GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Barhl1 Links NCBI RGD Ensembl	ENSRNOG00000013209	BarH-like homeobox 1

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Barhl1	rn6_v1_chr3_-_7498555_7498555	-0.85	7.1e-02	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr1_+_53220397 Show fit	0.12	ENSRNOT00000089989	AABR07001573.1 Links NCBI RGD Ensembl Show fit
chr8_-_104155775 Show fit	0.11	ENSRNOT00000042885	LOC102550734 Links NCBI RGD Ensembl Show fit	60S ribosomal protein L31-like
chr13_+_91054974 Show fit	0.11	ENSRNOT00000091089	Crp Links NCBI RGD Ensembl Show fit	C-reactive protein
chr7_+_143122269 Show fit	0.10	ENSRNOT00000082542 ENSRNOT00000045495 ENSRNOT00000081386 ENSRNOT00000067422	Krt86 Links NCBI RGD Ensembl Show fit	keratin 86
chr16_+_22979444 Show fit	0.08	ENSRNOT00000017822	Csgalnact1 Links NCBI RGD Ensembl Show fit	chondroitin sulfate N-acetylgalactosaminyltransferase 1
chr2_-_30340103 Show fit	0.05	ENSRNOT00000024023 ENSRNOT00000067722	Bdp1 Links NCBI RGD Ensembl Show fit	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB
chr4_-_66624912 Show fit	0.05	ENSRNOT00000064891	Hipk2 Links NCBI RGD Ensembl Show fit	homeodomain interacting protein kinase 2
chr9_+_73334618 Show fit	0.05	ENSRNOT00000092717	Map2 Links NCBI RGD Ensembl Show fit	microtubule-associated protein 2
chr4_+_22859622 Show fit	0.05	ENSRNOT00000073501 ENSRNOT00000068410	Adam22 Links NCBI RGD Ensembl Show fit	ADAM metallopeptidase domain 22
chr3_+_154437571 Show fit	0.04	ENSRNOT00000019331	AABR07054456.1 Links NCBI RGD Ensembl Show fit
chr9_-_63641400 Show fit	0.04	ENSRNOT00000087684	Satb2 Links NCBI RGD Ensembl Show fit	SATB homeobox 2
chrX_+_14578264 Show fit	0.04	ENSRNOT00000038994	Cybb Links NCBI RGD Ensembl Show fit	cytochrome b-245 beta chain
chr17_-_52477575 Show fit	0.04	ENSRNOT00000081290	Gli3 Links NCBI RGD Ensembl Show fit	GLI family zinc finger 3
chr4_-_85174931 Show fit	0.04	ENSRNOT00000014324 ENSRNOT00000088085	Nod1 Links NCBI RGD Ensembl Show fit	nucleotide-binding oligomerization domain containing 1
chr1_+_205911552 Show fit	0.04	ENSRNOT00000024751	Fank1 Links NCBI RGD Ensembl Show fit	fibronectin type 3 and ankyrin repeat domains 1
chr2_-_243475639 Show fit	0.03	ENSRNOT00000089222	RGD1309170 Links NCBI RGD Ensembl Show fit	similar to hypothetical protein DKFZp434G072
chr6_-_50941248 Show fit	0.03	ENSRNOT00000084533	Dus4l Links NCBI RGD Ensembl Show fit	dihydrouridine synthase 4-like
chrX_+_123751089 Show fit	0.03	ENSRNOT00000092384	Nkap Links NCBI RGD Ensembl Show fit	NFKB activating protein
chr11_-_88888377 Show fit	0.03	ENSRNOT00000034902	Yars2 Links NCBI RGD Ensembl Show fit	tyrosyl-tRNA synthetase 2
chr8_+_5606592 Show fit	0.03	ENSRNOT00000011727	Mmp12 Links NCBI RGD Ensembl Show fit	matrix metallopeptidase 12
chr14_+_17210733 Show fit	0.03	ENSRNOT00000003075	Cxcl10 Links NCBI RGD Ensembl Show fit	C-X-C motif chemokine ligand 10
chr2_+_69415057 Show fit	0.03	ENSRNOT00000013152	Cdh10 Links NCBI RGD Ensembl Show fit	cadherin 10
chr1_+_266844480 Show fit	0.03	ENSRNOT00000027482	Taf5 Links NCBI RGD Ensembl Show fit	TATA-box binding protein associated factor 5
chr8_+_128972311 Show fit	0.03	ENSRNOT00000025460	Myrip Links NCBI RGD Ensembl Show fit	myosin VIIA and Rab interacting protein
chr20_-_32296840 Show fit	0.03	ENSRNOT00000080727	Stox1 Links NCBI RGD Ensembl Show fit	storkhead box 1
chr3_+_104749051 Show fit	0.02	ENSRNOT00000000010	Tmco5b Links NCBI RGD Ensembl Show fit	transmembrane and coiled-coil domains 5B
