GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Creb1 Links NCBI RGD Ensembl	ENSRNOG00000013412	cAMP responsive element binding protein 1

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Creb1	rn6_v1_chr9_+_71230108_71230108	0.57	3.2e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr1_-_219412816 Show fit	0.44	ENSRNOT00000083204 ENSRNOT00000029580	Rps6kb2 Links NCBI RGD Ensembl Show fit	ribosomal protein S6 kinase B2
chr6_+_144156175 Show fit	0.40	ENSRNOT00000006582	Esyt2 Links NCBI RGD Ensembl Show fit	extended synaptotagmin 2
chr10_-_104482838 Show fit	0.35	ENSRNOT00000007246	Recql5 Links NCBI RGD Ensembl Show fit	RecQ like helicase 5
chr17_+_18358712 Show fit	0.30	ENSRNOT00000001979	Nup153 Links NCBI RGD Ensembl Show fit	nucleoporin 153
chr8_-_49271834 Show fit	0.27	ENSRNOT00000085022	Ube4a Links NCBI RGD Ensembl Show fit	ubiquitination factor E4A
chr1_-_198450688 Show fit	0.26	ENSRNOT00000027392	Pagr1 Links NCBI RGD Ensembl Show fit	Paxip1-associated glutamate-rich protein 1
chr10_-_110555629 Show fit	0.25	ENSRNOT00000054918 ENSRNOT00000088474	Wdr45b Links NCBI RGD Ensembl Show fit	WD repeat domain 45B
chr20_+_6205903 Show fit	0.25	ENSRNOT00000092333 ENSRNOT00000092655	Kctd20 Links NCBI RGD Ensembl Show fit	potassium channel tetramerization domain containing 20
chr20_+_4967194 Show fit	0.23	ENSRNOT00000070846	Lsm2 Links NCBI RGD Ensembl Show fit	LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated
chr11_+_71796282 Show fit	0.21	ENSRNOT00000087489	Fbxo45 Links NCBI RGD Ensembl Show fit	F-box protein 45
chr1_+_221710670 Show fit	0.21	ENSRNOT00000064798	Map4k2 Links NCBI RGD Ensembl Show fit	mitogen activated protein kinase kinase kinase kinase 2
chr7_+_11033317 Show fit	0.20	ENSRNOT00000007498	Gna11 Links NCBI RGD Ensembl Show fit	guanine nucleotide binding protein, alpha 11
chr1_-_175657485 Show fit	0.20	ENSRNOT00000024561	rnf141 Links NCBI RGD Ensembl Show fit	ring finger protein 141
chr15_+_34520142 Show fit	0.20	ENSRNOT00000074659	Nynrin Links NCBI RGD Ensembl Show fit	NYN domain and retroviral integrase containing
chr18_+_1142782 Show fit	0.19	ENSRNOT00000046718	Thoc1 Links NCBI RGD Ensembl Show fit	THO complex 1
chr13_+_99136871 Show fit	0.19	ENSRNOT00000078263 ENSRNOT00000004350	Sde2 Links NCBI RGD Ensembl Show fit	SDE2 telomere maintenance homolog
chr14_+_1469748 Show fit	0.18	ENSRNOT00000071648	Ppp2r3b Links NCBI RGD Ensembl Show fit	protein phosphatase 2, regulatory subunit B'', beta
chr3_-_176791960 Show fit	0.17	ENSRNOT00000018237	Gmeb2 Links NCBI RGD Ensembl Show fit	glucocorticoid modulatory element binding protein 2
chr6_-_122545899 Show fit	0.17	ENSRNOT00000005175	Kcnk10 Links NCBI RGD Ensembl Show fit	potassium two pore domain channel subfamily K member 10
chr6_+_137824213 Show fit	0.17	ENSRNOT00000056880	Pacs2 Links NCBI RGD Ensembl Show fit	phosphofurin acidic cluster sorting protein 2
chr13_-_109629482 Show fit	0.16	ENSRNOT00000072452	Flvcr1 Links NCBI RGD Ensembl Show fit	feline leukemia virus subgroup C cellular receptor 1
chr7_+_144647587 Show fit	0.16	ENSRNOT00000022398	Hoxc4 Links NCBI RGD Ensembl Show fit	homeo box C4
chr1_-_182140570 Show fit	0.16	ENSRNOT00000060098	Ythdc2 Links NCBI RGD Ensembl Show fit	YTH domain containing 2
chr11_-_82664554 Show fit	0.15	ENSRNOT00000002425 ENSRNOT00000087105	Senp2 Links NCBI RGD Ensembl Show fit	Sumo1/sentrin/SMT3 specific peptidase 2
chr8_+_69127708 Show fit	0.15	ENSRNOT00000013490	Snapc5 Links NCBI RGD Ensembl Show fit	small nuclear RNA activating complex, polypeptide 5
chr18_-_63357194 Show fit	0.15	ENSRNOT00000089408 ENSRNOT00000066103	Spire1 Links NCBI RGD Ensembl Show fit	spire-type actin nucleation factor 1
chr11_+_61748883 Show fit	0.15	ENSRNOT00000093552	Qtrt2 Links NCBI RGD Ensembl Show fit	queuine tRNA-ribosyltransferase accessory subunit 2
chr6_-_122897997 Show fit	0.15	ENSRNOT00000057601	Eml5 Links NCBI RGD Ensembl Show fit	echinoderm microtubule associated protein like 5
chr1_-_190370499 Show fit	0.15	ENSRNOT00000084389	AABR07005618.1 Links NCBI RGD Ensembl Show fit
chr2_-_28370261 Show fit	0.15	ENSRNOT00000022259	Utp15 Links NCBI RGD Ensembl Show fit	UTP15, small subunit processome component
chr9_+_16647598 Show fit	0.15	ENSRNOT00000087413	Klc4 Links NCBI RGD Ensembl Show fit	kinesin light chain 4
chr20_-_7654428 Show fit	0.15	ENSRNOT00000045044	Tcp11 Links NCBI RGD Ensembl Show fit	t-complex 11
