GSE80451: E.coli grown aerobically and anaerobically
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
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moaABCDE Show fit | 3.98 |
molybdopterin synthase large subunit molybdopterin synthase small subunit cyclic pyranopterin monophosphate synthase MoaB protein GTP 3',8'-cyclase |
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deoCABD Show fit | 3.50 |
thymidine phosphorylase / uracil phosphorylase phosphopentomutase deoxyribose-phosphate aldolase purine nucleoside phosphorylase |
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napFDAGHBC-ccmABCDEFGH Show fit | 2.02 |
ferredoxin-type protein ferredoxin-type protein signal peptide-binding chaperone for NapA periplasmic nitrate reductase, cytochrome c protein holocytochrome c synthetase - thiol:disulfide oxidoreductase CcmH large subunit of periplasmic nitrate reductase, molybdoprotein membrane anchored periplasmic heme chaperone CcmE ABC complex for formation and release of holoCcmE - membrane subunit CcmD holocytochrome c synthetase - thiol:disulfide oxidoreductase CcmG holocytochrome c synthetase - CcmF subunit ABC complex for formation and release of holoCcmE - ATP binding subunit ABC complex for formation and release of holoCcmE - membrane subunit CcmC ABC complex for formation and release of holoCcmE - membrane subunit CcmB ferredoxin-type protein subunit of periplasmic nitrate reductase, cytochrome c550 protein |
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hycABCDEFGHI Show fit | 1.38 |
hydrogenase 3, membrane subunit hydrogenase 3, large subunit formate hydrogenlyase complex iron-sulfur protein hydrogenase 3 and formate hydrogenlyase complex, HycG subunit regulator of the transcriptional regulator FhlA hydrogenase 3, Fe-S subunit hydrogenase 3, membrane subunit protein required for maturation of hydrogenase 3 hydrogenase 3 maturation protease |
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oppABCDF Show fit | 1.34 |
peptide ABC transporter - periplasmic binding protein murein tripeptide ABC transporter / peptide ABC transporter - putative membrane subunit murein tripeptide ABC transporter / peptide ABC transporter - putative membrane subunit murein tripeptide ABC transporter / peptide ABC transporter - putative ATP binding subunit murein tripeptide ABC transporter / peptide ABC transporter - putative ATP binding subunit |
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narXL Show fit | 1.01 |
NarL NarX |
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dmsABC Show fit | 0.65 |
dimethyl sulfoxide reductase, chain A dimethyl sulfoxide reductase, chain B dimethyl sulfoxide reductase, chain C |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.3 | 4.0 | GO:0046039 | GTP metabolic process(GO:0046039) prosthetic group metabolic process(GO:0051189) |
1.2 | 3.5 | GO:0009264 | deoxyribonucleotide catabolic process(GO:0009264) |
0.7 | 2.0 | GO:0018063 | heme transport(GO:0015886) protein-heme linkage(GO:0017003) protein-tetrapyrrole linkage(GO:0017006) cytochrome c-heme linkage(GO:0018063) regulation of protein localization(GO:0032880) regulation of protein transport(GO:0051223) regulation of establishment of protein localization(GO:0070201) |
0.3 | 1.4 | GO:0016485 | protein processing(GO:0016485) |
0.4 | 1.3 | GO:0006857 | oligopeptide transport(GO:0006857) oligopeptide transmembrane transport(GO:0035672) |
0.3 | 1.0 | GO:1902170 | nitrogen cycle metabolic process(GO:0071941) cellular response to nitrogen compound(GO:1901699) cellular response to reactive nitrogen species(GO:1902170) |
0.0 | 0.7 | GO:0009061 | anaerobic respiration(GO:0009061) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 8.5 | GO:0005829 | cytosol(GO:0005829) |
0.7 | 2.0 | GO:0031235 | intrinsic component of the cytoplasmic side of the plasma membrane(GO:0031235) |
0.1 | 1.4 | GO:1990204 | oxidoreductase complex(GO:1990204) |
0.2 | 0.7 | GO:0031237 | intrinsic component of periplasmic side of plasma membrane(GO:0031237) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.7 | 4.0 | GO:0016783 | sulfurtransferase activity(GO:0016783) |
0.7 | 3.5 | GO:0004645 | phosphorylase activity(GO:0004645) intramolecular transferase activity, phosphotransferases(GO:0016868) |
0.7 | 2.0 | GO:0005048 | signal sequence binding(GO:0005048) |
0.1 | 1.4 | GO:0016151 | nickel cation binding(GO:0016151) |
0.4 | 1.3 | GO:0015647 | oligopeptide transporter activity(GO:0015198) peptidoglycan transporter activity(GO:0015647) oligopeptide transmembrane transporter activity(GO:0035673) |
0.1 | 1.0 | GO:0004721 | phosphoprotein phosphatase activity(GO:0004721) |
0.0 | 0.7 | GO:0009055 | electron carrier activity(GO:0009055) |