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GSE80451: E.coli grown aerobically and anaerobically

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Results for RcsB

Z-value: 1.49

Transcription factors associated with RcsB

Gene Symbol Gene ID Gene Info
rcsB
rcsB DNA-binding transcriptional activator RcsB

Activity profile of RcsB motif

Sorted Z-values of RcsB motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
osmB 9.41
osmB
OsmB osmotically inducible lipoprotein
gadBC 4.06
gadB
gadC
glutamate decarboxylase B subunit
glutamic acid:4-aminobutyrate antiporter
osmC 3.50
osmC
osmotically inducible peroxiredoxin
hdeD 2.49
hdeD
acid-resistance membrane protein
lolA-rarA 1.58
rarA
lolA
recombination factor
periplasmic chaperone, effects translocation of lipoproteins from inner membrane to outer
ydeP 1.19
ydeP
acid resistance protein
bdm-sra 0.45
bdm
sra
biofilm-dependent modulation protein
30S ribosomal subunit protein S22
hdeAB-yhiD 0.04
yhiD
hdeB
hdeA
inner membrane protein YhiD
HdeB monomer
HdeA monomer, chaperone active form

Network of associatons between targets according to the STRING database.

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.0 4.0 GO:0045852 pH elevation(GO:0045852) intracellular pH elevation(GO:0051454)
0.5 1.6 GO:0072321 chaperone-mediated protein transport(GO:0072321)
0.4 3.5 GO:0006972 hyperosmotic response(GO:0006972)
0.2 3.7 GO:0009268 response to pH(GO:0009268)
0.1 0.5 GO:1902115 regulation of organelle organization(GO:0033043) regulation of organelle assembly(GO:1902115) regulation of bacterial-type flagellum assembly(GO:1902208)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 1.6 GO:0005657 replication fork(GO:0005657) replisome(GO:0030894)
0.0 0.5 GO:0015935 small ribosomal subunit(GO:0015935) cytosolic small ribosomal subunit(GO:0022627)
0.0 3.0 GO:0005887 integral component of plasma membrane(GO:0005887)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
1.2 3.5 GO:0051920 peroxiredoxin activity(GO:0051920)
0.3 4.1 GO:0015297 antiporter activity(GO:0015297)
0.2 1.6 GO:0008565 protein transporter activity(GO:0008565)
0.0 0.0 GO:0051087 chaperone binding(GO:0051087)