chr2_+_205553163 Show fit	0.14	ENSRNOT00000039572	Nras Links NCBI RGD Ensembl Show fit	neuroblastoma RAS viral oncogene homolog
chr1_+_212230259 Show fit	0.14	ENSRNOT00000034426	Kndc1 Links NCBI RGD Ensembl Show fit	kinase non-catalytic C-lobe domain containing 1
chr1_+_81395841 Show fit	0.14	ENSRNOT00000072750	Irgq Links NCBI RGD Ensembl Show fit	immunity-related GTPase Q
chr12_-_52072106 Show fit	0.14	ENSRNOT00000088306 ENSRNOT00000068621	Ddx51 Links NCBI RGD Ensembl Show fit	DEAD-box helicase 51
chr1_+_56982821 Show fit	0.13	ENSRNOT00000059845	Ermard Links NCBI RGD Ensembl Show fit	ER membrane-associated RNA degradation
chr8_+_114866768 Show fit	0.13	ENSRNOT00000076731	Wdr82 Links NCBI RGD Ensembl Show fit	WD repeat domain 82
chr9_-_82410904 Show fit	0.13	ENSRNOT00000026081	Glb1l Links NCBI RGD Ensembl Show fit	galactosidase, beta 1-like
chr8_+_132032944 Show fit	0.13	ENSRNOT00000089278	Kif15 Links NCBI RGD Ensembl Show fit	kinesin family member 15
chr20_-_27308069 Show fit	0.13	ENSRNOT00000056047	Slc25a16 Links NCBI RGD Ensembl Show fit	solute carrier family 25 member 16
chr20_+_28027054 Show fit	0.13	ENSRNOT00000071386 ENSRNOT00000001044	Ranbp2 Links NCBI RGD Ensembl Show fit	RAN binding protein 2
chr10_-_55589978 Show fit	0.13	ENSRNOT00000007087	LOC100912917 Links NCBI RGD Ensembl Show fit	phosphoribosylformylglycinamidine synthase-like
chr11_-_86890390 Show fit	0.13	ENSRNOT00000046183	Trmt2a Links NCBI RGD Ensembl Show fit	tRNA methyltransferase 2 homolog A
chr6_+_110624856 Show fit	0.13	ENSRNOT00000014017	Vash1 Links NCBI RGD Ensembl Show fit	vasohibin 1
chr3_+_110835683 Show fit	0.12	ENSRNOT00000072130	LOC100911166 Links NCBI RGD Ensembl Show fit	RNA pseudouridylate synthase domain-containing protein 2-like
chr6_+_96171756 Show fit	0.12	ENSRNOT00000029328	Slc38a6 Links NCBI RGD Ensembl Show fit	solute carrier family 38, member 6
chr1_+_266143818 Show fit	0.12	ENSRNOT00000026987	Sufu Links NCBI RGD Ensembl Show fit	SUFU negative regulator of hedgehog signaling
chr1_-_103128743 Show fit	0.12	ENSRNOT00000075006	Spty2d1 Links NCBI RGD Ensembl Show fit	SPT2 chromatin protein domain containing 1
chr14_-_80355420 Show fit	0.12	ENSRNOT00000049798	Acox3 Links NCBI RGD Ensembl Show fit	acyl-CoA oxidase 3, pristanoyl
chr13_+_44475970 Show fit	0.11	ENSRNOT00000024602 ENSRNOT00000091645	Ccnt2 Links NCBI RGD Ensembl Show fit	cyclin T2
chr12_-_2170504 Show fit	0.11	ENSRNOT00000001309	Xab2 Links NCBI RGD Ensembl Show fit	XPA binding protein 2
chr7_+_130326600 Show fit	0.11	ENSRNOT00000084776 ENSRNOT00000055808	Ncaph2 Links NCBI RGD Ensembl Show fit	non-SMC condensin II complex, subunit H2
chr9_+_50664150 Show fit	0.11	ENSRNOT00000015393	Tpp2 Links NCBI RGD Ensembl Show fit	tripeptidyl peptidase 2
chr1_-_242861767 Show fit	0.11	ENSRNOT00000021185	Cbwd1 Links NCBI RGD Ensembl Show fit	COBW domain containing 1
chr4_+_100209951 Show fit	0.11	ENSRNOT00000015807	LOC691113 Links NCBI RGD Ensembl Show fit	hypothetical protein LOC691113
chr18_-_77535564 Show fit	0.11	ENSRNOT00000041380 ENSRNOT00000090265	Atp9b Links NCBI RGD Ensembl Show fit	ATPase phospholipid transporting 9B (putative)
chr19_-_56731372 Show fit	0.11	ENSRNOT00000024182	Nup133 Links NCBI RGD Ensembl Show fit	nucleoporin 133
chr15_-_24056073 Show fit	0.11	ENSRNOT00000015100	Wdhd1 Links NCBI RGD Ensembl Show fit	WD repeat and HMG-box DNA binding protein 1
chr1_-_89042176 Show fit	0.10	ENSRNOT00000080842	Kmt2b Links NCBI RGD Ensembl Show fit	lysine methyltransferase 2B
chr2_+_56426367 Show fit	0.10	ENSRNOT00000016036	Lifr Links NCBI RGD Ensembl Show fit	leukemia inhibitory factor receptor alpha
chr20_-_7482747 Show fit	0.10	ENSRNOT00000038195	Taf11 Links NCBI RGD Ensembl Show fit	TATA-box binding protein associated factor 11
chr1_-_103014388 Show fit	0.10	ENSRNOT00000045719	Uevld Links NCBI RGD Ensembl Show fit	UEV and lactate/malate dehyrogenase domains
chr2_-_27364906 Show fit	0.10	ENSRNOT00000078639	Polk Links NCBI RGD Ensembl Show fit	DNA polymerase kappa
chr11_+_87522971 Show fit	0.10	ENSRNOT00000043545	Smpd4 Links NCBI RGD Ensembl Show fit	sphingomyelin phosphodiesterase 4
chr10_+_64398339 Show fit	0.10	ENSRNOT00000056278	Mrm3 Links NCBI RGD Ensembl Show fit	mitochondrial rRNA methyltransferase 3
chr5_+_124690214 Show fit	0.10	ENSRNOT00000011237	Plpp3 Links NCBI RGD Ensembl Show fit	phospholipid phosphatase 3
