GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Brca1 Links NCBI RGD Ensembl	ENSRNOG00000020701	BRCA1, DNA repair associated

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Brca1	rn6_v1_chr10_-_89454681_89454681	0.74	1.5e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr1_-_69835185 Show fit	0.04	ENSRNOT00000020757	LOC108349745 Links NCBI RGD Ensembl Show fit	spindle assembly abnormal protein 6 homolog
chr12_-_36398206 Show fit	0.04	ENSRNOT00000090944 ENSRNOT00000058492	Tmem132b Links NCBI RGD Ensembl Show fit	transmembrane protein 132B
chr18_-_49937522 Show fit	0.03	ENSRNOT00000033254	Zfp608 Links NCBI RGD Ensembl Show fit	zinc finger protein 608
chr1_+_45923222 Show fit	0.03	ENSRNOT00000092976 ENSRNOT00000084454 ENSRNOT00000022939	Arid1b Links NCBI RGD Ensembl Show fit	AT-rich interaction domain 1B
chr6_-_108796124 Show fit	0.03	ENSRNOT00000086545	Arel1 Links NCBI RGD Ensembl Show fit	apoptosis resistant E3 ubiquitin protein ligase 1
chr10_+_43768708 Show fit	0.02	ENSRNOT00000086218	Sh3bp5l Links NCBI RGD Ensembl Show fit	SH3 binding domain protein 5 like
chr10_-_51669297 Show fit	0.02	ENSRNOT00000071595	Arhgap44 Links NCBI RGD Ensembl Show fit	Rho GTPase activating protein 44
chr19_-_41433346 Show fit	0.02	ENSRNOT00000022952	Cmtr2 Links NCBI RGD Ensembl Show fit	cap methyltransferase 2
chr6_+_28515025 Show fit	0.02	ENSRNOT00000088033 ENSRNOT00000005317 ENSRNOT00000081141	Dnajc27 Links NCBI RGD Ensembl Show fit	DnaJ heat shock protein family (Hsp40) member C27
chr20_-_47306318 Show fit	0.02	ENSRNOT00000075151	Nr2e1 Links NCBI RGD Ensembl Show fit	nuclear receptor subfamily 2, group E, member 1
chr18_+_30895831 Show fit	0.02	ENSRNOT00000026985	Pcdhga10 Links NCBI RGD Ensembl Show fit	protocadherin gamma subfamily A, 10
chr7_-_14402010 Show fit	0.02	ENSRNOT00000008303	Wiz Links NCBI RGD Ensembl Show fit	widely-interspaced zinc finger motifs
chr18_+_53088994 Show fit	0.02	ENSRNOT00000091921	AC104053.2 Links NCBI RGD Ensembl Show fit
chr20_-_4508197 Show fit	0.02	ENSRNOT00000086027 ENSRNOT00000000514	C4a Links NCBI RGD Ensembl Show fit	complement component 4A (Rodgers blood group)
chr1_-_127292090 Show fit	0.02	ENSRNOT00000016959	Lrrk1 Links NCBI RGD Ensembl Show fit	leucine-rich repeat kinase 1
chr20_-_5123073 Show fit	0.02	ENSRNOT00000001126	Apom Links NCBI RGD Ensembl Show fit	apolipoprotein M
chr8_-_44327551 Show fit	0.02	ENSRNOT00000083939	Gramd1b Links NCBI RGD Ensembl Show fit	GRAM domain containing 1B
chr20_+_27129291 Show fit	0.02	ENSRNOT00000031053	AABR07044933.1 Links NCBI RGD Ensembl Show fit
chr3_+_95715193 Show fit	0.01	ENSRNOT00000089525	Pax6 Links NCBI RGD Ensembl Show fit	paired box 6
chr1_-_277355075 Show fit	0.01	ENSRNOT00000036321	Dclre1a Links NCBI RGD Ensembl Show fit	DNA cross-link repair 1A
