GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
E2f7 Links NCBI RGD Ensembl	ENSRNOG00000026252	E2F transcription factor 7

Gene	Promoter	Pearson corr. coef.	P-value	Plot
E2f7	rn6_v1_chr7_+_53275676_53275676	-0.05	9.4e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr17_-_44793927 Show fit	0.06	ENSRNOT00000086309	Hist1h2bo Links NCBI RGD Ensembl Show fit	histone cluster 1 H2B family member o
chr3_+_103747654 Show fit	0.05	ENSRNOT00000006887	Nop10 Links NCBI RGD Ensembl Show fit	NOP10 ribonucleoprotein
chr8_+_59344083 Show fit	0.04	ENSRNOT00000031175	Crabp1 Links NCBI RGD Ensembl Show fit	cellular retinoic acid binding protein 1
chr17_+_44794130 Show fit	0.04	ENSRNOT00000077571	Hist1h2ac Links NCBI RGD Ensembl Show fit	histone cluster 1, H2ac
chr17_-_44520240 Show fit	0.03	ENSRNOT00000086538	Hist1h2bh Links NCBI RGD Ensembl Show fit	histone cluster 1 H2B family member h
chr10_+_62650719 Show fit	0.03	ENSRNOT00000010691	Tp53i13 Links NCBI RGD Ensembl Show fit	tumor protein p53 inducible protein 13
chr12_+_22665112 Show fit	0.03	ENSRNOT00000001918	Ap1s1 Links NCBI RGD Ensembl Show fit	adaptor-related protein complex 1, sigma 1 subunit
chr17_+_44763598 Show fit	0.03	ENSRNOT00000079880	Hist1h3b Links NCBI RGD Ensembl Show fit	histone cluster 1, H3b
chr13_-_73390393 Show fit	0.03	ENSRNOT00000067253 ENSRNOT00000093438	Lhx4 Links NCBI RGD Ensembl Show fit	LIM homeobox 4
chr3_+_59153280 Show fit	0.03	ENSRNOT00000002066	Cdca7 Links NCBI RGD Ensembl Show fit	cell division cycle associated 7
chr17_-_44815995 Show fit	0.03	ENSRNOT00000091201	RGD1562378 Links NCBI RGD Ensembl Show fit	histone H4 variant H4-v.1
chr10_-_57653359 Show fit	0.03	ENSRNOT00000089638	Derl2 Links NCBI RGD Ensembl Show fit	derlin 2
chr11_+_86890585 Show fit	0.02	ENSRNOT00000002579	Ranbp1 Links NCBI RGD Ensembl Show fit	RAN binding protein 1
chr1_+_80056755 Show fit	0.02	ENSRNOT00000021221	Snrpd2 Links NCBI RGD Ensembl Show fit	small nuclear ribonucleoprotein D2 polypeptide
chr17_+_9830332 Show fit	0.02	ENSRNOT00000021946	Rab24 Links NCBI RGD Ensembl Show fit	RAB24, member RAS oncogene family
chr1_-_84986581 Show fit	0.02	ENSRNOT00000025819	Psmc4 Links NCBI RGD Ensembl Show fit	proteasome 26S subunit, ATPase 4
chr1_+_80000165 Show fit	0.02	ENSRNOT00000084912	Six5 Links NCBI RGD Ensembl Show fit	SIX homeobox 5
chr5_-_21345805 Show fit	0.02	ENSRNOT00000081296 ENSRNOT00000007802	Car8 Links NCBI RGD Ensembl Show fit	carbonic anhydrase 8
chr13_-_109849632 Show fit	0.02	ENSRNOT00000005085	Atf3 Links NCBI RGD Ensembl Show fit	activating transcription factor 3
chr1_-_48033343 Show fit	0.02	ENSRNOT00000019531 ENSRNOT00000076422	Tcp1 Links NCBI RGD Ensembl Show fit	t-complex 1
chr10_-_6870011 Show fit	0.02	ENSRNOT00000003439	RGD1309748 Links NCBI RGD Ensembl Show fit	similar to CG4768-PA
chr10_+_3218466 Show fit	0.02	ENSRNOT00000093629 ENSRNOT00000093338 ENSRNOT00000077695	Ntan1 Links NCBI RGD Ensembl Show fit	N-terminal asparagine amidase