chr11_-_45124423 Show fit	0.02	ENSRNOT00000046383	Filip1l Links NCBI RGD Ensembl Show fit	filamin A interacting protein 1-like
chr14_+_59611434 Show fit	0.02	ENSRNOT00000065366	Cckar Links NCBI RGD Ensembl Show fit	cholecystokinin A receptor
chr3_+_103753238 Show fit	0.02	ENSRNOT00000007144	Slc12a6 Links NCBI RGD Ensembl Show fit	solute carrier family 12, member 6
chr16_-_3765917 Show fit	0.02	ENSRNOT00000088284	Duxbl1 Links NCBI RGD Ensembl Show fit	double homeobox B-like 1
chr1_-_140835151 Show fit	0.02	ENSRNOT00000032174	Hapln3 Links NCBI RGD Ensembl Show fit	hyaluronan and proteoglycan link protein 3
chr18_+_4325875 Show fit	0.02	ENSRNOT00000073771	Impact Links NCBI RGD Ensembl Show fit	impact RWD domain protein
chr16_-_36161089 Show fit	0.02	ENSRNOT00000017888	Scrg1 Links NCBI RGD Ensembl Show fit	stimulator of chondrogenesis 1
chr3_-_104502471 Show fit	0.02	ENSRNOT00000040306	Ryr3 Links NCBI RGD Ensembl Show fit	ryanodine receptor 3
chr3_-_8615532 Show fit	0.02	ENSRNOT00000021132	Wdr34 Links NCBI RGD Ensembl Show fit	WD repeat domain 34
chr6_-_75670135 Show fit	0.02	ENSRNOT00000007300	Snx6 Links NCBI RGD Ensembl Show fit	sorting nexin 6
chr3_+_114102875 Show fit	0.02	ENSRNOT00000023209	Trim69 Links NCBI RGD Ensembl Show fit	tripartite motif-containing 69
chr3_+_114900343 Show fit	0.02	ENSRNOT00000068129	Sqrdl Links NCBI RGD Ensembl Show fit	sulfide quinone reductase-like (yeast)
chr2_+_198721724 Show fit	0.02	ENSRNOT00000043535	Ankrd34a Links NCBI RGD Ensembl Show fit	ankyrin repeat domain 34A
chr10_-_65766050 Show fit	0.01	ENSRNOT00000013639	Sarm1 Links NCBI RGD Ensembl Show fit	sterile alpha and TIR motif containing 1
chr13_+_42220251 Show fit	0.01	ENSRNOT00000078185	AABR07020815.1 Links NCBI RGD Ensembl Show fit
chr10_+_10530365 Show fit	0.01	ENSRNOT00000003843	Eef2kmt Links NCBI RGD Ensembl Show fit	eukaryotic elongation factor 2 lysine methyltransferase
chr8_+_85503224 Show fit	0.01	ENSRNOT00000012348	Gsta4 Links NCBI RGD Ensembl Show fit	glutathione S-transferase alpha 4
chr10_+_90377103 Show fit	0.01	ENSRNOT00000040472	Grn Links NCBI RGD Ensembl Show fit	granulin precursor
chr10_+_90376933 Show fit	0.01	ENSRNOT00000028557	Grn Links NCBI RGD Ensembl Show fit	granulin precursor
chr4_-_70934295 Show fit	0.01	ENSRNOT00000020616	Trpv6 Links NCBI RGD Ensembl Show fit	transient receptor potential cation channel, subfamily V, member 6
chr4_-_183374195 Show fit	0.01	ENSRNOT00000073927 ENSRNOT00000074740 ENSRNOT00000070907	Caprin2 Links NCBI RGD Ensembl Show fit	caprin family member 2
chr2_-_170301348 Show fit	0.01	ENSRNOT00000088131	Si Links NCBI RGD Ensembl Show fit	sucrase-isomaltase
chr18_+_29993361 Show fit	0.01	ENSRNOT00000075810	Pcdha4 Links NCBI RGD Ensembl Show fit	protocadherin alpha 4
chr12_+_12859661 Show fit	0.01	ENSRNOT00000001404	Usp42 Links NCBI RGD Ensembl Show fit	ubiquitin specific peptidase 42
chr3_-_59166356 Show fit	0.01	ENSRNOT00000047713	AABR07052519.1 Links NCBI RGD Ensembl Show fit
chrX_-_118459355 Show fit	0.01	ENSRNOT00000084465	Il13ra2 Links NCBI RGD Ensembl Show fit	interleukin 13 receptor subunit alpha 2
chr1_+_185863043 Show fit	0.01	ENSRNOT00000079072	Sox6 Links NCBI RGD Ensembl Show fit	SRY box 6
chr10_-_55851235 Show fit	0.01	ENSRNOT00000010790	Gucy2d Links NCBI RGD Ensembl Show fit	guanylate cyclase 2D, retinal
chr20_+_3992496 Show fit	0.01	ENSRNOT00000082047	Psmb8 Links NCBI RGD Ensembl Show fit	proteasome subunit beta 8
chr3_+_101791337 Show fit	0.01	ENSRNOT00000046937	Slc5a12 Links NCBI RGD Ensembl Show fit	solute carrier family 5 member 12
