GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Barhl2 Links NCBI RGD Ensembl	ENSRNOG00000002117	BarH-like homeobox 2

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Barhl2	rn6_v1_chr14_+_4362717_4362717	-0.61	2.8e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr2_-_260596777 Show fit	0.08	ENSRNOT00000009370	Lhx8 Links NCBI RGD Ensembl Show fit	LIM homeobox 8
chr3_-_122206671 Show fit	0.07	ENSRNOT00000037576	Pdyn Links NCBI RGD Ensembl Show fit	prodynorphin
chr17_-_43807540 Show fit	0.05	ENSRNOT00000074763	LOC684762 Links NCBI RGD Ensembl Show fit	similar to CG31613-PA
chr8_+_49441106 Show fit	0.05	ENSRNOT00000030152	Scn4b Links NCBI RGD Ensembl Show fit	sodium voltage-gated channel beta subunit 4
chr14_-_114047527 Show fit	0.05	ENSRNOT00000083199	AABR07016779.1 Links NCBI RGD Ensembl Show fit
chr15_+_48674380 Show fit	0.05	ENSRNOT00000018762	Fbxo16 Links NCBI RGD Ensembl Show fit	F-box protein 16
chr3_-_10196626 Show fit	0.05	ENSRNOT00000012234	Prdm12 Links NCBI RGD Ensembl Show fit	PR/SET domain 12
chr12_-_19254527 Show fit	0.04	ENSRNOT00000089349	AABR07035541.3 Links NCBI RGD Ensembl Show fit
chr16_-_49453394 Show fit	0.04	ENSRNOT00000041617	Lrp2bp Links NCBI RGD Ensembl Show fit	Lrp2 binding protein
chr11_-_83483513 Show fit	0.04	ENSRNOT00000084380	AABR07034673.1 Links NCBI RGD Ensembl Show fit
chr6_+_3375476 Show fit	0.04	ENSRNOT00000045349	LOC102551744 Links NCBI RGD Ensembl Show fit	eukaryotic translation initiation factor 1-like
chr5_-_136098013 Show fit	0.04	ENSRNOT00000089166	RGD1563714 Links NCBI RGD Ensembl Show fit	RGD1563714
chr3_+_147422095 Show fit	0.04	ENSRNOT00000006786	Angpt4 Links NCBI RGD Ensembl Show fit	angiopoietin 4
chr2_+_210880777 Show fit	0.04	ENSRNOT00000026237	Gnat2 Links NCBI RGD Ensembl Show fit	G protein subunit alpha transducin 2
chr17_-_78735324 Show fit	0.03	ENSRNOT00000036299	Cdnf Links NCBI RGD Ensembl Show fit	cerebral dopamine neurotrophic factor
chr7_+_143122269 Show fit	0.03	ENSRNOT00000082542 ENSRNOT00000045495 ENSRNOT00000081386 ENSRNOT00000067422	Krt86 Links NCBI RGD Ensembl Show fit	keratin 86
chr18_+_57727187 Show fit	0.03	ENSRNOT00000065483 ENSRNOT00000025871	Htr4 Links NCBI RGD Ensembl Show fit	5-hydroxytryptamine receptor 4
chr10_-_25910298 Show fit	0.03	ENSRNOT00000065633 ENSRNOT00000079646	Ccng1 Links NCBI RGD Ensembl Show fit	cyclin G1
chr13_-_111972603 Show fit	0.03	ENSRNOT00000007870	Hsd11b1 Links NCBI RGD Ensembl Show fit	hydroxysteroid 11-beta dehydrogenase 1
chr9_+_40817654 Show fit	0.03	ENSRNOT00000037392	AABR07067339.1 Links NCBI RGD Ensembl Show fit
chr7_-_143228060 Show fit	0.03	ENSRNOT00000088923 ENSRNOT00000012640	Krt75 Links NCBI RGD Ensembl Show fit	keratin 75
