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GSE80451: E.coli grown aerobically and anaerobically
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Motif significance table
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Results for RstA
Z-value: 1.19
Transcription factors associated with RstA
Gene Symbol
Gene ID
Gene Info
rstA
Links
RegulonDB
EcoCyc
rstA
RstA transcriptional regulator
Activity-expression correlation:
Gene
Promoter
Pearson corr. coef.
P-value
Plot
rstA
0.93
2.3e-02
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Activity profile of RstA motif
Aerobic_1_1
Aerobic_2_1
Aerobic_3_1
Anaerobic_1_1
Anaerobic_3_1
−0.3
−0.2
−0.1
0
0.1
0.2
0.3
0.4
activity (log2(tpm) per TFBS)
plotly-logomark
Sorted Z-values of RstA motif
−1
−0.5
0
0.5
1
Aerobic_3_1
Aerobic_1_1
Aerobic_2_1
Anaerobic_1_1
Anaerobic_3_1
Z-value
plotly-logomark
Top targets:
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Promoter
Log-likelihood
Transcript
Gene
Gene Info
csgDEFG
Show fit
7.23
csgG
Links
RegulonDB
EcoCyc
Show fit
csgF
Links
RegulonDB
EcoCyc
Show fit
csgE
Links
RegulonDB
EcoCyc
Show fit
csgD
Links
RegulonDB
EcoCyc
Show fit
curli secretion channel
curli assembly component
curli transport specificity factor
CsgD DNA-binding transcriptional dual regulator
ompF
Show fit
5.36
ompF
Links
RegulonDB
EcoCyc
Show fit
outer membrane porin F
asr
Show fit
3.34
asr
Links
RegulonDB
EcoCyc
Show fit
acid shock protein
Showing 1 to 3 of 3 entries
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Network of associatons between targets according to the
STRING database.
First level regulatory network of RstA
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Gene Ontology Analysis
Gene overrepresentation in biological process category:
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Log-likelihood per target
Total log-likelihood
Term
Description
1.0
7.2
GO:0043900
regulation of multi-organism process(GO:0043900) regulation of single-species biofilm formation(GO:1900190)
0.6
5.4
GO:0006855
drug transmembrane transport(GO:0006855)
0.6
3.3
GO:0010043
response to zinc ion(GO:0010043)
Showing 1 to 3 of 3 entries
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Gene overrepresentation in cellular component category:
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entries
Log-likelihood per target
Total log-likelihood
Term
Description
0.8
7.2
GO:0031246
intrinsic component of periplasmic side of cell outer membrane(GO:0031246)
1.1
5.4
GO:0046930
pore complex(GO:0046930)
0.0
3.3
GO:0042597
periplasmic space(GO:0042597)
Showing 1 to 3 of 3 entries
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Gene overrepresentation in molecular function category:
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Log-likelihood per target
Total log-likelihood
Term
Description
0.4
7.2
GO:0000987
bacterial-type RNA polymerase core promoter proximal region sequence-specific DNA binding(GO:0000986) core promoter proximal region sequence-specific DNA binding(GO:0000987) core promoter proximal region DNA binding(GO:0001159)
1.8
5.4
GO:0022885
bacteriocin transmembrane transporter activity(GO:0022885) colicin transmembrane transporter activity(GO:0042912)
Showing 1 to 2 of 2 entries
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