chr7_+_71157664 Show fit	0.01	ENSRNOT00000005919	Sdr9c7 Links NCBI RGD Ensembl Show fit	short chain dehydrogenase/reductase family 9C, member 7
chr13_-_53108713 Show fit	0.01	ENSRNOT00000035404	RGD1311892 Links NCBI RGD Ensembl Show fit	similar to hypothetical protein FLJ10901
chr4_+_100209951 Show fit	0.01	ENSRNOT00000015807	LOC691113 Links NCBI RGD Ensembl Show fit	hypothetical protein LOC691113
chr12_+_41543696 Show fit	0.01	ENSRNOT00000079639	Tpcn1 Links NCBI RGD Ensembl Show fit	two pore segment channel 1
chr16_-_81945127 Show fit	0.01	ENSRNOT00000023352	Mcf2l Links NCBI RGD Ensembl Show fit	MCF.2 cell line derived transforming sequence-like
chr10_+_52334240 Show fit	0.01	ENSRNOT00000005518	Zfp18 Links NCBI RGD Ensembl Show fit	zinc finger protein 18
chr13_-_70299733 Show fit	0.01	ENSRNOT00000044235	Smg7 Links NCBI RGD Ensembl Show fit	SMG7 nonsense mediated mRNA decay factor
chrX_+_45637415 Show fit	0.01	ENSRNOT00000050544	RGD1563378 Links NCBI RGD Ensembl Show fit	similar to ferritin heavy polypeptide-like 17
chr3_+_100787956 Show fit	0.01	ENSRNOT00000073636	Bdnf Links NCBI RGD Ensembl Show fit	brain-derived neurotrophic factor
chr1_-_165967069 Show fit	0.01	ENSRNOT00000089359	Arhgef17 Links NCBI RGD Ensembl Show fit	Rho guanine nucleotide exchange factor (GEF) 17
chr4_-_16654811 Show fit	0.01	ENSRNOT00000008637	Pclo Links NCBI RGD Ensembl Show fit	piccolo (presynaptic cytomatrix protein)
chrX_-_62690806 Show fit	0.01	ENSRNOT00000018147	Pola1 Links NCBI RGD Ensembl Show fit	DNA polymerase alpha 1, catalytic subunit
chr3_-_29993715 Show fit	0.01	ENSRNOT00000085801	Zeb2 Links NCBI RGD Ensembl Show fit	zinc finger E-box binding homeobox 2
chr10_+_20320878 Show fit	0.01	ENSRNOT00000009714	Slit3 Links NCBI RGD Ensembl Show fit	slit guidance ligand 3
chr7_+_18409147 Show fit	0.01	ENSRNOT00000086336 ENSRNOT00000011849	Adamts10 Links NCBI RGD Ensembl Show fit	ADAM metallopeptidase with thrombospondin type 1 motif, 10
chr13_+_90532326 Show fit	0.01	ENSRNOT00000008944	Dcaf8 Links NCBI RGD Ensembl Show fit	DDB1 and CUL4 associated factor 8
chr17_+_36690249 Show fit	0.01	ENSRNOT00000089476 ENSRNOT00000082140	LOC688583 Links NCBI RGD Ensembl Show fit	similar to High mobility group protein 4 (HMG-4) (High mobility group protein 2a) (HMG-2a)
chr3_+_151126591 Show fit	0.01	ENSRNOT00000025859	Myh7b Links NCBI RGD Ensembl Show fit	myosin heavy chain 7B
chr1_+_264309214 Show fit	0.01	ENSRNOT00000019070	Hif1an Links NCBI RGD Ensembl Show fit	hypoxia-inducible factor 1, alpha subunit inhibitor
chr2_+_116032455 Show fit	0.01	ENSRNOT00000066495	Phc3 Links NCBI RGD Ensembl Show fit	polyhomeotic homolog 3
chr16_+_6542216 Show fit	0.01	ENSRNOT00000021475	Dcp1a Links NCBI RGD Ensembl Show fit	decapping mRNA 1A
chr1_-_204275803 Show fit	0.01	ENSRNOT00000066711	Chst15 Links NCBI RGD Ensembl Show fit	carbohydrate sulfotransferase 15