chr10_-_48038647 Show fit	0.03	ENSRNOT00000078448	Prpsap2 Links NCBI RGD Ensembl Show fit	phosphoribosyl pyrophosphate synthetase-associated protein 2
chr4_-_178168690 Show fit	0.03	ENSRNOT00000020729	Sox5 Links NCBI RGD Ensembl Show fit	SRY box 5
chr20_-_4070721 Show fit	0.03	ENSRNOT00000000523	RT1-Ba Links NCBI RGD Ensembl Show fit	RT1 class II, locus Ba
chr1_-_229639187 Show fit	0.03	ENSRNOT00000016804	Zfp91 Links NCBI RGD Ensembl Show fit	zinc finger protein 91
chr7_-_145338152 Show fit	0.03	ENSRNOT00000055268	Spt1 Links NCBI RGD Ensembl Show fit	salivary protein 1
chr5_-_159946446 Show fit	0.03	ENSRNOT00000089184	Clcnka Links NCBI RGD Ensembl Show fit	chloride voltage-gated channel Ka
chrX_-_25628272 Show fit	0.03	ENSRNOT00000086414	Mid1 Links NCBI RGD Ensembl Show fit	midline 1
chr7_+_141249044 Show fit	0.03	ENSRNOT00000084911	Aqp5 Links NCBI RGD Ensembl Show fit	aquaporin 5
chr11_-_64952687 Show fit	0.03	ENSRNOT00000087892	Popdc2 Links NCBI RGD Ensembl Show fit	popeye domain containing 2
chr7_-_145575981 Show fit	0.02	ENSRNOT00000074622	LOC102555445 Links NCBI RGD Ensembl Show fit	16.5 kDa submandibular gland glycoprotein-like
chr15_+_4850122 Show fit	0.02	ENSRNOT00000071133	Gng2 Links NCBI RGD Ensembl Show fit	G protein subunit gamma 2
chr12_-_51877624 Show fit	0.02	ENSRNOT00000056800	Chek2 Links NCBI RGD Ensembl Show fit	checkpoint kinase 2
chr2_+_189609800 Show fit	0.02	ENSRNOT00000089016	Slc39a1 Links NCBI RGD Ensembl Show fit	solute carrier family 39 member 1
chr9_-_55673704 Show fit	0.02	ENSRNOT00000066231 ENSRNOT00000081677	Tmeff2 Links NCBI RGD Ensembl Show fit	transmembrane protein with EGF-like and two follistatin-like domains 2
chr18_+_81694808 Show fit	0.02	ENSRNOT00000020446	Cyb5a Links NCBI RGD Ensembl Show fit	cytochrome b5 type A
chr5_+_150957001 Show fit	0.02	ENSRNOT00000017549	Rpa2 Links NCBI RGD Ensembl Show fit	replication protein A2
chr5_+_144106802 Show fit	0.02	ENSRNOT00000035637 ENSRNOT00000079779	Lsm10 Links NCBI RGD Ensembl Show fit	LSM10, U7 small nuclear RNA associated
chrX_+_71335491 Show fit	0.02	ENSRNOT00000076003	Nono Links NCBI RGD Ensembl Show fit	non-POU domain containing, octamer-binding
chr2_-_179704629 Show fit	0.02	ENSRNOT00000083361 ENSRNOT00000077941	Gria2 Links NCBI RGD Ensembl Show fit	glutamate ionotropic receptor AMPA type subunit 2
chr15_+_44441856 Show fit	0.02	ENSRNOT00000018006	Gnrh1 Links NCBI RGD Ensembl Show fit	gonadotropin releasing hormone 1
chr7_-_49741540 Show fit	0.02	ENSRNOT00000006523	Myf6 Links NCBI RGD Ensembl Show fit	myogenic factor 6
chr2_+_197720259 Show fit	0.02	ENSRNOT00000070919	Golph3l Links NCBI RGD Ensembl Show fit	golgi phosphoprotein 3-like
