GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Arid3a Links NCBI RGD Ensembl	ENSRNOG00000026435	AT-rich interaction domain 3A

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Arid3a	rn6_v1_chr7_-_12598370_12598370	0.67	2.1e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr11_+_84827062 Show fit	0.09	ENSRNOT00000058006	A930003A15Rik Links NCBI RGD Ensembl Show fit	RIKEN cDNA A930003A15 gene
chr9_-_66019065 Show fit	0.09	ENSRNOT00000088729	Als2 Links NCBI RGD Ensembl Show fit	ALS2, alsin Rho guanine nucleotide exchange factor
chrX_-_40086870 Show fit	0.08	ENSRNOT00000010027	Smpx Links NCBI RGD Ensembl Show fit	small muscle protein, X-linked
chr3_-_66279155 Show fit	0.06	ENSRNOT00000079887	Cerkl Links NCBI RGD Ensembl Show fit	ceramide kinase-like
chr1_-_190370499 Show fit	0.06	ENSRNOT00000084389	AABR07005618.1 Links NCBI RGD Ensembl Show fit
chr10_-_59883839 Show fit	0.05	ENSRNOT00000093579	Aspa Links NCBI RGD Ensembl Show fit	aspartoacylase
chr10_-_103848035 Show fit	0.04	ENSRNOT00000029001	Fads6 Links NCBI RGD Ensembl Show fit	fatty acid desaturase 6
chr6_-_126710854 Show fit	0.04	ENSRNOT00000081127 ENSRNOT00000064914	Btbd7 Links NCBI RGD Ensembl Show fit	BTB domain containing 7
chr15_-_110046687 Show fit	0.04	ENSRNOT00000057404 ENSRNOT00000006624 ENSRNOT00000089695	Nalcn Links NCBI RGD Ensembl Show fit	sodium leak channel, non-selective
chr13_-_34251942 Show fit	0.04	ENSRNOT00000044095	Tsn Links NCBI RGD Ensembl Show fit	translin
chr5_-_128333805 Show fit	0.03	ENSRNOT00000037523	Zfyve9 Links NCBI RGD Ensembl Show fit	zinc finger FYVE-type containing 9
chr1_+_87224677 Show fit	0.03	ENSRNOT00000028070	Ppp1r14a Links NCBI RGD Ensembl Show fit	protein phosphatase 1, regulatory (inhibitor) subunit 14A
chr3_+_150686638 Show fit	0.03	ENSRNOT00000078235	Itch Links NCBI RGD Ensembl Show fit	itchy E3 ubiquitin protein ligase
chr4_-_98305173 Show fit	0.03	ENSRNOT00000010151	Il23r Links NCBI RGD Ensembl Show fit	interleukin 23 receptor
chr18_+_16146447 Show fit	0.03	ENSRNOT00000022117	Galnt1 Links NCBI RGD Ensembl Show fit	polypeptide N-acetylgalactosaminyltransferase 1
chr1_+_204959174 Show fit	0.03	ENSRNOT00000023257	Zranb1 Links NCBI RGD Ensembl Show fit	zinc finger RANBP2-type containing 1
chr2_-_210454737 Show fit	0.03	ENSRNOT00000079993	Ahcyl1 Links NCBI RGD Ensembl Show fit	adenosylhomocysteinase-like 1
chr1_-_189182306 Show fit	0.02	ENSRNOT00000021249	Gp2 Links NCBI RGD Ensembl Show fit	glycoprotein 2
chr11_-_71135493 Show fit	0.02	ENSRNOT00000050535	Fyttd1 Links NCBI RGD Ensembl Show fit	forty-two-three domain containing 1
chr15_-_4055539 Show fit	0.02	ENSRNOT00000090352	Sec24c Links NCBI RGD Ensembl Show fit	SEC24 homolog C, COPII coat complex component
chr6_-_136436818 Show fit	0.02	ENSRNOT00000082600	Ppp1r13b Links NCBI RGD Ensembl Show fit	protein phosphatase 1, regulatory subunit 13B
chr13_+_98231326 Show fit	0.02	ENSRNOT00000003837	Cdc42bpa Links NCBI RGD Ensembl Show fit	CDC42 binding protein kinase alpha
chr7_+_116671948 Show fit	0.02	ENSRNOT00000077773 ENSRNOT00000029711	Gli4 Links NCBI RGD Ensembl Show fit	GLI family zinc finger 4
chr14_-_86333424 Show fit	0.02	ENSRNOT00000083191	Nudcd3 Links NCBI RGD Ensembl Show fit	NudC domain containing 3