chr5_+_139385429 Show fit	0.01	ENSRNOT00000078622	Scmh1 Links NCBI RGD Ensembl Show fit	sex comb on midleg homolog 1 (Drosophila)
chr6_-_51297712 Show fit	0.01	ENSRNOT00000082985	Prkar2b Links NCBI RGD Ensembl Show fit	protein kinase cAMP-dependent type 2 regulatory subunit beta
chr13_+_98857177 Show fit	0.01	ENSRNOT00000004232	Parp1 Links NCBI RGD Ensembl Show fit	poly (ADP-ribose) polymerase 1
chr12_+_30198822 Show fit	0.01	ENSRNOT00000041645	Gusb Links NCBI RGD Ensembl Show fit	glucuronidase, beta
chr6_-_146470456 Show fit	0.01	ENSRNOT00000018479	RGD1560883 Links NCBI RGD Ensembl Show fit	similar to KIAA0825 protein
chr16_+_54386513 Show fit	0.01	ENSRNOT00000080696	AABR07025896.1 Links NCBI RGD Ensembl Show fit
chr13_-_91872954 Show fit	0.01	ENSRNOT00000004613 ENSRNOT00000079263	Cadm3 Links NCBI RGD Ensembl Show fit	cell adhesion molecule 3
chr11_-_87485833 Show fit	0.01	ENSRNOT00000079948	AABR07034751.1 Links NCBI RGD Ensembl Show fit
chr10_-_15166457 Show fit	0.01	ENSRNOT00000026676	Metrn Links NCBI RGD Ensembl Show fit	meteorin, glial cell differentiation regulator
chr8_-_32328819 Show fit	0.01	ENSRNOT00000074457 ENSRNOT00000070818	Aplp2 Links NCBI RGD Ensembl Show fit	amyloid beta precursor like protein 2
chr10_+_95770154 Show fit	0.01	ENSRNOT00000030300	Helz Links NCBI RGD Ensembl Show fit	helicase with zinc finger
chr13_-_89242443 Show fit	0.01	ENSRNOT00000029202	Atf6 Links NCBI RGD Ensembl Show fit	activating transcription factor 6
chr1_-_78968329 Show fit	0.01	ENSRNOT00000023078	Ppp5c Links NCBI RGD Ensembl Show fit	protein phosphatase 5, catalytic subunit
chr15_-_28721127 Show fit	0.01	ENSRNOT00000017720	Mettl3 Links NCBI RGD Ensembl Show fit	methyltransferase-like 3
chr5_-_57168610 Show fit	0.01	ENSRNOT00000090499	B4galt1 Links NCBI RGD Ensembl Show fit	beta-1,4-galactosyltransferase 1
chr20_+_42966140 Show fit	0.01	ENSRNOT00000000707	Marcks Links NCBI RGD Ensembl Show fit	myristoylated alanine rich protein kinase C substrate
chr12_+_39078119 Show fit	0.01	ENSRNOT00000044071	Kdm2b Links NCBI RGD Ensembl Show fit	lysine demethylase 2B
chr3_-_48535909 Show fit	0.01	ENSRNOT00000008148	Fap Links NCBI RGD Ensembl Show fit	fibroblast activation protein, alpha
chr9_+_88607508 Show fit	0.01	ENSRNOT00000021309	Agfg1 Links NCBI RGD Ensembl Show fit	ArfGAP with FG repeats 1
chr3_-_37445907 Show fit	0.01	ENSRNOT00000006172	Rbm43 Links NCBI RGD Ensembl Show fit	RNA binding motif protein 43
chr10_-_92602082 Show fit	0.01	ENSRNOT00000007963	Cdc27 Links NCBI RGD Ensembl Show fit	cell division cycle 27
chr8_+_26432514 Show fit	0.01	ENSRNOT00000081574	Sept7 Links NCBI RGD Ensembl Show fit	septin 7
chr14_-_19159923 Show fit	0.01	ENSRNOT00000003879	Afp Links NCBI RGD Ensembl Show fit	alpha-fetoprotein
chr12_-_48048540 Show fit	0.01	ENSRNOT00000071335 ENSRNOT00000078807	Myo1h Links NCBI RGD Ensembl Show fit	myosin 1H