chr19_-_54722563 Show fit	0.10	ENSRNOT00000025784	Slc7a5 Links NCBI RGD Ensembl Show fit	solute carrier family 7 member 5
chr12_+_37444072 Show fit	0.10	ENSRNOT00000077380 ENSRNOT00000092699 ENSRNOT00000001373 ENSRNOT00000092416	Eif2b1 Links NCBI RGD Ensembl Show fit	eukaryotic translation initiation factor 2B subunit 1 alpha
chr10_+_81693770 Show fit	0.09	ENSRNOT00000003777 ENSRNOT00000085681	Spag9 Links NCBI RGD Ensembl Show fit	sperm associated antigen 9
chr1_-_89124132 Show fit	0.09	ENSRNOT00000031044	Haus5 Links NCBI RGD Ensembl Show fit	HAUS augmin-like complex, subunit 5
chr1_+_185356975 Show fit	0.09	ENSRNOT00000086681	Plekha7 Links NCBI RGD Ensembl Show fit	pleckstrin homology domain containing A7
chr3_-_111560556 Show fit	0.09	ENSRNOT00000030532	Ltk Links NCBI RGD Ensembl Show fit	leukocyte receptor tyrosine kinase
chr19_+_55300395 Show fit	0.09	ENSRNOT00000092169	Ctu2 Links NCBI RGD Ensembl Show fit	cytosolic thiouridylase subunit 2
chr9_+_16647922 Show fit	0.09	ENSRNOT00000031625	Klc4 Links NCBI RGD Ensembl Show fit	kinesin light chain 4
chr15_-_58171049 Show fit	0.09	ENSRNOT00000001371	Gpalpp1 Links NCBI RGD Ensembl Show fit	GPALPP motifs containing 1
chr11_+_89277039 Show fit	0.09	ENSRNOT00000002511	Mzt2b Links NCBI RGD Ensembl Show fit	mitotic spindle organizing protein 2B
chr17_+_6665659 Show fit	0.09	ENSRNOT00000025980	Hnrnpk Links NCBI RGD Ensembl Show fit	heterogeneous nuclear ribonucleoprotein K
chr14_-_66771750 Show fit	0.09	ENSRNOT00000005587	Pacrgl Links NCBI RGD Ensembl Show fit	PARK2 co-regulated-like
chr16_+_32449116 Show fit	0.09	ENSRNOT00000050549	Clcn3 Links NCBI RGD Ensembl Show fit	chloride voltage-gated channel 3
chr6_+_26560601 Show fit	0.09	ENSRNOT00000077481	Gtf3c2 Links NCBI RGD Ensembl Show fit	general transcription factor IIIC subunit 2
chr16_+_19051965 Show fit	0.09	ENSRNOT00000016399	Slc35e1 Links NCBI RGD Ensembl Show fit	solute carrier family 35, member E1
chr1_+_80028928 Show fit	0.08	ENSRNOT00000012082	Fbxo46 Links NCBI RGD Ensembl Show fit	F-box protein 46
chr14_+_44580216 Show fit	0.08	ENSRNOT00000088674 ENSRNOT00000003907	Rfc1 Links NCBI RGD Ensembl Show fit	replication factor C subunit 1
chr17_+_507377 Show fit	0.08	ENSRNOT00000023638	Npepo Links NCBI RGD Ensembl Show fit	aminopeptidase O
chr9_-_28973246 Show fit	0.08	ENSRNOT00000091865 ENSRNOT00000015453	Rims1 Links NCBI RGD Ensembl Show fit	regulating synaptic membrane exocytosis 1
chr3_+_112519808 Show fit	0.08	ENSRNOT00000014129	Rpusd2 Links NCBI RGD Ensembl Show fit	RNA pseudouridylate synthase domain containing 2
chr7_-_137856485 Show fit	0.08	ENSRNOT00000007003	LOC688906 Links NCBI RGD Ensembl Show fit	similar to splicing factor, arginine/serine-rich 2, interacting protein
chr8_-_36410612 Show fit	0.08	ENSRNOT00000091308	Foxred1 Links NCBI RGD Ensembl Show fit	FAD-dependent oxidoreductase domain containing 1
chr19_+_37990374 Show fit	0.08	ENSRNOT00000026827	Dus2 Links NCBI RGD Ensembl Show fit	dihydrouridine synthase 2
chr3_+_147713821 Show fit	0.08	ENSRNOT00000007558	Csnk2a1 Links NCBI RGD Ensembl Show fit	casein kinase 2 alpha 1
chr19_+_37873515 Show fit	0.07	ENSRNOT00000026163 ENSRNOT00000089921	Pskh1 Links NCBI RGD Ensembl Show fit	protein serine kinase H1
chr3_-_140728129 Show fit	0.07	ENSRNOT00000015637	Ralgapa2 Links NCBI RGD Ensembl Show fit	Ral GTPase activating protein catalytic alpha subunit 2
chr14_-_1595972 Show fit	0.07	ENSRNOT00000075415	Pigg Links NCBI RGD Ensembl Show fit	phosphatidylinositol glycan anchor biosynthesis, class G
chr14_+_17064353 Show fit	0.07	ENSRNOT00000003052	Scarb2 Links NCBI RGD Ensembl Show fit	scavenger receptor class B, member 2
chr7_+_108613739 Show fit	0.07	ENSRNOT00000007564	Phf20l1 Links NCBI RGD Ensembl Show fit	PHD finger protein 20-like 1
chr7_-_116872511 Show fit	0.07	ENSRNOT00000010120	Zc3h3 Links NCBI RGD Ensembl Show fit	zinc finger CCCH type containing 3
chr3_-_9822182 Show fit	0.07	ENSRNOT00000076637 ENSRNOT00000010115	RGD1305178 Links NCBI RGD Ensembl Show fit	similar to Hypothetical protein MGC11690
chr19_+_43220508 Show fit	0.07	ENSRNOT00000091788 ENSRNOT00000084462 ENSRNOT00000087474	Ddx19a Links NCBI RGD Ensembl Show fit	DEAD-box helicase 19A
chr17_-_13586554 Show fit	0.07	ENSRNOT00000041371	Secisbp2 Links NCBI RGD Ensembl Show fit	SECIS binding protein 2
chr4_+_5841998 Show fit	0.07	ENSRNOT00000010025	Xrcc2 Links NCBI RGD Ensembl Show fit	X-ray repair cross complementing 2