chr8_-_124399494 Show fit	0.02	ENSRNOT00000037883	Tgfbr2 Links NCBI RGD Ensembl Show fit	transforming growth factor, beta receptor 2
chr20_-_5123073 Show fit	0.02	ENSRNOT00000001126	Apom Links NCBI RGD Ensembl Show fit	apolipoprotein M
chrX_-_63182385 Show fit	0.02	ENSRNOT00000076613	Zfx Links NCBI RGD Ensembl Show fit	zinc finger protein X-linked
chr1_+_156552328 Show fit	0.02	ENSRNOT00000055401	Dlg2 Links NCBI RGD Ensembl Show fit	discs large MAGUK scaffold protein 2
chr8_+_70708873 Show fit	0.02	ENSRNOT00000045106	Parp16 Links NCBI RGD Ensembl Show fit	poly (ADP-ribose) polymerase family, member 16
chr3_+_48096954 Show fit	0.02	ENSRNOT00000068238 ENSRNOT00000064344 ENSRNOT00000044638	Slc4a10 Links NCBI RGD Ensembl Show fit	solute carrier family 4 member 10
chr6_-_51018050 Show fit	0.02	ENSRNOT00000082691	Gpr22 Links NCBI RGD Ensembl Show fit	G protein-coupled receptor 22
chr6_-_107325345 Show fit	0.02	ENSRNOT00000049481 ENSRNOT00000042594 ENSRNOT00000013026	Numb Links NCBI RGD Ensembl Show fit	NUMB, endocytic adaptor protein
chr8_-_93390305 Show fit	0.02	ENSRNOT00000056930	Ibtk Links NCBI RGD Ensembl Show fit	inhibitor of Bruton tyrosine kinase
chr13_+_98311827 Show fit	0.02	ENSRNOT00000082844	Cdc42bpa Links NCBI RGD Ensembl Show fit	CDC42 binding protein kinase alpha
chr2_-_210116038 Show fit	0.02	ENSRNOT00000074950	LOC684509 Links NCBI RGD Ensembl Show fit	similar to NADH-ubiquinone oxidoreductase B9 subunit (Complex I-B9) (CI-B9)
chr12_-_38916237 Show fit	0.02	ENSRNOT00000074517	Tmem120b Links NCBI RGD Ensembl Show fit	transmembrane protein 120B
chr12_-_1195591 Show fit	0.02	ENSRNOT00000001446	Stard13 Links NCBI RGD Ensembl Show fit	StAR-related lipid transfer domain containing 13
chr9_-_65442257 Show fit	0.02	ENSRNOT00000037660	Fam126b Links NCBI RGD Ensembl Show fit	family with sequence similarity 126, member B
chr1_-_77844189 Show fit	0.02	ENSRNOT00000017555	Gltscr2 Links NCBI RGD Ensembl Show fit	glioma tumor suppressor candidate region gene 2
chr14_+_39964588 Show fit	0.02	ENSRNOT00000003240	Gabrg1 Links NCBI RGD Ensembl Show fit	gamma-aminobutyric acid type A receptor gamma 1 subunit
chr4_-_155690869 Show fit	0.02	ENSRNOT00000012216	C3ar1 Links NCBI RGD Ensembl Show fit	complement C3a receptor 1
chr4_-_81241152 Show fit	0.02	ENSRNOT00000015325 ENSRNOT00000015152	Hnrnpa2b1 Links NCBI RGD Ensembl Show fit	heterogeneous nuclear ribonucleoprotein A2/B1
chr17_+_84881414 Show fit	0.02	ENSRNOT00000034157	Mllt10 Links NCBI RGD Ensembl Show fit	myeloid/lymphoid or mixed-lineage leukemia; translocated to, 10
chr1_+_95397991 Show fit	0.02	ENSRNOT00000039649	Zfp939 Links NCBI RGD Ensembl Show fit	zinc finger protein 939
chr11_-_60547201 Show fit	0.02	ENSRNOT00000093151	Btla Links NCBI RGD Ensembl Show fit	B and T lymphocyte associated
chr14_-_28967980 Show fit	0.02	ENSRNOT00000048175	Adgrl3 Links NCBI RGD Ensembl Show fit	adhesion G protein-coupled receptor L3
chr5_-_12199283 Show fit	0.02	ENSRNOT00000007769	Pcmtd1 Links NCBI RGD Ensembl Show fit	protein-L-isoaspartate (D-aspartate) O-methyltransferase domain containing 1
chr1_-_189181901 Show fit	0.02	ENSRNOT00000092022	Gp2 Links NCBI RGD Ensembl Show fit	glycoprotein 2