chr1_-_32570589 Show fit	0.01	ENSRNOT00000072992	LOC100910528 Links NCBI RGD Ensembl Show fit	39S ribosomal protein L36, mitochondrial-like
chr3_-_64024205 Show fit	0.01	ENSRNOT00000037015	Ccdc141 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 141
chr9_-_14668297 Show fit	0.01	ENSRNOT00000042404	Treml2 Links NCBI RGD Ensembl Show fit	triggering receptor expressed on myeloid cells-like 2
chr2_-_140334912 Show fit	0.01	ENSRNOT00000015067	Elf2 Links NCBI RGD Ensembl Show fit	E74-like factor 2
chrX_+_15988604 Show fit	0.01	ENSRNOT00000003800	Usp27x Links NCBI RGD Ensembl Show fit	ubiquitin specific peptidase 27, X-linked
chr9_-_10734073 Show fit	0.01	ENSRNOT00000071199	Kdm4b Links NCBI RGD Ensembl Show fit	lysine demethylase 4B
chr13_-_83680207 Show fit	0.00	ENSRNOT00000004199	Dcaf6 Links NCBI RGD Ensembl Show fit	DDB1 and CUL4 associated factor 6
chr8_+_90343154 Show fit	0.00	ENSRNOT00000068482	Irak1bp1 Links NCBI RGD Ensembl Show fit	interleukin-1 receptor-associated kinase 1 binding protein 1
chr5_+_133620706 Show fit	0.00	ENSRNOT00000053202	Gm12830 Links NCBI RGD Ensembl Show fit	predicted gene 12830
chr1_-_252922486 Show fit	0.00	ENSRNOT00000076802	Ifit1bl Links NCBI RGD Ensembl Show fit	interferon-induced protein with tetratricopeptide repeats 1B-like
chr14_-_92577936 Show fit	0.00	ENSRNOT00000086154	Cobl Links NCBI RGD Ensembl Show fit	cordon-bleu WH2 repeat protein
chr6_+_86823684 Show fit	0.00	ENSRNOT00000086081 ENSRNOT00000006574	Fancm Links NCBI RGD Ensembl Show fit	Fanconi anemia, complementation group M
chr1_+_265904566 Show fit	0.00	ENSRNOT00000086041 ENSRNOT00000036156	Gbf1 Links NCBI RGD Ensembl Show fit	golgi brefeldin A resistant guanine nucleotide exchange factor 1
chr14_+_45982244 Show fit	0.00	ENSRNOT00000076881 ENSRNOT00000002984	Rell1 Links NCBI RGD Ensembl Show fit	RELT-like 1
chr10_-_66858598 Show fit	0.00	ENSRNOT00000018898	Evi2b Links NCBI RGD Ensembl Show fit	ecotropic viral integration site 2B
chr14_-_86190659 Show fit	0.00	ENSRNOT00000086474	Gck Links NCBI RGD Ensembl Show fit	glucokinase
chr12_-_19328637 Show fit	0.00	ENSRNOT00000001829	Taf6 Links NCBI RGD Ensembl Show fit	TATA-box binding protein associated factor 6
chr7_-_123259636 Show fit	0.00	ENSRNOT00000007424	Desi1 Links NCBI RGD Ensembl Show fit	desumoylating isopeptidase 1
chr10_-_89084885 Show fit	0.00	ENSRNOT00000027452	Plekhh3 Links NCBI RGD Ensembl Show fit	pleckstrin homology, MyTH4 and FERM domain containing H3
chr1_+_42170281 Show fit	0.00	ENSRNOT00000092879	Vip Links NCBI RGD Ensembl Show fit	vasoactive intestinal peptide
chr2_+_224851383 Show fit	0.00	ENSRNOT00000015354	Alg14 Links NCBI RGD Ensembl Show fit	ALG14, UDP-N-acetylglucosaminyltransferase subunit
chr1_-_143392532 Show fit	0.00	ENSRNOT00000026089	Fsd2 Links NCBI RGD Ensembl Show fit	fibronectin type III and SPRY domain containing 2