chr7_+_122636171 Show fit	0.07	ENSRNOT00000068666	Xpnpep3 Links NCBI RGD Ensembl Show fit	X-prolyl aminopeptidase 3
chr14_-_2438592 Show fit	0.06	ENSRNOT00000072386	LOC100910143 Links NCBI RGD Ensembl Show fit	GPI ethanolamine phosphate transferase 2-like
chr5_+_150001281 Show fit	0.06	ENSRNOT00000034057	Mecr Links NCBI RGD Ensembl Show fit	mitochondrial trans-2-enoyl-CoA reductase
chr5_+_57291156 Show fit	0.06	ENSRNOT00000060692 ENSRNOT00000060691	Nfx1 Links NCBI RGD Ensembl Show fit	nuclear transcription factor, X-box binding 1
chr12_+_23514981 Show fit	0.06	ENSRNOT00000001937	Prkrip1 Links NCBI RGD Ensembl Show fit	Prkr interacting protein 1 (IL11 inducible)
chr1_-_218532118 Show fit	0.06	ENSRNOT00000086385 ENSRNOT00000018487	Ighmbp2 Links NCBI RGD Ensembl Show fit	immunoglobulin mu binding protein 2
chr10_+_70520206 Show fit	0.06	ENSRNOT00000088198 ENSRNOT00000090446 ENSRNOT00000085799	Ap2b1 Links NCBI RGD Ensembl Show fit	adaptor-related protein complex 2, beta 1 subunit
chr2_-_30340103 Show fit	0.06	ENSRNOT00000024023 ENSRNOT00000067722	Bdp1 Links NCBI RGD Ensembl Show fit	B double prime 1, subunit of RNA polymerase III transcription initiation factor IIIB
chr6_-_1622196 Show fit	0.06	ENSRNOT00000007492	Prkd3 Links NCBI RGD Ensembl Show fit	protein kinase D3
chr7_-_99677268 Show fit	0.06	ENSRNOT00000013315	RGD1564420 Links NCBI RGD Ensembl Show fit	similar to Hypothetical protein MGC31278
chr9_+_98621506 Show fit	0.06	ENSRNOT00000056612 ENSRNOT00000081992	Traf3ip1 Links NCBI RGD Ensembl Show fit	TRAF3 interacting protein 1
chr12_+_17277635 Show fit	0.06	ENSRNOT00000001734	LOC498154 Links NCBI RGD Ensembl Show fit	hypothetical protein LOC498154
chr16_+_74237001 Show fit	0.06	ENSRNOT00000026039	Polb Links NCBI RGD Ensembl Show fit	DNA polymerase beta
chr1_-_227002139 Show fit	0.06	ENSRNOT00000028405	Ccdc86 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 86
chr5_+_156850206 Show fit	0.06	ENSRNOT00000021833	Mul1 Links NCBI RGD Ensembl Show fit	mitochondrial E3 ubiquitin protein ligase 1
chr7_+_117773230 Show fit	0.06	ENSRNOT00000077562	Lrrc14 Links NCBI RGD Ensembl Show fit	leucine rich repeat containing 14
chr5_-_57008795 Show fit	0.06	ENSRNOT00000090891 ENSRNOT00000046463	Aptx Links NCBI RGD Ensembl Show fit	aprataxin
chr6_+_135610743 Show fit	0.06	ENSRNOT00000010906	Traf3 Links NCBI RGD Ensembl Show fit	Tnf receptor-associated factor 3
chr8_+_36410683 Show fit	0.06	ENSRNOT00000015177	Srpra Links NCBI RGD Ensembl Show fit	SRP receptor alpha subunit
chr3_+_7279340 Show fit	0.06	ENSRNOT00000017029	Ak8 Links NCBI RGD Ensembl Show fit	adenylate kinase 8
chr11_-_61748768 Show fit	0.06	ENSRNOT00000078879	Ccdc191 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 191
chr20_-_10257044 Show fit	0.05	ENSRNOT00000068289	Wdr4 Links NCBI RGD Ensembl Show fit	WD repeat domain 4
chr5_+_134593517 Show fit	0.05	ENSRNOT00000013471	Efcab14 Links NCBI RGD Ensembl Show fit	EF-hand calcium binding domain 14
chr12_+_504007 Show fit	0.05	ENSRNOT00000001475	Brca2 Links NCBI RGD Ensembl Show fit	BRCA2, DNA repair associated
chr20_+_38935820 Show fit	0.05	ENSRNOT00000001059	Hsf2 Links NCBI RGD Ensembl Show fit	heat shock transcription factor 2
chr4_+_99399148 Show fit	0.05	ENSRNOT00000088018	Rnf103 Links NCBI RGD Ensembl Show fit	ring finger protein 103
chr7_+_27081667 Show fit	0.05	ENSRNOT00000066143	Nfyb Links NCBI RGD Ensembl Show fit	nuclear transcription factor Y subunit beta
chr12_-_47031498 Show fit	0.05	ENSRNOT00000075320	Triap1 Links NCBI RGD Ensembl Show fit	TP53 regulated inhibitor of apoptosis 1
chrX_-_123474154 Show fit	0.05	ENSRNOT00000092415 ENSRNOT00000092455	RGD1564541 Links NCBI RGD Ensembl Show fit	similar to hypothetical protein FLJ22965
chr16_-_32439421 Show fit	0.05	ENSRNOT00000043100	Nek1 Links NCBI RGD Ensembl Show fit	NIMA-related kinase 1
chrX_+_158978755 Show fit	0.05	ENSRNOT00000066809	Slc9a6 Links NCBI RGD Ensembl Show fit	solute carrier family 9 member A6
chr1_-_63293635 Show fit	0.05	ENSRNOT00000090337	Zik1 Links NCBI RGD Ensembl Show fit	zinc finger protein interacting with K protein 1
chr10_+_4536180 Show fit	0.05	ENSRNOT00000003309	Zc3h7a Links NCBI RGD Ensembl Show fit	zinc finger CCCH type containing 7 A
chr7_-_24004774 Show fit	0.05	ENSRNOT00000007549	Pwp1 Links NCBI RGD Ensembl Show fit	PWP1 homolog, endonuclein
chr1_-_68269117 Show fit	0.04	ENSRNOT00000072367	LOC100911224 Links NCBI RGD Ensembl Show fit	zinc finger protein interacting with ribonucleoprotein K-like