chr1_+_99749936 Show fit	0.02	ENSRNOT00000025299	Klk7 Links NCBI RGD Ensembl Show fit	kallikrein-related peptidase 7
chr14_-_44078897 Show fit	0.02	ENSRNOT00000031792	N4bp2 Links NCBI RGD Ensembl Show fit	NEDD4 binding protein 2
chr7_-_63045728 Show fit	0.02	ENSRNOT00000039532	Lemd3 Links NCBI RGD Ensembl Show fit	LEM domain containing 3
chr19_+_55206455 Show fit	0.02	ENSRNOT00000039273	Zc3h18 Links NCBI RGD Ensembl Show fit	zinc finger CCCH-type containing 18
chr14_+_104394200 Show fit	0.01	ENSRNOT00000088356	AABR07016566.1 Links NCBI RGD Ensembl Show fit
chr12_-_21746236 Show fit	0.01	ENSRNOT00000001869	LOC102550456 Links NCBI RGD Ensembl Show fit	TSC22 domain family protein 4-like
chr9_+_77834091 Show fit	0.01	ENSRNOT00000033459	Vwc2l Links NCBI RGD Ensembl Show fit	von Willebrand factor C domain-containing protein 2-like
chr4_-_161658519 Show fit	0.01	ENSRNOT00000007634 ENSRNOT00000067895	Tulp3 Links NCBI RGD Ensembl Show fit	tubby-like protein 3
chr5_+_36566783 Show fit	0.01	ENSRNOT00000077650	Fbxl4 Links NCBI RGD Ensembl Show fit	F-box and leucine-rich repeat protein 4
chr3_-_64766472 Show fit	0.01	ENSRNOT00000037684	Cwc22 Links NCBI RGD Ensembl Show fit	CWC22 spliceosome associated protein homolog
chr8_+_59420123 Show fit	0.01	ENSRNOT00000077922	Ireb2 Links NCBI RGD Ensembl Show fit	iron responsive element binding protein 2
chr10_+_97771264 Show fit	0.01	ENSRNOT00000005257	Arsg Links NCBI RGD Ensembl Show fit	arylsulfatase G
chr1_+_64740487 Show fit	0.01	ENSRNOT00000081213	LOC103691005 Links NCBI RGD Ensembl Show fit	zinc finger protein 679-like
chr20_+_27212724 Show fit	0.01	ENSRNOT00000032600	Hnrnph3 Links NCBI RGD Ensembl Show fit	heterogeneous nuclear ribonucleoprotein H3
chr11_+_20474483 Show fit	0.01	ENSRNOT00000082417 ENSRNOT00000002895	Ncam2 Links NCBI RGD Ensembl Show fit	neural cell adhesion molecule 2
chr15_-_6587367 Show fit	0.01	ENSRNOT00000038449	Zfp385d Links NCBI RGD Ensembl Show fit	zinc finger protein 385D
chr13_+_50873605 Show fit	0.01	ENSRNOT00000004382	Fmod Links NCBI RGD Ensembl Show fit	fibromodulin
chr10_+_61640015 Show fit	0.01	ENSRNOT00000092714	Mettl16 Links NCBI RGD Ensembl Show fit	methyltransferase like 16
chr1_-_185569190 Show fit	0.01	ENSRNOT00000090773	RGD1311703 Links NCBI RGD Ensembl Show fit	similar to sid2057p
chr4_+_5841998 Show fit	0.01	ENSRNOT00000010025	Xrcc2 Links NCBI RGD Ensembl Show fit	X-ray repair cross complementing 2
chr8_-_114010277 Show fit	0.01	ENSRNOT00000045087	Atp2c1 Links NCBI RGD Ensembl Show fit	ATPase secretory pathway Ca2+ transporting 1
chr17_+_1305016 Show fit	0.01	ENSRNOT00000025965	Ercc6l2 Links NCBI RGD Ensembl Show fit	ERCC excision repair 6 like 2
chr1_+_68436917 Show fit	0.01	ENSRNOT00000088586	LOC108348118 Links NCBI RGD Ensembl Show fit	leucyl-cystinyl aminopeptidase
chr9_+_111597037 Show fit	0.01	ENSRNOT00000021758	Fer Links NCBI RGD Ensembl Show fit	FER tyrosine kinase
chr18_+_30840868 Show fit	0.01	ENSRNOT00000027026	Pcdhga5 Links NCBI RGD Ensembl Show fit	protocadherin gamma subfamily A, 5
chr3_+_47677720 Show fit	0.01	ENSRNOT00000065340	Tbr1 Links NCBI RGD Ensembl Show fit	T-box, brain, 1
