factors associated with MlrA
Gene Symbol
Gene ID
Gene Info
mlrA
Links
RegulonDB
EcoCyc
mlrA
MlrA DNA binding transcriptional activator
Activity-expression correlation:
Gene
Promoter
Pearson corr. coef.
P-value
Plot
mlrA
-0.73
1.6e-01
Click!
Activity profile of MlrA motif
Aerobic_1_1
Aerobic_2_1
Aerobic_3_1
Anaerobic_1_1
Anaerobic_3_1
−0.2
−0.15
−0.1
−0.05
0
0.05
0.1
0.15
0.2
0.25
activity (log2(tpm) per TFBS)
plotly-logomark
Sorted Z-values of MlrA motif
−0.6
−0.4
−0.2
0
0.2
Aerobic_2_1
Aerobic_3_1
Aerobic_1_1
Anaerobic_3_1
Anaerobic_1_1
Z-value
plotly-logomark
Top targets:
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Promoter
Log-likelihood
Transcript
Gene
Gene Info
ibaG
Show fit
0.72
ibaG
Links
RegulonDB
EcoCyc
Show fit
predicted DNA-binding transcriptional regulator
csgDEFG
Show fit
0.47
csgG
Links
RegulonDB
EcoCyc
Show fit
csgF
Links
RegulonDB
EcoCyc
Show fit
csgE
Links
RegulonDB
EcoCyc
Show fit
csgD
Links
RegulonDB
EcoCyc
Show fit
curli secretion channel
curli assembly component
curli transport specificity factor
CsgD DNA-binding transcriptional dual regulator
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Network of associatons between targets according to the
STRING database.
First level regulatory network of MlrA
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Gene Ontology Analysis
Gene overrepresentation in biological process category:
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Log-likelihood per target
Total log-likelihood
Term
Description
0.0
0.7
GO:0001101
response to acid chemical(GO:0001101)
0.1
0.5
GO:0043900
regulation of multi-organism process(GO:0043900) regulation of single-species biofilm formation(GO:1900190)
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Gene overrepresentation in cellular component category:
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entries
Log-likelihood per target
Total log-likelihood
Term
Description
0.1
0.5
GO:0031246
intrinsic component of periplasmic side of cell outer membrane(GO:0031246)
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Gene overrepresentation in molecular function category:
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Log-likelihood per target
Total log-likelihood
Term
Description
0.0
0.5
GO:0000987
bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding(GO:0000986) core promoter proximal region sequence-specific DNA binding(GO:0000987) core promoter proximal region DNA binding(GO:0001159)
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