chr3_-_112985318 Show fit	0.01	ENSRNOT00000015556	Epb42 Links NCBI RGD Ensembl Show fit	erythrocyte membrane protein band 4.2
chr13_+_47572219 Show fit	0.01	ENSRNOT00000088449 ENSRNOT00000087664 ENSRNOT00000005853	Pigr Links NCBI RGD Ensembl Show fit	polymeric immunoglobulin receptor
chr4_+_31333970 Show fit	0.01	ENSRNOT00000064866	LOC100911994 Links NCBI RGD Ensembl Show fit	coiled-coil domain-containing protein 132-like
chr1_-_73732118 Show fit	0.01	ENSRNOT00000077964	Leng8 Links NCBI RGD Ensembl Show fit	leukocyte receptor cluster member 8
chr15_+_106434177 Show fit	0.01	ENSRNOT00000015271	Farp1 Links NCBI RGD Ensembl Show fit	FERM, ARH/RhoGEF and pleckstrin domain protein 1
chr17_+_47302272 Show fit	0.01	ENSRNOT00000090021	Nme8 Links NCBI RGD Ensembl Show fit	NME/NM23 family member 8
chr5_+_61657507 Show fit	0.01	ENSRNOT00000013228	Tmod1 Links NCBI RGD Ensembl Show fit	tropomodulin 1
chr11_+_43194348 Show fit	0.01	ENSRNOT00000075303	Olr1532 Links NCBI RGD Ensembl Show fit	olfactory receptor 1532
chr19_-_25955371 Show fit	0.01	ENSRNOT00000004042 ENSRNOT00000084123	Rad23a Links NCBI RGD Ensembl Show fit	RAD23 homolog A, nucleotide excision repair protein
chr20_-_46044738 Show fit	0.00	ENSRNOT00000000343	Fig4 Links NCBI RGD Ensembl Show fit	FIG4 phosphoinositide 5-phosphatase
chr8_-_55171718 Show fit	0.00	ENSRNOT00000080736	LOC689959 Links NCBI RGD Ensembl Show fit	hypothetical protein LOC689959
chr1_-_73226777 Show fit	0.00	ENSRNOT00000025080	Ncr1 Links NCBI RGD Ensembl Show fit	natural cytotoxicity triggering receptor 1
chr9_+_47536824 Show fit	0.00	ENSRNOT00000049349	Tmem182 Links NCBI RGD Ensembl Show fit	transmembrane protein 182
chr4_-_164406146 Show fit	0.00	ENSRNOT00000090110	Klra22 Links NCBI RGD Ensembl Show fit	killer cell lectin-like receptor subfamily A, member 22
chr10_+_96661696 Show fit	0.00	ENSRNOT00000077567	AABR07030630.1 Links NCBI RGD Ensembl Show fit
chr9_-_82477136 Show fit	0.00	ENSRNOT00000026753 ENSRNOT00000089555	Resp18 Links NCBI RGD Ensembl Show fit	regulated endocrine-specific protein 18
chr3_-_61488696 Show fit	0.00	ENSRNOT00000083045	Lnpk Links NCBI RGD Ensembl Show fit	lunapark, ER junction formation factor
chr1_-_165606375 Show fit	0.00	ENSRNOT00000024290	Mrpl48 Links NCBI RGD Ensembl Show fit	mitochondrial ribosomal protein L48
chr10_-_90127600 Show fit	0.00	ENSRNOT00000028368	Lsm12 Links NCBI RGD Ensembl Show fit	LSM12 homolog
chr18_-_36579403 Show fit	0.00	ENSRNOT00000025284	Lars Links NCBI RGD Ensembl Show fit	leucyl-tRNA synthetase
chr1_+_279896973 Show fit	0.00	ENSRNOT00000068119	Pnliprp2 Links NCBI RGD Ensembl Show fit	pancreatic lipase related protein 2
chr3_+_94549180 Show fit	0.00	ENSRNOT00000016318	Cstf3 Links NCBI RGD Ensembl Show fit	cleavage stimulation factor subunit 3

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0019276	UDP-N-acetylgalactosamine metabolic process(GO:0019276)
0.0	0.1	GO:0032929	negative regulation of superoxide anion generation(GO:0032929)
0.0	0.0	GO:1904845	response to L-glutamine(GO:1904844) cellular response to L-glutamine(GO:1904845)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0047237	glucuronylgalactosylproteoglycan 4-beta-N-acetylgalactosaminyltransferase activity(GO:0047237)
0.0	0.2	GO:0046790	virion binding(GO:0046790)
0.0	0.1	GO:0000995	transcription factor activity, core RNA polymerase III binding(GO:0000995) TFIIIC-class transcription factor binding(GO:0001156)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	REACTOME CREATION OF C4 AND C2 ACTIVATORS	Genes involved in Creation of C4 and C2 activators