GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Bhlhe40 Links NCBI RGD Ensembl	ENSRNOG00000007152	basic helix-loop-helix family, member e40

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Bhlhe40	rn6_v1_chr4_+_140703619_140703619	-0.48	4.1e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr8_-_104995725 Show fit	0.07	ENSRNOT00000037120	Slc25a36 Links NCBI RGD Ensembl Show fit	solute carrier family 25 member 36
chr10_+_40543288 Show fit	0.06	ENSRNOT00000016755	Slc36a1 Links NCBI RGD Ensembl Show fit	solute carrier family 36 member 1
chr1_-_219450451 Show fit	0.06	ENSRNOT00000025317	Rad9a Links NCBI RGD Ensembl Show fit	RAD9 checkpoint clamp component A
chr6_-_102472926 Show fit	0.06	ENSRNOT00000079351	Zfyve26 Links NCBI RGD Ensembl Show fit	zinc finger FYVE-type containing 26
chrX_-_84821775 Show fit	0.06	ENSRNOT00000000174	Chm Links NCBI RGD Ensembl Show fit	CHM, Rab escort protein 1
chr10_+_94988362 Show fit	0.06	ENSRNOT00000066525	Cep95 Links NCBI RGD Ensembl Show fit	centrosomal protein 95
chr1_-_92119951 Show fit	0.05	ENSRNOT00000018153 ENSRNOT00000092121	Zfp507 Links NCBI RGD Ensembl Show fit	zinc finger protein 507
chr6_+_109617355 Show fit	0.05	ENSRNOT00000011599	Flvcr2 Links NCBI RGD Ensembl Show fit	feline leukemia virus subgroup C cellular receptor family, member 2
chr14_-_44767120 Show fit	0.05	ENSRNOT00000003991	Wdr19 Links NCBI RGD Ensembl Show fit	WD repeat domain 19
chr9_+_94425252 Show fit	0.05	ENSRNOT00000064965 ENSRNOT00000076099	Gigyf2 Links NCBI RGD Ensembl Show fit	GRB10 interacting GYF protein 2
chr18_+_15298978 Show fit	0.05	ENSRNOT00000021263	Trappc8 Links NCBI RGD Ensembl Show fit	trafficking protein particle complex 8
chr10_-_62287189 Show fit	0.05	ENSRNOT00000004365	Wdr81 Links NCBI RGD Ensembl Show fit	WD repeat domain 81
chr5_-_160352927 Show fit	0.04	ENSRNOT00000017247	Dnajc16 Links NCBI RGD Ensembl Show fit	DnaJ heat shock protein family (Hsp40) member C16
chr1_-_144601327 Show fit	0.04	ENSRNOT00000029244 ENSRNOT00000078144	Saxo2 Links NCBI RGD Ensembl Show fit	stabilizer of axonemal microtubules 2
chr7_+_53878610 Show fit	0.04	ENSRNOT00000091910	Osbpl8 Links NCBI RGD Ensembl Show fit	oxysterol binding protein-like 8
chr10_-_6870011 Show fit	0.04	ENSRNOT00000003439	RGD1309748 Links NCBI RGD Ensembl Show fit	similar to CG4768-PA
chr3_+_163570532 Show fit	0.04	ENSRNOT00000010054	Arfgef2 Links NCBI RGD Ensembl Show fit	ADP ribosylation factor guanine nucleotide exchange factor 2
chr2_-_210088949 Show fit	0.04	ENSRNOT00000070994	Rbm15 Links NCBI RGD Ensembl Show fit	RNA binding motif protein 15
chr10_+_62191656 Show fit	0.04	ENSRNOT00000029866	Smyd4 Links NCBI RGD Ensembl Show fit	SET and MYND domain containing 4
chr18_+_55797198 Show fit	0.04	ENSRNOT00000026334 ENSRNOT00000026394	Dctn4 Links NCBI RGD Ensembl Show fit	dynactin subunit 4
chr1_+_154377447 Show fit	0.03	ENSRNOT00000084268 ENSRNOT00000092086 ENSRNOT00000091470 ENSRNOT00000025415	Picalm Links NCBI RGD Ensembl Show fit	phosphatidylinositol binding clathrin assembly protein
chr12_+_38459832 Show fit	0.02	ENSRNOT00000090343	Vps33a Links NCBI RGD Ensembl Show fit	VPS33A CORVET/HOPS core subunit
chr10_-_94988461 Show fit	0.02	ENSRNOT00000048490	Ddx5 Links NCBI RGD Ensembl Show fit	DEAD-box helicase 5
chr5_+_138470069 Show fit	0.02	ENSRNOT00000076343 ENSRNOT00000064073	Zmynd12 Links NCBI RGD Ensembl Show fit	zinc finger, MYND-type containing 12
chr2_-_196270826 Show fit	0.02	ENSRNOT00000028609	Pip5k1a Links NCBI RGD Ensembl Show fit	phosphatidylinositol-4-phosphate 5-kinase, type 1, alpha
chrX_+_74200972 Show fit	0.02	ENSRNOT00000076956	Chic1 Links NCBI RGD Ensembl Show fit	cysteine-rich hydrophobic domain 1
chr19_+_14392423 Show fit	0.02	ENSRNOT00000018880	Tom1 Links NCBI RGD Ensembl Show fit	target of myb1 membrane trafficking protein