chr12_+_51960262 Show fit	0.01	ENSRNOT00000084214	Ep400 Links NCBI RGD Ensembl Show fit	E1A binding protein p400
chr1_+_68436593 Show fit	0.01	ENSRNOT00000080325	LOC108348118 Links NCBI RGD Ensembl Show fit	leucyl-cystinyl aminopeptidase
chr10_-_11877584 Show fit	0.01	ENSRNOT00000078577	Cluap1 Links NCBI RGD Ensembl Show fit	clusterin associated protein 1
chr11_-_4332255 Show fit	0.01	ENSRNOT00000087133	Cadm2 Links NCBI RGD Ensembl Show fit	cell adhesion molecule 2
chr11_-_72109964 Show fit	0.01	ENSRNOT00000058917	AABR07034445.1 Links NCBI RGD Ensembl Show fit
chr8_+_70760922 Show fit	0.01	ENSRNOT00000044887	Cilp Links NCBI RGD Ensembl Show fit	cartilage intermediate layer protein
chr6_-_146470456 Show fit	0.01	ENSRNOT00000018479	RGD1560883 Links NCBI RGD Ensembl Show fit	similar to KIAA0825 protein
chr7_-_12601674 Show fit	0.01	ENSRNOT00000093489	Arid3a Links NCBI RGD Ensembl Show fit	AT-rich interaction domain 3A
chr16_+_8737974 Show fit	0.01	ENSRNOT00000064255	Ercc6 Links NCBI RGD Ensembl Show fit	ERCC excision repair 6, chromatin remodeling factor
chr8_+_103938520 Show fit	0.01	ENSRNOT00000067835	Gk5 Links NCBI RGD Ensembl Show fit	glycerol kinase 5 (putative)
chr2_+_186703541 Show fit	0.01	ENSRNOT00000093342	Fcrl1 Links NCBI RGD Ensembl Show fit	Fc receptor-like 1
chr9_-_5329305 Show fit	0.01	ENSRNOT00000078055	Slc5a7 Links NCBI RGD Ensembl Show fit	solute carrier family 5 member 7
chr16_-_14382641 Show fit	0.01	ENSRNOT00000018723	Ghitm Links NCBI RGD Ensembl Show fit	growth hormone inducible transmembrane protein
chr12_-_40332612 Show fit	0.01	ENSRNOT00000001691	Atxn2 Links NCBI RGD Ensembl Show fit	ataxin 2
chr10_+_76320041 Show fit	0.01	ENSRNOT00000037693	Coil Links NCBI RGD Ensembl Show fit	coilin
chr5_-_126323799 Show fit	0.01	ENSRNOT00000089934	Mroh7 Links NCBI RGD Ensembl Show fit	maestro heat-like repeat family member 7
chr6_-_108120579 Show fit	0.00	ENSRNOT00000041163	Entpd5 Links NCBI RGD Ensembl Show fit	ectonucleoside triphosphate diphosphohydrolase 5
chr16_-_80850340 Show fit	0.00	ENSRNOT00000000124	Champ1 Links NCBI RGD Ensembl Show fit	chromosome alignment maintaining phosphoprotein 1
chrX_-_105417323 Show fit	0.00	ENSRNOT00000015494	Gla Links NCBI RGD Ensembl Show fit	galactosidase, alpha
chr3_+_63510293 Show fit	0.00	ENSRNOT00000058093	Dfnb59 Links NCBI RGD Ensembl Show fit	deafness, autosomal recessive 59
chr7_-_27214236 Show fit	0.00	ENSRNOT00000034213	Tdg Links NCBI RGD Ensembl Show fit	thymine-DNA glycosylase
chr5_-_25721072 Show fit	0.00	ENSRNOT00000021839	Tmem67 Links NCBI RGD Ensembl Show fit	transmembrane protein 67
chr8_-_116993193 Show fit	0.00	ENSRNOT00000026327	Dag1 Links NCBI RGD Ensembl Show fit	dystroglycan 1
chr5_+_120340646 Show fit	0.00	ENSRNOT00000086259 ENSRNOT00000086539	Dnajc6 Links NCBI RGD Ensembl Show fit	DnaJ heat shock protein family (Hsp40) member C6
chr9_+_42945358 Show fit	0.00	ENSRNOT00000059806	Fer1l5 Links NCBI RGD Ensembl Show fit	fer-1-like family member 5
chr1_+_61268248 Show fit	0.00	ENSRNOT00000082730	LOC102552527 Links NCBI RGD Ensembl Show fit	zinc finger protein 420-like
chr12_-_29958050 Show fit	0.00	ENSRNOT00000058725	Tmem248 Links NCBI RGD Ensembl Show fit	transmembrane protein 248
