Project
GSE80451: E.coli grown aerobically and anaerobically
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Results for OmpR
Z-value: 0.30
Transcription factors associated with OmpR
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
ompR
|
ompR | OmpR transcriptional dual regulator |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| ompR | 0.52 | 3.7e-01 | Click! |
Activity profile of OmpR motif
Sorted Z-values of OmpR motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| bolA | 1.32 |
bolA
|
BolA DNA-binding transcriptional dual regulator |
|
| ompC | 0.67 |
ompC
|
outer membrane protein C |
|
| pgaABCD | 0.43 |
pgaA
pgaB
pgaC
pgaD
|
partially N-deacetylated poly-β-1,6-N-acetyl-D-glucosamine outer membrane porin poly-β-1,6-N-acetyl-D-glucosamine N-deacetylase poly-β-1,6-N-acetyl-D-glucosamine synthase - PgaC subunit poly-β-1,6-N-acetyl-D-glucosamine synthase - PgaD subunit |
|
| fadL | 0.35 |
fadL
|
long-chain fatty acid outer membrane porin; bacteriophage T2 receptor |
|
| ecnB | 0.17 |
ecnB
|
bacteriolytic entericidin B lipoprotein |
|
| sra | 0.07 |
sra
|
30S ribosomal subunit protein S22 |
Network of associatons between targets according to the STRING database.
First level regulatory network of OmpR
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.7 | GO:0015748 | organophosphate ester transport(GO:0015748) |
| 0.1 | 0.4 | GO:0043708 | cell adhesion involved in biofilm formation(GO:0043708) |
| 0.0 | 0.3 | GO:0006869 | lipid transport(GO:0006869) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.7 | GO:0045203 | integral component of cell outer membrane(GO:0045203) |
| 0.1 | 0.2 | GO:0031225 | anchored component of membrane(GO:0031225) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.4 | GO:0008375 | acetylglucosaminyltransferase activity(GO:0008375) |
| 0.1 | 0.3 | GO:0099600 | gated channel activity(GO:0022836) transmembrane receptor activity(GO:0099600) |