chr8_+_132204604 Show fit	0.04	ENSRNOT00000084725	Exosc7 Links NCBI RGD Ensembl Show fit	exosome component 7
chr12_+_49328977 Show fit	0.04	ENSRNOT00000000898	Sgsm1 Links NCBI RGD Ensembl Show fit	small G protein signaling modulator 1
chr4_+_138855641 Show fit	0.04	ENSRNOT00000008526	Trnt1 Links NCBI RGD Ensembl Show fit	tRNA nucleotidyl transferase 1
chr9_-_10757720 Show fit	0.04	ENSRNOT00000083848	Uhrf1 Links NCBI RGD Ensembl Show fit	ubiquitin-like with PHD and ring finger domains 1
chr6_+_132090218 Show fit	0.04	ENSRNOT00000083208	Ccnk Links NCBI RGD Ensembl Show fit	cyclin K
chr13_+_67611708 Show fit	0.04	ENSRNOT00000063833	Tpr Links NCBI RGD Ensembl Show fit	translocated promoter region, nuclear basket protein
chr17_+_6840463 Show fit	0.04	ENSRNOT00000061233	Ubqln1 Links NCBI RGD Ensembl Show fit	ubiquilin 1
chr15_+_24056383 Show fit	0.04	ENSRNOT00000015120	Socs4 Links NCBI RGD Ensembl Show fit	suppressor of cytokine signaling 4
chr6_+_52751106 Show fit	0.04	ENSRNOT00000014373	Twistnb Links NCBI RGD Ensembl Show fit	TWIST neighbor
chr3_+_111097326 Show fit	0.04	ENSRNOT00000018717	Vps18 Links NCBI RGD Ensembl Show fit	VPS18 CORVET/HOPS core subunit
chrX_-_62698830 Show fit	0.04	ENSRNOT00000076359	Pola1 Links NCBI RGD Ensembl Show fit	DNA polymerase alpha 1, catalytic subunit
chr11_-_72929003 Show fit	0.04	ENSRNOT00000071483	Ncbp2 Links NCBI RGD Ensembl Show fit	nuclear cap binding protein subunit 2
chrX_-_1786978 Show fit	0.04	ENSRNOT00000011317	Rbm10 Links NCBI RGD Ensembl Show fit	RNA binding motif protein 10
chr14_+_2100106 Show fit	0.04	ENSRNOT00000000064	Gak Links NCBI RGD Ensembl Show fit	cyclin G associated kinase
chr17_-_84830185 Show fit	0.03	ENSRNOT00000040697	Skida1 Links NCBI RGD Ensembl Show fit	SKI/DACH domain containing 1
chr5_-_166133274 Show fit	0.03	ENSRNOT00000078830	Kif1b Links NCBI RGD Ensembl Show fit	kinesin family member 1B
chr6_+_132090633 Show fit	0.03	ENSRNOT00000057171	Ccnk Links NCBI RGD Ensembl Show fit	cyclin K
chr1_-_102849430 Show fit	0.03	ENSRNOT00000086856	Saa4 Links NCBI RGD Ensembl Show fit	serum amyloid A4
chr9_-_44456554 Show fit	0.03	ENSRNOT00000080011	Tsga10 Links NCBI RGD Ensembl Show fit	testis specific 10
chr16_+_6712389 Show fit	0.03	ENSRNOT00000035542	Rft1 Links NCBI RGD Ensembl Show fit	RFT1 homolog
chr5_+_117583502 Show fit	0.03	ENSRNOT00000010933	Usp1 Links NCBI RGD Ensembl Show fit	ubiquitin specific peptidase 1
chr10_+_38104558 Show fit	0.03	ENSRNOT00000067809	Fstl4 Links NCBI RGD Ensembl Show fit	follistatin-like 4
chr11_-_64752544 Show fit	0.03	ENSRNOT00000048738	Tmem39a Links NCBI RGD Ensembl Show fit	transmembrane protein 39a
chr20_-_4530126 Show fit	0.03	ENSRNOT00000000481	Skiv2l Links NCBI RGD Ensembl Show fit	Ski2 like RNA helicase
chr15_-_34431325 Show fit	0.03	ENSRNOT00000027511	Dhrs1 Links NCBI RGD Ensembl Show fit	dehydrogenase/reductase 1
chr9_-_65916949 Show fit	0.03	ENSRNOT00000077483	Tmem237 Links NCBI RGD Ensembl Show fit	transmembrane protein 237
chr1_-_221420115 Show fit	0.03	ENSRNOT00000028475	Mrpl49 Links NCBI RGD Ensembl Show fit	mitochondrial ribosomal protein L49
chr4_-_7529106 Show fit	0.03	ENSRNOT00000013865	Nupl2 Links NCBI RGD Ensembl Show fit	nucleoporin like 2
chr8_-_132032971 Show fit	0.03	ENSRNOT00000005502	RGD1311745 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA 1110059G10
chr3_+_138715570 Show fit	0.03	ENSRNOT00000064723	Sec23b Links NCBI RGD Ensembl Show fit	Sec23 homolog B, coat complex II component
chr12_+_24669449 Show fit	0.03	ENSRNOT00000044449	Wbscr22 Links NCBI RGD Ensembl Show fit	Williams Beuren syndrome chromosome region 22
chr8_-_128009951 Show fit	0.03	ENSRNOT00000018056	Oxsr1 Links NCBI RGD Ensembl Show fit	oxidative-stress responsive 1
chr10_-_68142864 Show fit	0.03	ENSRNOT00000004609	Myo1d Links NCBI RGD Ensembl Show fit	myosin ID
chr2_+_122782060 Show fit	0.03	ENSRNOT00000019108 ENSRNOT00000089353	Acad9 Links NCBI RGD Ensembl Show fit	acyl-CoA dehydrogenase family, member 9
chr12_-_48663143 Show fit	0.03	ENSRNOT00000082809	Ficd Links NCBI RGD Ensembl Show fit	FIC domain containing
chr6_-_99400822 Show fit	0.03	ENSRNOT00000089594	Zbtb25 Links NCBI RGD Ensembl Show fit	zinc finger and BTB domain containing 25
chr7_-_135850542 Show fit	0.02	ENSRNOT00000038032	Twf1 Links NCBI RGD Ensembl Show fit	twinfilin actin-binding protein 1