chr2_+_23289374 Show fit	0.02	ENSRNOT00000090666 ENSRNOT00000032783	Dmgdh Links NCBI RGD Ensembl Show fit	dimethylglycine dehydrogenase
chr15_-_83494423 Show fit	0.02	ENSRNOT00000037588	Dis3 Links NCBI RGD Ensembl Show fit	DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease
chr9_-_74048244 Show fit	0.02	ENSRNOT00000018293	Lancl1 Links NCBI RGD Ensembl Show fit	LanC like 1
chr3_-_46601409 Show fit	0.02	ENSRNOT00000079261	Pla2r1 Links NCBI RGD Ensembl Show fit	phospholipase A2 receptor 1
chr10_-_87248572 Show fit	0.02	ENSRNOT00000066637 ENSRNOT00000085677	Krt26 Links NCBI RGD Ensembl Show fit	keratin 26
chr5_-_115387377 Show fit	0.02	ENSRNOT00000036030 ENSRNOT00000077492	RGD1560146 Links NCBI RGD Ensembl Show fit	similar to hypothetical protein MGC34837
chr1_-_64021321 Show fit	0.02	ENSRNOT00000090819	Rps9 Links NCBI RGD Ensembl Show fit	ribosomal protein S9
chrX_-_115496045 Show fit	0.02	ENSRNOT00000051134	LOC100361854 Links NCBI RGD Ensembl Show fit	ribosomal protein S26-like
chr9_+_81644355 Show fit	0.02	ENSRNOT00000071700	Catip Links NCBI RGD Ensembl Show fit	ciliogenesis associated TTC17 interacting protein
chr10_-_86932154 Show fit	0.01	ENSRNOT00000085344	Top2a Links NCBI RGD Ensembl Show fit	topoisomerase (DNA) II alpha
chr1_+_82169620 Show fit	0.01	ENSRNOT00000088955 ENSRNOT00000068251	Prr19 Links NCBI RGD Ensembl Show fit	proline rich 19
chr2_-_112831476 Show fit	0.01	ENSRNOT00000018055	Ect2 Links NCBI RGD Ensembl Show fit	epithelial cell transforming 2
chr4_+_2055615 Show fit	0.01	ENSRNOT00000007646	Rnf32 Links NCBI RGD Ensembl Show fit	ring finger protein 32
chr17_+_17965881 Show fit	0.01	ENSRNOT00000021751	Dek Links NCBI RGD Ensembl Show fit	DEK proto-oncogene
chr10_+_34402482 Show fit	0.01	ENSRNOT00000072317	Tpcr12 Links NCBI RGD Ensembl Show fit	putative olfactory receptor
chr9_+_3238077 Show fit	0.01	ENSRNOT00000088083	RGD1559808 Links NCBI RGD Ensembl Show fit	similar to 40S ribosomal protein S26
chr16_+_14306804 Show fit	0.01	ENSRNOT00000017773	Lrit1 Links NCBI RGD Ensembl Show fit	leucine-rich repeat, Ig-like and transmembrane domains 1
chr1_+_64162672 Show fit	0.01	ENSRNOT00000089713	Tfpt Links NCBI RGD Ensembl Show fit	TCF3 (E2A) fusion partner
chr20_-_157665 Show fit	0.01	ENSRNOT00000048858 ENSRNOT00000079494	RT1-CE10 Links NCBI RGD Ensembl Show fit	RT1 class I, locus CE10
chr13_-_68360664 Show fit	0.01	ENSRNOT00000030971	Hmcn1 Links NCBI RGD Ensembl Show fit	hemicentin 1
chr10_+_43851950 Show fit	0.01	ENSRNOT00000085666	LOC691277 Links NCBI RGD Ensembl Show fit	similar to Robo-1
chr13_+_47572219 Show fit	0.01	ENSRNOT00000088449 ENSRNOT00000087664 ENSRNOT00000005853	Pigr Links NCBI RGD Ensembl Show fit	polymeric immunoglobulin receptor