chr1_+_78820262 Show fit	0.00	ENSRNOT00000022441	Gng8 Links NCBI RGD Ensembl Show fit	G protein subunit gamma 8
chr5_+_164950917 Show fit	0.00	ENSRNOT00000083678	Mad2l2 Links NCBI RGD Ensembl Show fit	MAD2 mitotic arrest deficient-like 2 (yeast)
chr9_-_15393131 Show fit	0.00	ENSRNOT00000018523 ENSRNOT00000088314	Med20 Links NCBI RGD Ensembl Show fit	mediator complex subunit 20
chr2_-_243407608 Show fit	0.00	ENSRNOT00000014631	Mttp Links NCBI RGD Ensembl Show fit	microsomal triglyceride transfer protein
chr2_-_29121104 Show fit	0.00	ENSRNOT00000020543	Tnpo1 Links NCBI RGD Ensembl Show fit	transportin 1
chr8_+_23771920 Show fit	0.00	ENSRNOT00000020481	Bbs9 Links NCBI RGD Ensembl Show fit	Bardet-Biedl syndrome 9
chr17_+_47397558 Show fit	0.00	ENSRNOT00000085923	Epdr1 Links NCBI RGD Ensembl Show fit	ependymin related 1
chr9_-_119190698 Show fit	0.00	ENSRNOT00000021534	Tgif1 Links NCBI RGD Ensembl Show fit	TGFB-induced factor homeobox 1
chr8_+_82038967 Show fit	0.00	ENSRNOT00000079535	Myo5a Links NCBI RGD Ensembl Show fit	myosin VA
chr1_-_142759882 Show fit	0.00	ENSRNOT00000015218	Sec11a Links NCBI RGD Ensembl Show fit	SEC11 homolog A, signal peptidase complex subunit
chr14_-_108412823 Show fit	0.00	ENSRNOT00000081405	Pex13 Links NCBI RGD Ensembl Show fit	peroxisomal biogenesis factor 13
chr7_-_124256077 Show fit	0.00	ENSRNOT00000067913 ENSRNOT00000013428	Pacsin2 Links NCBI RGD Ensembl Show fit	protein kinase C and casein kinase substrate in neurons 2
chr2_-_189602143 Show fit	0.00	ENSRNOT00000032062	Creb3l4 Links NCBI RGD Ensembl Show fit	cAMP responsive element binding protein 3-like 4
chr1_-_217720414 Show fit	0.00	ENSRNOT00000078810	Ppfia1 Links NCBI RGD Ensembl Show fit	PTPRF interacting protein alpha 1
chr6_+_44225233 Show fit	0.00	ENSRNOT00000066593	Kidins220 Links NCBI RGD Ensembl Show fit	kinase D-interacting substrate 220
chr3_-_51643140 Show fit	0.00	ENSRNOT00000006646	Scn3a Links NCBI RGD Ensembl Show fit	sodium voltage-gated channel alpha subunit 3
chr14_+_44413636 Show fit	0.00	ENSRNOT00000003552	Smim14 Links NCBI RGD Ensembl Show fit	small integral membrane protein 14
chr4_-_178168690 Show fit	0.00	ENSRNOT00000020729	Sox5 Links NCBI RGD Ensembl Show fit	SRY box 5
chr7_+_122160171 Show fit	0.00	ENSRNOT00000074499	LOC100362980 Links NCBI RGD Ensembl Show fit	CG3918-like
chr13_-_102790639 Show fit	0.00	ENSRNOT00000003177	RGD1310587 Links NCBI RGD Ensembl Show fit	similar to hypothetical protein FLJ14146
chr16_-_6404578 Show fit	0.00	ENSRNOT00000051371	Cacna1d Links NCBI RGD Ensembl Show fit	calcium voltage-gated channel subunit alpha1 D
chr1_-_91296656 Show fit	0.00	ENSRNOT00000028703	Cebpg Links NCBI RGD Ensembl Show fit	CCAAT/enhancer binding protein gamma

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