chr13_-_26850460 Show fit	0.02	ENSRNOT00000003715	Vps4b Links NCBI RGD Ensembl Show fit	vacuolar protein sorting 4 homolog B
chr17_+_11856525 Show fit	0.02	ENSRNOT00000014546	Sptlc1 Links NCBI RGD Ensembl Show fit	serine palmitoyltransferase, long chain base subunit 1
chrX_+_159513800 Show fit	0.02	ENSRNOT00000065636	Htatsf1 Links NCBI RGD Ensembl Show fit	HIV-1 Tat specific factor 1
chr19_+_31867981 Show fit	0.02	ENSRNOT00000024753	Abce1 Links NCBI RGD Ensembl Show fit	ATP binding cassette subfamily E member 1
chr19_+_43251539 Show fit	0.02	ENSRNOT00000024793	Ddx19a Links NCBI RGD Ensembl Show fit	DEAD-box helicase 19A
chr4_-_51946715 Show fit	0.02	ENSRNOT00000079130	Pot1 Links NCBI RGD Ensembl Show fit	protection of telomeres 1
chr7_-_64341207 Show fit	0.02	ENSRNOT00000006051	Tmem5 Links NCBI RGD Ensembl Show fit	transmembrane protein 5
chr19_+_25262076 Show fit	0.02	ENSRNOT00000030658	RGD1306072 Links NCBI RGD Ensembl Show fit	hypothetical LOC304654
chr1_-_219863926 Show fit	0.02	ENSRNOT00000026454 ENSRNOT00000066455	Rce1 Links NCBI RGD Ensembl Show fit	Ras converting CAAX endopeptidase 1
chr4_+_7122890 Show fit	0.02	ENSRNOT00000076339 ENSRNOT00000076418 ENSRNOT00000014718	Abcf2 Links NCBI RGD Ensembl Show fit	ATP binding cassette subfamily F member 2
chr2_+_264864351 Show fit	0.02	ENSRNOT00000015434	Lrrc40 Links NCBI RGD Ensembl Show fit	leucine rich repeat containing 40
chr12_-_37444282 Show fit	0.02	ENSRNOT00000001368	Gtf2h3 Links NCBI RGD Ensembl Show fit	general transcription factor IIH subunit 3
chr19_-_31867850 Show fit	0.02	ENSRNOT00000024689	Anapc10 Links NCBI RGD Ensembl Show fit	anaphase promoting complex subunit 10
chr2_+_27365148 Show fit	0.02	ENSRNOT00000021549	Col4a3bp Links NCBI RGD Ensembl Show fit	collagen type IV alpha 3 binding protein
chr6_-_77243677 Show fit	0.02	ENSRNOT00000011419	Mbip Links NCBI RGD Ensembl Show fit	MAP3K12 binding inhibitory protein 1
chr14_+_36216002 Show fit	0.02	ENSRNOT00000038506	Scfd2 Links NCBI RGD Ensembl Show fit	sec1 family domain containing 2
chr1_+_224957517 Show fit	0.02	ENSRNOT00000026033	Nxf1 Links NCBI RGD Ensembl Show fit	nuclear RNA export factor 1
chr1_+_221099998 Show fit	0.02	ENSRNOT00000028262	Ltbp3 Links NCBI RGD Ensembl Show fit	latent transforming growth factor beta binding protein 3
chr5_+_148320438 Show fit	0.02	ENSRNOT00000018742	Pef1 Links NCBI RGD Ensembl Show fit	penta-EF hand domain containing 1
chr10_-_38969501 Show fit	0.02	ENSRNOT00000090691 ENSRNOT00000081309 ENSRNOT00000010029	Il4 Links NCBI RGD Ensembl Show fit	interleukin 4
chr3_+_58443101 Show fit	0.02	ENSRNOT00000002075	Itga6 Links NCBI RGD Ensembl Show fit	integrin subunit alpha 6
chr3_-_93698121 Show fit	0.02	ENSRNOT00000012094 ENSRNOT00000044143	Nat10 Links NCBI RGD Ensembl Show fit	N-acetyltransferase 10
chr12_-_24669464 Show fit	0.02	ENSRNOT00000043393	Dnajc30 Links NCBI RGD Ensembl Show fit	DnaJ heat shock protein family (Hsp40) member C30
chr14_+_100415668 Show fit	0.01	ENSRNOT00000008057	C1d Links NCBI RGD Ensembl Show fit	C1D nuclear receptor co-repressor
chr2_-_211638788 Show fit	0.01	ENSRNOT00000027666	Stxbp3 Links NCBI RGD Ensembl Show fit	syntaxin binding protein 3
chr5_+_76150840 Show fit	0.01	ENSRNOT00000020702	Dnajc25 Links NCBI RGD Ensembl Show fit	DnaJ heat shock protein family (Hsp40) member C25
chr7_-_31872423 Show fit	0.01	ENSRNOT00000012715	Tmpo Links NCBI RGD Ensembl Show fit	thymopoietin

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.4	GO:1990414	replication-born double-strand break repair via sister chromatid exchange(GO:1990414)
0.1	0.2	GO:1990790	response to glial cell derived neurotrophic factor(GO:1990790) cellular response to glial cell derived neurotrophic factor(GO:1990792)
0.1	0.2	GO:0010847	regulation of chromatin assembly(GO:0010847)
0.1	0.3	GO:0071557	histone H3-K27 demethylation(GO:0071557)
0.1	0.2	GO:0070649	formin-nucleated actin cable assembly(GO:0070649)
0.0	0.1	GO:0033540	fatty acid beta-oxidation using acyl-CoA oxidase(GO:0033540)
0.0	0.1	GO:0019086	late viral transcription(GO:0019086)
0.0	0.1	GO:0043137	DNA replication, removal of RNA primer(GO:0043137)
0.0	0.1	GO:0090526	regulation of gluconeogenesis involved in cellular glucose homeostasis(GO:0090526)
0.0	0.2	GO:0015074	DNA integration(GO:0015074)
0.0	0.1	GO:0044330	canonical Wnt signaling pathway involved in positive regulation of wound healing(GO:0044330)