chr10_+_13786459 Show fit	0.02	ENSRNOT00000010915	Rnps1 Links NCBI RGD Ensembl Show fit	RNA binding protein with serine rich domain 1
chr10_+_101288489 Show fit	0.02	ENSRNOT00000003511	Sox9 Links NCBI RGD Ensembl Show fit	SRY box 9
chr1_+_48033768 Show fit	0.02	ENSRNOT00000020064	Mrpl18 Links NCBI RGD Ensembl Show fit	mitochondrial ribosomal protein L18
chr14_-_86706626 Show fit	0.01	ENSRNOT00000082893	H2afv Links NCBI RGD Ensembl Show fit	H2A histone family, member V
chr2_-_188413219 Show fit	0.01	ENSRNOT00000065065	Fdps Links NCBI RGD Ensembl Show fit	farnesyl diphosphate synthase
chr3_-_176431423 Show fit	0.01	ENSRNOT00000037271	Ythdf1 Links NCBI RGD Ensembl Show fit	YTH N(6)-methyladenosine RNA binding protein 1
chr17_-_43798383 Show fit	0.01	ENSRNOT00000075069	LOC684828 Links NCBI RGD Ensembl Show fit	similar to Histone H1.2 (H1 VAR.1) (H1c)
chr6_+_37144787 Show fit	0.01	ENSRNOT00000075503	Rad51ap2 Links NCBI RGD Ensembl Show fit	RAD51 associated protein 2
chr2_+_187893368 Show fit	0.01	ENSRNOT00000092031	Mex3a Links NCBI RGD Ensembl Show fit	mex-3 RNA binding family member A
chr2_-_250232295 Show fit	0.01	ENSRNOT00000082132	Lmo4 Links NCBI RGD Ensembl Show fit	LIM domain only 4
chr9_-_100888107 Show fit	0.01	ENSRNOT00000024794	Thap4 Links NCBI RGD Ensembl Show fit	THAP domain containing 4
chr20_+_4530342 Show fit	0.01	ENSRNOT00000076352 ENSRNOT00000000478 ENSRNOT00000075925	Nelfe Links NCBI RGD Ensembl Show fit	negative elongation factor complex member E
chr8_+_119135013 Show fit	0.01	ENSRNOT00000056114	Prss50 Links NCBI RGD Ensembl Show fit	protease, serine, 50
chr17_+_44738643 Show fit	0.01	ENSRNOT00000087643	LOC100910554 Links NCBI RGD Ensembl Show fit	histone H2A type 1-like
chr15_-_42518855 Show fit	0.01	ENSRNOT00000076451	Esco2 Links NCBI RGD Ensembl Show fit	establishment of sister chromatid cohesion N-acetyltransferase 2
chr17_+_44528125 Show fit	0.01	ENSRNOT00000084538	LOC680322 Links NCBI RGD Ensembl Show fit	similar to Histone H2A type 1
chr1_-_228263198 Show fit	0.01	ENSRNOT00000028572	Olr1874 Links NCBI RGD Ensembl Show fit	olfactory receptor 1874
chr11_-_89260297 Show fit	0.01	ENSRNOT00000057502	Spidr Links NCBI RGD Ensembl Show fit	scaffolding protein involved in DNA repair
chr16_-_6404578 Show fit	0.01	ENSRNOT00000051371	Cacna1d Links NCBI RGD Ensembl Show fit	calcium voltage-gated channel subunit alpha1 D
chr3_+_114129589 Show fit	0.01	ENSRNOT00000056119	Terb2 Links NCBI RGD Ensembl Show fit	telomere repeat binding bouquet formation protein 2
chr11_+_82373870 Show fit	0.01	ENSRNOT00000002429	Tra2b Links NCBI RGD Ensembl Show fit	transformer 2 beta homolog (Drosophila)
chr17_-_44841382 Show fit	0.01	ENSRNOT00000080119	Hist1h2ak Links NCBI RGD Ensembl Show fit	histone cluster 1, H2ak
chr3_-_91217491 Show fit	0.01	ENSRNOT00000006115	Rag1 Links NCBI RGD Ensembl Show fit	recombination activating 1
chr1_-_142759882 Show fit	0.01	ENSRNOT00000015218	Sec11a Links NCBI RGD Ensembl Show fit	SEC11 homolog A, signal peptidase complex subunit