chr20_+_44680449 Show fit	0.01	ENSRNOT00000000728	Traf3ip2 Links NCBI RGD Ensembl Show fit	Traf3 interacting protein 2
chr13_-_84452181 Show fit	0.01	ENSRNOT00000005060	Mael Links NCBI RGD Ensembl Show fit	maelstrom spermatogenic transposon silencer
chr10_-_15098791 Show fit	0.01	ENSRNOT00000026139	Chtf18 Links NCBI RGD Ensembl Show fit	chromosome transmission fidelity factor 18
chr11_-_32550539 Show fit	0.01	ENSRNOT00000002715	Rcan1 Links NCBI RGD Ensembl Show fit	regulator of calcineurin 1
chr6_+_69971227 Show fit	0.01	ENSRNOT00000075349	Foxg1 Links NCBI RGD Ensembl Show fit	forkhead box G1
chr1_+_81230612 Show fit	0.01	ENSRNOT00000026489	Kcnn4 Links NCBI RGD Ensembl Show fit	potassium calcium-activated channel subfamily N member 4
chr1_-_238381871 Show fit	0.01	ENSRNOT00000077601	Tmc1 Links NCBI RGD Ensembl Show fit	transmembrane channel-like 1
chr10_-_109747987 Show fit	0.01	ENSRNOT00000054958	P4hb Links NCBI RGD Ensembl Show fit	prolyl 4-hydroxylase subunit beta
chr20_-_157861 Show fit	0.01	ENSRNOT00000084461	RT1-CE10 Links NCBI RGD Ensembl Show fit	RT1 class I, locus CE10
chr8_+_60117729 Show fit	0.01	ENSRNOT00000021074	Isl2 Links NCBI RGD Ensembl Show fit	ISL LIM homeobox 2
chr11_+_73930753 Show fit	0.01	ENSRNOT00000087747	RGD1562415 Links NCBI RGD Ensembl Show fit	similar to 40S ribosomal protein S26
chr17_+_78735598 Show fit	0.01	ENSRNOT00000020854	Hspa14 Links NCBI RGD Ensembl Show fit	heat shock protein family A, member 14
chr5_+_57845819 Show fit	0.01	ENSRNOT00000017712	Nudt2 Links NCBI RGD Ensembl Show fit	nudix hydrolase 2
chr5_-_58445953 Show fit	0.01	ENSRNOT00000046102	Vcp Links NCBI RGD Ensembl Show fit	valosin-containing protein
chr3_+_100768637 Show fit	0.01	ENSRNOT00000083542	Bdnf Links NCBI RGD Ensembl Show fit	brain-derived neurotrophic factor
chr1_-_185143272 Show fit	0.01	ENSRNOT00000027752	Nucb2 Links NCBI RGD Ensembl Show fit	nucleobindin 2
chr1_+_199287895 Show fit	0.01	ENSRNOT00000026224	Stx4 Links NCBI RGD Ensembl Show fit	syntaxin 4
chr3_-_165700489 Show fit	0.01	ENSRNOT00000017008	Zfp93 Links NCBI RGD Ensembl Show fit	zinc finger protein 93
chr2_+_18392142 Show fit	0.01	ENSRNOT00000043196	Hapln1 Links NCBI RGD Ensembl Show fit	hyaluronan and proteoglycan link protein 1
chr13_-_83425641 Show fit	0.01	ENSRNOT00000063870	Tbx19 Links NCBI RGD Ensembl Show fit	T-box 19
chr1_-_247821728 Show fit	0.01	ENSRNOT00000021958	Ermp1 Links NCBI RGD Ensembl Show fit	endoplasmic reticulum metallopeptidase 1
chr15_-_49467174 Show fit	0.01	ENSRNOT00000019209	Adam7 Links NCBI RGD Ensembl Show fit	ADAM metallopeptidase domain 7
chr2_+_154580558 Show fit	0.01	ENSRNOT00000076976	Gmps Links NCBI RGD Ensembl Show fit	guanine monophosphate synthase