0.0	0.2	GO:0045829	negative regulation of isotype switching(GO:0045829)
0.0	0.1	GO:1901491	negative regulation of lymphangiogenesis(GO:1901491)
0.0	0.2	GO:0006384	transcription initiation from RNA polymerase III promoter(GO:0006384)
0.0	0.1	GO:0002143	tRNA wobble position uridine thiolation(GO:0002143)
0.0	0.2	GO:0021960	anterior commissure morphogenesis(GO:0021960)
0.0	0.1	GO:0045716	positive regulation of low-density lipoprotein particle receptor biosynthetic process(GO:0045716)
0.0	0.1	GO:0070827	chromatin maintenance(GO:0070827)
0.0	0.2	GO:1901621	negative regulation of smoothened signaling pathway involved in dorsal/ventral neural tube patterning(GO:1901621)
0.0	0.4	GO:0046831	regulation of RNA export from nucleus(GO:0046831)
0.0	0.1	GO:0031632	positive regulation of synaptic vesicle fusion to presynaptic membrane(GO:0031632)
0.0	0.1	GO:0038165	oncostatin-M-mediated signaling pathway(GO:0038165) leukemia inhibitory factor signaling pathway(GO:0048861)
0.0	0.2	GO:0034497	protein localization to pre-autophagosomal structure(GO:0034497)
0.0	0.1	GO:0090074	negative regulation of protein homodimerization activity(GO:0090074)
0.0	0.2	GO:0006297	nucleotide-excision repair, DNA gap filling(GO:0006297)
0.0	0.1	GO:0010032	meiotic chromosome condensation(GO:0010032)
0.0	0.2	GO:0060158	phospholipase C-activating dopamine receptor signaling pathway(GO:0060158)
0.0	0.1	GO:1904569	regulation of selenocysteine incorporation(GO:1904569)
0.0	0.4	GO:0045948	positive regulation of translational initiation(GO:0045948)
0.0	0.1	GO:0097401	synaptic vesicle lumen acidification(GO:0097401)
0.0	0.2	GO:0046116	queuosine biosynthetic process(GO:0008616) queuosine metabolic process(GO:0046116)
0.0	0.1	GO:0060178	regulation of exocyst localization(GO:0060178)
0.0	0.1	GO:0045218	zonula adherens maintenance(GO:0045218)
0.0	0.2	GO:0015886	heme transport(GO:0015886)
0.0	0.1	GO:0090172	meiotic metaphase I plate congression(GO:0043060) microtubule cytoskeleton organization involved in homologous chromosome segregation(GO:0090172)
0.0	0.1	GO:1990928	negative regulation of guanyl-nucleotide exchange factor activity(GO:1905098) response to amino acid starvation(GO:1990928)
0.0	0.1	GO:0045347	negative regulation of MHC class II biosynthetic process(GO:0045347)
0.0	0.2	GO:0016926	protein desumoylation(GO:0016926)
0.0	0.1	GO:0000972	transcription-dependent tethering of RNA polymerase II gene DNA at nuclear periphery(GO:0000972)
0.0	0.3	GO:0072600	establishment of protein localization to Golgi(GO:0072600)
0.0	0.1	GO:2000234	positive regulation of ribosome biogenesis(GO:0090070) positive regulation of rRNA processing(GO:2000234)
0.0	0.1	GO:1904925	negative regulation of defense response to virus by host(GO:0050689) positive regulation of macromitophagy(GO:1901526) positive regulation of mitophagy in response to mitochondrial depolarization(GO:1904925)
0.0	0.2	GO:0044827	modulation by host of viral genome replication(GO:0044827)
0.0	0.1	GO:0006685	sphingomyelin catabolic process(GO:0006685)
0.0	0.0	GO:0034140	negative regulation of toll-like receptor 3 signaling pathway(GO:0034140)
0.0	0.2	GO:0080182	histone H3-K4 trimethylation(GO:0080182)
0.0	0.1	GO:0002943	tRNA dihydrouridine synthesis(GO:0002943)
0.0	0.2	GO:0000185	activation of MAPKKK activity(GO:0000185)
0.0	0.0	GO:0006272	leading strand elongation(GO:0006272)
0.0	0.0	GO:0061738	late endosomal microautophagy(GO:0061738)
0.0	0.0	GO:0034773	histone H4-K20 trimethylation(GO:0034773)
0.0	0.1	GO:0042148	meiotic DNA recombinase assembly(GO:0000707) strand invasion(GO:0042148)
0.0	0.1	GO:0099590	neurotransmitter receptor internalization(GO:0099590)
0.0	0.1	GO:0006283	transcription-coupled nucleotide-excision repair(GO:0006283)
0.0	0.1	GO:0021684	cerebellar granular layer formation(GO:0021684) cerebellar granule cell differentiation(GO:0021707)
0.0	0.1	GO:0089700	protein kinase D signaling(GO:0089700)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.4	GO:0005642	annulate lamellae(GO:0005642)
0.0	0.1	GO:0005760	gamma DNA polymerase complex(GO:0005760)
0.0	0.2	GO:1990726	Lsm1-7-Pat1 complex(GO:1990726)
0.0	0.4	GO:0044232	organelle membrane contact site(GO:0044232)
0.0	0.1	GO:0002945	cyclin K-CDK12 complex(GO:0002944) cyclin K-CDK13 complex(GO:0002945)
0.0	0.3	GO:0044666	MLL3/4 complex(GO:0044666)
0.0	0.1	GO:0005956	protein kinase CK2 complex(GO:0005956)
0.0	0.2	GO:0000445	THO complex(GO:0000347) THO complex part of transcription export complex(GO:0000445)