chr1_+_145770135 Show fit	0.01	ENSRNOT00000015320	Stard5 Links NCBI RGD Ensembl Show fit	StAR-related lipid transfer domain containing 5
chr2_-_250778269 Show fit	0.01	ENSRNOT00000085670 ENSRNOT00000083535 ENSRNOT00000017824	Clca5 Links NCBI RGD Ensembl Show fit	chloride channel accessory 5
chr10_-_108150511 Show fit	0.01	ENSRNOT00000073337	Cbx8 Links NCBI RGD Ensembl Show fit	chromobox 8
chr6_-_38228379 Show fit	0.01	ENSRNOT00000084924	Mycn Links NCBI RGD Ensembl Show fit	v-myc avian myelocytomatosis viral oncogene neuroblastoma derived homolog
chr4_-_157679962 Show fit	0.01	ENSRNOT00000050443	Gapdh Links NCBI RGD Ensembl Show fit	glyceraldehyde-3-phosphate dehydrogenase
chr20_-_5037022 Show fit	0.01	ENSRNOT00000091022 ENSRNOT00000060762	Msh5 Links NCBI RGD Ensembl Show fit	mutS homolog 5
chr1_+_193335645 Show fit	0.01	ENSRNOT00000019640	Lcmt1 Links NCBI RGD Ensembl Show fit	leucine carboxyl methyltransferase 1
chr1_-_228226354 Show fit	0.01	ENSRNOT00000029224	Olr318 Links NCBI RGD Ensembl Show fit	olfactory receptor 318
chr3_-_83048289 Show fit	0.01	ENSRNOT00000047571 ENSRNOT00000012806	Hsd17b12 Links NCBI RGD Ensembl Show fit	hydroxysteroid (17-beta) dehydrogenase 12
chr1_-_82546937 Show fit	0.01	ENSRNOT00000028100	Hnrnpul1 Links NCBI RGD Ensembl Show fit	heterogeneous nuclear ribonucleoprotein U-like 1
chr5_-_150609352 Show fit	0.01	ENSRNOT00000074374	Phactr4 Links NCBI RGD Ensembl Show fit	phosphatase and actin regulator 4
chr7_-_95310005 Show fit	0.01	ENSRNOT00000005815	Mrpl13 Links NCBI RGD Ensembl Show fit	mitochondrial ribosomal protein L13
chr1_-_80056574 Show fit	0.01	ENSRNOT00000021200	Qpctl Links NCBI RGD Ensembl Show fit	glutaminyl-peptide cyclotransferase-like
chr6_+_43884678 Show fit	0.01	ENSRNOT00000091551	Rrm2 Links NCBI RGD Ensembl Show fit	ribonucleotide reductase regulatory subunit M2
chr10_-_103736973 Show fit	0.01	ENSRNOT00000004372	Nat9 Links NCBI RGD Ensembl Show fit	N-acetyltransferase 9
chr7_+_123531682 Show fit	0.01	ENSRNOT00000010606	Wbp2nl Links NCBI RGD Ensembl Show fit	WBP2 N-terminal like
chr4_+_57823411 Show fit	0.01	ENSRNOT00000030462 ENSRNOT00000088235	Ssmem1 Links NCBI RGD Ensembl Show fit	serine-rich single-pass membrane protein 1
chr8_+_48422036 Show fit	0.01	ENSRNOT00000036051	Usp2 Links NCBI RGD Ensembl Show fit	ubiquitin specific peptidase 2
chr3_-_124145566 Show fit	0.01	ENSRNOT00000028877	Adra1d Links NCBI RGD Ensembl Show fit	adrenoceptor alpha 1D
chr13_-_80703615 Show fit	0.01	ENSRNOT00000004599	Fmo4 Links NCBI RGD Ensembl Show fit	flavin containing monooxygenase 4
chr8_+_39960542 Show fit	0.01	ENSRNOT00000013370	Msantd2 Links NCBI RGD Ensembl Show fit	Myb/SANT-like DNA-binding domain containing 2
chr19_+_14523554 Show fit	0.00	ENSRNOT00000084271 ENSRNOT00000064731	Mcm5 Links NCBI RGD Ensembl Show fit	minichromosome maintenance complex component 5