chr14_+_100415668 Show fit	0.00	ENSRNOT00000008057	C1d Links NCBI RGD Ensembl Show fit	C1D nuclear receptor co-repressor
chr12_+_46869836 Show fit	0.00	ENSRNOT00000084421	Sirt4 Links NCBI RGD Ensembl Show fit	sirtuin 4
chr18_-_31749647 Show fit	0.00	ENSRNOT00000044287	Nr3c1 Links NCBI RGD Ensembl Show fit	nuclear receptor subfamily 3, group C, member 1
chr5_+_103251986 Show fit	0.00	ENSRNOT00000008757	Cntln Links NCBI RGD Ensembl Show fit	centlein
chr8_-_109621408 Show fit	0.00	ENSRNOT00000087398	Ppp2r3a Links NCBI RGD Ensembl Show fit	protein phosphatase 2, regulatory subunit B'', alpha
chr12_-_29919320 Show fit	0.00	ENSRNOT00000038092	Tyw1 Links NCBI RGD Ensembl Show fit	tRNA-yW synthesizing protein 1 homolog
chr6_+_99444013 Show fit	0.00	ENSRNOT00000058642	Ppp1r36 Links NCBI RGD Ensembl Show fit	protein phosphatase 1, regulatory subunit 36
chr8_+_82038967 Show fit	0.00	ENSRNOT00000079535	Myo5a Links NCBI RGD Ensembl Show fit	myosin VA
chr7_-_12432130 Show fit	0.00	ENSRNOT00000077301	Atp5d Links NCBI RGD Ensembl Show fit	ATP synthase, H+ transporting, mitochondrial F1 complex, delta subunit
chr2_+_189857587 Show fit	0.00	ENSRNOT00000048214	Ilf2 Links NCBI RGD Ensembl Show fit	interleukin enhancer binding factor 2
chr4_+_61850348 Show fit	0.00	ENSRNOT00000013423	Akr1b7 Links NCBI RGD Ensembl Show fit	aldo-keto reductase family 1, member B7
chr16_+_70644474 Show fit	0.00	ENSRNOT00000045955	LOC100359503 Links NCBI RGD Ensembl Show fit	ribosomal protein S28-like
chrX_-_64726210 Show fit	0.00	ENSRNOT00000076012 ENSRNOT00000086265	Asb12 Links NCBI RGD Ensembl Show fit	ankyrin repeat and SOCS box-containing 12
chr2_+_52397175 Show fit	0.00	ENSRNOT00000082614	Ccl28 Links NCBI RGD Ensembl Show fit	C-C motif chemokine ligand 28
chr17_-_53713408 Show fit	0.00	ENSRNOT00000022445	LOC100912163 Links NCBI RGD Ensembl Show fit	AT-rich interactive domain-containing protein 4B-like
chr19_-_44095250 Show fit	0.00	ENSRNOT00000074824	Tmem170a Links NCBI RGD Ensembl Show fit	transmembrane protein 170A
chr9_-_86103158 Show fit	0.00	ENSRNOT00000021528	Cul3 Links NCBI RGD Ensembl Show fit	cullin 3
chr17_-_53915076 Show fit	0.00	ENSRNOT00000010836	Arid4b Links NCBI RGD Ensembl Show fit	AT-rich interaction domain 4B
chr8_-_77599781 Show fit	0.00	ENSRNOT00000087980	Aqp9 Links NCBI RGD Ensembl Show fit	aquaporin 9
chr3_+_95939260 Show fit	0.00	ENSRNOT00000041291	AABR07053188.1 Links NCBI RGD Ensembl Show fit
chr17_+_54181419 Show fit	0.00	ENSRNOT00000023861	Kif5b Links NCBI RGD Ensembl Show fit	kinesin family member 5B
chr10_+_65272849 Show fit	0.00	ENSRNOT00000014386	Eral1 Links NCBI RGD Ensembl Show fit	Era-like 12S mitochondrial rRNA chaperone 1
chr2_+_128675814 Show fit	0.00	ENSRNOT00000058366	RGD1359508 Links NCBI RGD Ensembl Show fit	similar to protein C33A12.3

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0002386	immune response in mucosal-associated lymphoid tissue(GO:0002386)
0.0	0.1	GO:0051036	regulation of endosome size(GO:0051036)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0005927	muscle tendon junction(GO:0005927)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0019807	aspartoacylase activity(GO:0019807)
0.0	0.1	GO:0001729	ceramide kinase activity(GO:0001729)