0.0	0.1	GO:0090576	RNA polymerase III transcription factor complex(GO:0090576)
0.0	0.1	GO:0005851	eukaryotic translation initiation factor 2B complex(GO:0005851)
0.0	0.1	GO:0008024	cyclin/CDK positive transcription elongation factor complex(GO:0008024)
0.0	0.1	GO:0000796	condensin complex(GO:0000796)
0.0	0.1	GO:0005663	DNA replication factor C complex(GO:0005663)
0.0	0.1	GO:0033063	Rad51B-Rad51C-Rad51D-XRCC2 complex(GO:0033063)
0.0	0.1	GO:0048188	Set1C/COMPASS complex(GO:0048188)
0.0	0.1	GO:0098831	presynaptic active zone cytoplasmic component(GO:0098831)
0.0	0.0	GO:0055087	Ski complex(GO:0055087)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.4	GO:0004711	ribosomal protein S6 kinase activity(GO:0004711)
0.1	0.2	GO:0031826	type 2A serotonin receptor binding(GO:0031826)
0.1	0.3	GO:0009378	four-way junction helicase activity(GO:0009378)
0.0	0.4	GO:0008429	phosphatidylethanolamine binding(GO:0008429)
0.0	0.3	GO:0043495	protein anchor(GO:0043495)
0.0	0.1	GO:0004924	oncostatin-M receptor activity(GO:0004924)
0.0	0.1	GO:0051377	mannose-ethanolamine phosphotransferase activity(GO:0051377)
0.0	0.2	GO:0008349	MAP kinase kinase kinase kinase activity(GO:0008349)
0.0	0.1	GO:0016890	site-specific endodeoxyribonuclease activity, specific for altered base(GO:0016890)
0.0	0.1	GO:0042392	sphingosine-1-phosphate phosphatase activity(GO:0042392)
0.0	0.2	GO:0070137	ubiquitin-like protein-specific endopeptidase activity(GO:0070137) SUMO-specific endopeptidase activity(GO:0070139)
0.0	0.1	GO:0072320	volume-sensitive chloride channel activity(GO:0072320)
0.0	0.1	GO:0008240	tripeptidyl-peptidase activity(GO:0008240)
0.0	0.1	GO:0003997	acyl-CoA oxidase activity(GO:0003997)
0.0	0.3	GO:0034450	ubiquitin-ubiquitin ligase activity(GO:0034450)
0.0	0.1	GO:1990955	G-rich single-stranded DNA binding(GO:1990955)
0.0	0.2	GO:1990247	N6-methyladenosine-containing RNA binding(GO:1990247)
0.0	0.2	GO:0008479	queuine tRNA-ribosyltransferase activity(GO:0008479)
0.0	0.2	GO:0015232	heme transporter activity(GO:0015232)
0.0	0.1	GO:0010484	H3 histone acetyltransferase activity(GO:0010484)
0.0	0.1	GO:1990715	mRNA CDS binding(GO:1990715) C-rich single-stranded DNA binding(GO:1990829)
0.0	0.1	GO:1990050	phosphatidic acid transporter activity(GO:1990050)
0.0	0.1	GO:0004565	beta-galactosidase activity(GO:0004565)
0.0	0.1	GO:0019166	trans-2-enoyl-CoA reductase (NADPH) activity(GO:0019166)
0.0	0.1	GO:0000995	transcription factor activity, core RNA polymerase III binding(GO:0000995) TFIIIC-class transcription factor binding(GO:0001156)
0.0	0.1	GO:0004127	cytidylate kinase activity(GO:0004127)
0.0	0.1	GO:0005078	MAP-kinase scaffold activity(GO:0005078)
0.0	0.1	GO:0017150	tRNA dihydrouridine synthase activity(GO:0017150)
0.0	0.2	GO:0009982	pseudouridine synthase activity(GO:0009982)
0.0	0.1	GO:0097322	7SK snRNA binding(GO:0097322)
0.0	0.1	GO:0098518	polynucleotide phosphatase activity(GO:0098518)
0.0	0.1	GO:0035368	selenocysteine insertion sequence binding(GO:0035368)
0.0	0.1	GO:0000150	recombinase activity(GO:0000150)
0.0	0.0	GO:0044729	hemi-methylated DNA-binding(GO:0044729)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	PID THROMBIN PAR4 PATHWAY	PAR4-mediated thrombin signaling events
0.0	0.1	PID RANBP2 PATHWAY	Sumoylation by RanBP2 regulates transcriptional repression

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.6	REACTOME NEP NS2 INTERACTS WITH THE CELLULAR EXPORT MACHINERY	Genes involved in NEP/NS2 Interacts with the Cellular Export Machinery
0.0	0.2	REACTOME REGULATION OF INSULIN SECRETION BY ACETYLCHOLINE	Genes involved in Regulation of Insulin Secretion by Acetylcholine
0.0	0.2	REACTOME TANDEM PORE DOMAIN POTASSIUM CHANNELS	Genes involved in Tandem pore domain potassium channels
0.0	0.4	REACTOME PIP3 ACTIVATES AKT SIGNALING	Genes involved in PIP3 activates AKT signaling
0.0	0.1	REACTOME RAF MAP KINASE CASCADE	Genes involved in RAF/MAP kinase cascade
0.0	0.4	REACTOME KINESINS	Genes involved in Kinesins
0.0	0.2	REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE	Genes involved in mRNA Decay by 5' to 3' Exoribonuclease
0.0	0.2	REACTOME INHIBITION OF REPLICATION INITIATION OF DAMAGED DNA BY RB1 E2F1	Genes involved in Inhibition of replication initiation of damaged DNA by RB1/E2F1
0.0	0.1	REACTOME VITAMIN B5 PANTOTHENATE METABOLISM	Genes involved in Vitamin B5 (pantothenate) metabolism