chr6_+_10912383 Show fit	0.00	ENSRNOT00000061747 ENSRNOT00000086247	Ttc7a Links NCBI RGD Ensembl Show fit	tetratricopeptide repeat domain 7A
chr6_+_36941233 Show fit	0.00	ENSRNOT00000007073	Smc6 Links NCBI RGD Ensembl Show fit	structural maintenance of chromosomes 6
chr10_+_105235289 Show fit	0.00	ENSRNOT00000075548	Galr2 Links NCBI RGD Ensembl Show fit	galanin receptor 2
chr10_-_78993045 Show fit	0.00	ENSRNOT00000043005	LOC100363469 Links NCBI RGD Ensembl Show fit	ribosomal protein S24-like
chr4_-_144318580 Show fit	0.00	ENSRNOT00000007591	Ssuh2 Links NCBI RGD Ensembl Show fit	ssu-2 homolog
chr5_+_154205402 Show fit	0.00	ENSRNOT00000064925	Srsf10 Links NCBI RGD Ensembl Show fit	serine and arginine rich splicing factor 10
chr8_+_108958046 Show fit	0.00	ENSRNOT00000079618 ENSRNOT00000066917	Stag1 Links NCBI RGD Ensembl Show fit	stromal antigen 1
chr20_-_3298835 Show fit	0.00	ENSRNOT00000083617	Gnl1 Links NCBI RGD Ensembl Show fit	G protein nucleolar 1
chr2_-_188471988 Show fit	0.00	ENSRNOT00000027785	Hcn3 Links NCBI RGD Ensembl Show fit	hyperpolarization-activated cyclic nucleotide-gated potassium channel 3
chr13_+_90909486 Show fit	0.00	ENSRNOT00000011450	Cfap45 Links NCBI RGD Ensembl Show fit	cilia and flagella associated protein 45
chr10_-_46206135 Show fit	0.00	ENSRNOT00000091471	Cops3 Links NCBI RGD Ensembl Show fit	COP9 signalosome subunit 3
chr7_+_12192088 Show fit	0.00	ENSRNOT00000040170	Mex3d Links NCBI RGD Ensembl Show fit	mex-3 RNA binding family member D
chr20_+_19318250 Show fit	0.00	ENSRNOT00000000299	Phyhipl Links NCBI RGD Ensembl Show fit	phytanoyl-CoA 2-hydroxylase interacting protein-like
chr1_-_226935689 Show fit	0.00	ENSRNOT00000038807	Tmem109 Links NCBI RGD Ensembl Show fit	transmembrane protein 109
chr1_+_174767960 Show fit	0.00	ENSRNOT00000013362	Wee1 Links NCBI RGD Ensembl Show fit	WEE1 G2 checkpoint kinase
chr6_+_76675418 Show fit	0.00	ENSRNOT00000076169 ENSRNOT00000010948 ENSRNOT00000082286	Brms1l Links NCBI RGD Ensembl Show fit Brms1l Links NCBI RGD Ensembl Show fit	breast cancer metastasis-suppressor 1-like breast cancer metastasis-suppressor 1-like
chr9_+_81783349 Show fit	0.00	ENSRNOT00000021548	Cnot9 Links NCBI RGD Ensembl Show fit	CCR4-NOT transcription complex subunit 9
chr6_+_36941596 Show fit	0.00	ENSRNOT00000083383	Smc6 Links NCBI RGD Ensembl Show fit	structural maintenance of chromosomes 6
chr1_+_228337767 Show fit	0.00	ENSRNOT00000066247	Patl1 Links NCBI RGD Ensembl Show fit	PAT1 homolog 1, processing body mRNA decay factor
chrX_+_54734385 Show fit	0.00	ENSRNOT00000005023	Nr0b1 Links NCBI RGD Ensembl Show fit	nuclear receptor subfamily 0, group B, member 1
chr17_-_44527801 Show fit	0.00	ENSRNOT00000089643	Hist1h2bk Links NCBI RGD Ensembl Show fit	histone cluster 1 H2B family member k

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0000454	snoRNA guided rRNA pseudouridine synthesis(GO:0000454)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0090661	box H/ACA telomerase RNP complex(GO:0090661)