chr8_-_12355091 Show fit	0.01	ENSRNOT00000009318	Cep57 Links NCBI RGD Ensembl Show fit	centrosomal protein 57
chr18_+_17091310 Show fit	0.01	ENSRNOT00000093285	Fhod3 Links NCBI RGD Ensembl Show fit	formin homology 2 domain containing 3
chr1_+_84293102 Show fit	0.00	ENSRNOT00000028468	Sertad1 Links NCBI RGD Ensembl Show fit	SERTA domain containing 1
chr20_+_4369394 Show fit	0.00	ENSRNOT00000088734 ENSRNOT00000091491	Agpat1 Links NCBI RGD Ensembl Show fit	1-acylglycerol-3-phosphate O-acyltransferase 1
chr3_+_117421604 Show fit	0.00	ENSRNOT00000008860 ENSRNOT00000008857	Slc12a1 Links NCBI RGD Ensembl Show fit	solute carrier family 12 member 1
chr14_-_21299068 Show fit	0.00	ENSRNOT00000065778	Amtn Links NCBI RGD Ensembl Show fit	amelotin
chr5_-_159962218 Show fit	0.00	ENSRNOT00000050729	Clcnkb Links NCBI RGD Ensembl Show fit	chloride voltage-gated channel Kb
chr1_-_164101578 Show fit	0.00	ENSRNOT00000022176	Uvrag Links NCBI RGD Ensembl Show fit	UV radiation resistance associated
chr1_+_84328114 Show fit	0.00	ENSRNOT00000028266	Hipk4 Links NCBI RGD Ensembl Show fit	homeodomain interacting protein kinase 4
chr3_-_44086006 Show fit	0.00	ENSRNOT00000034449 ENSRNOT00000082604	Ermn Links NCBI RGD Ensembl Show fit	ermin
chr11_-_782954 Show fit	0.00	ENSRNOT00000040065	Epha3 Links NCBI RGD Ensembl Show fit	Eph receptor A3
chr1_-_64090017 Show fit	0.00	ENSRNOT00000086622 ENSRNOT00000091654	Rps9 Links NCBI RGD Ensembl Show fit	ribosomal protein S9
chr3_-_125470413 Show fit	0.00	ENSRNOT00000028893	Trmt6 Links NCBI RGD Ensembl Show fit	tRNA methyltransferase 6
chr7_-_117440342 Show fit	0.00	ENSRNOT00000018528	Tssk5 Links NCBI RGD Ensembl Show fit	testis-specific serine kinase 5
chr20_-_5533600 Show fit	0.00	ENSRNOT00000072319	Cuta Links NCBI RGD Ensembl Show fit	cutA divalent cation tolerance homolog
chr14_+_43512901 Show fit	0.00	ENSRNOT00000050664	Apbb2 Links NCBI RGD Ensembl Show fit	amyloid beta precursor protein binding family B member 2
chr3_-_171342646 Show fit	0.00	ENSRNOT00000071853	Pmepa1 Links NCBI RGD Ensembl Show fit	prostate transmembrane protein, androgen induced 1
chr20_-_5533448 Show fit	0.00	ENSRNOT00000000568	Cuta Links NCBI RGD Ensembl Show fit	cutA divalent cation tolerance homolog
chr6_-_92121351 Show fit	0.00	ENSRNOT00000006374	Cdkl1 Links NCBI RGD Ensembl Show fit	cyclin dependent kinase like 1

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0006713	glucocorticoid catabolic process(GO:0006713)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0001674	female germ cell nucleus(GO:0001674)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0001515	opioid peptide activity(GO:0001515)
0.0	0.0	GO:0003845	11-beta-hydroxysteroid dehydrogenase [NAD(P)] activity(GO:0003845)