chr19_+_26151900 Show fit	0.02	ENSRNOT00000005571	Tnpo2 Links NCBI RGD Ensembl Show fit	transportin 2
chrX_-_105417323 Show fit	0.02	ENSRNOT00000015494	Gla Links NCBI RGD Ensembl Show fit	galactosidase, alpha
chr1_-_222495382 Show fit	0.02	ENSRNOT00000028759	Naa40 Links NCBI RGD Ensembl Show fit	N(alpha)-acetyltransferase 40, NatD catalytic subunit
chr6_-_122239614 Show fit	0.02	ENSRNOT00000005015	Galc Links NCBI RGD Ensembl Show fit	galactosylceramidase
chr1_+_144601410 Show fit	0.02	ENSRNOT00000047408	Efl1 Links NCBI RGD Ensembl Show fit	elongation factor like GTPase 1
chr4_+_148139528 Show fit	0.02	ENSRNOT00000092594 ENSRNOT00000015620 ENSRNOT00000092613	Washc2c Links NCBI RGD Ensembl Show fit	WASH complex subunit 2C
chr10_-_62191512 Show fit	0.01	ENSRNOT00000090262	Rpa1 Links NCBI RGD Ensembl Show fit	replication protein A1
chr10_-_10725655 Show fit	0.01	ENSRNOT00000061236	Ubn1 Links NCBI RGD Ensembl Show fit	ubinuclein 1
chr13_-_70174565 Show fit	0.01	ENSRNOT00000067135	Rgl1 Links NCBI RGD Ensembl Show fit	ral guanine nucleotide dissociation stimulator,-like 1
chr10_+_10725819 Show fit	0.01	ENSRNOT00000004159	Glyr1 Links NCBI RGD Ensembl Show fit	glyoxylate reductase 1 homolog
chr1_-_164101578 Show fit	0.01	ENSRNOT00000022176	Uvrag Links NCBI RGD Ensembl Show fit	UV radiation resistance associated
chr13_-_111765944 Show fit	0.01	ENSRNOT00000073041	Syt14 Links NCBI RGD Ensembl Show fit	synaptotagmin 14
chr10_-_37455022 Show fit	0.01	ENSRNOT00000016742	LOC103694902 Links NCBI RGD Ensembl Show fit	ubiquitin-conjugating enzyme E2 B
chr1_+_200167169 Show fit	0.01	ENSRNOT00000027665	Sec23ip Links NCBI RGD Ensembl Show fit	SEC23 interacting protein
chr2_+_198852500 Show fit	0.01	ENSRNOT00000000110	Rnf115 Links NCBI RGD Ensembl Show fit	ring finger protein 115
chr1_-_102849430 Show fit	0.01	ENSRNOT00000086856	Saa4 Links NCBI RGD Ensembl Show fit	serum amyloid A4
chr16_+_8497569 Show fit	0.01	ENSRNOT00000027054	Ogdhl Links NCBI RGD Ensembl Show fit	oxoglutarate dehydrogenase-like
chr20_-_32115310 Show fit	0.01	ENSRNOT00000067883 ENSRNOT00000081916	Vps26a Links NCBI RGD Ensembl Show fit	VPS26 retromer complex component A
chr2_-_198852161 Show fit	0.01	ENSRNOT00000028815	Polr3c Links NCBI RGD Ensembl Show fit	RNA polymerase III subunit C
chr1_-_72329856 Show fit	0.01	ENSRNOT00000021391	U2af2 Links NCBI RGD Ensembl Show fit	U2 small nuclear RNA auxiliary factor 2
chr8_+_81863619 Show fit	0.01	ENSRNOT00000080608	Fam214a Links NCBI RGD Ensembl Show fit	family with sequence similarity 214, member A
chr11_+_60613882 Show fit	0.01	ENSRNOT00000002853	Slc35a5 Links NCBI RGD Ensembl Show fit	solute carrier family 35, member A5
chr5_-_164844586 Show fit	0.00	ENSRNOT00000011287	Clcn6 Links NCBI RGD Ensembl Show fit	chloride voltage-gated channel 6
chr6_-_12997817 Show fit	0.00	ENSRNOT00000022802	Fshr Links NCBI RGD Ensembl Show fit	follicle stimulating hormone receptor
chr19_-_43215077 Show fit	0.00	ENSRNOT00000082151	Aars Links NCBI RGD Ensembl Show fit	alanyl-tRNA synthetase
chr3_+_138504214 Show fit	0.00	ENSRNOT00000091529	Kat14 Links NCBI RGD Ensembl Show fit	lysine acetyltransferase 14

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0060830	ciliary receptor clustering involved in smoothened signaling pathway(GO:0060830) myotome development(GO:0061055)
0.0	0.0	GO:0030242	pexophagy(GO:0030242)
0.0	0.0	GO:0090204	protein localization to nuclear pore(GO:0090204)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0005968	Rab-protein geranylgeranyltransferase complex(GO:0005968)
0.0	0.1	GO:0030896	checkpoint clamp complex(GO:0030896)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0005302	L-tyrosine transmembrane transporter activity(GO:0005302)