GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
E2f8 Links NCBI RGD Ensembl	ENSRNOG00000022537	E2F transcription factor 8

Gene	Promoter	Pearson corr. coef.	P-value	Plot
E2f8	rn6_v1_chr1_-_104202591_104202591	-0.67	2.2e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr12_-_16395029 Show fit	0.10	ENSRNOT00000001700	Nudt1 Links NCBI RGD Ensembl Show fit	nudix hydrolase 1
chr11_-_83867203 Show fit	0.07	ENSRNOT00000002394	Chrd Links NCBI RGD Ensembl Show fit	chordin
chr1_+_221558093 Show fit	0.06	ENSRNOT00000077274	Majin Links NCBI RGD Ensembl Show fit	membrane anchored junction protein
chr19_+_14523554 Show fit	0.06	ENSRNOT00000084271 ENSRNOT00000064731	Mcm5 Links NCBI RGD Ensembl Show fit	minichromosome maintenance complex component 5
chr4_-_179904844 Show fit	0.05	ENSRNOT00000085386	Lmntd1 Links NCBI RGD Ensembl Show fit	lamin tail domain containing 1
chr14_+_110676090 Show fit	0.04	ENSRNOT00000029513	Fancl Links NCBI RGD Ensembl Show fit	Fanconi anemia, complementation group L
chr4_+_157554794 Show fit	0.04	ENSRNOT00000024116	Ing4 Links NCBI RGD Ensembl Show fit	inhibitor of growth family, member 4
chr10_-_89699836 Show fit	0.04	ENSRNOT00000084311	Etv4 Links NCBI RGD Ensembl Show fit	ets variant 4
chr8_-_39201588 Show fit	0.04	ENSRNOT00000011226	Stt3a Links NCBI RGD Ensembl Show fit	STT3A, catalytic subunit of the oligosaccharyltransferase complex
chr3_-_80052953 Show fit	0.04	ENSRNOT00000018998	Ddb2 Links NCBI RGD Ensembl Show fit	damage specific DNA binding protein 2
chr2_+_197682000 Show fit	0.03	ENSRNOT00000066821	Hormad1 Links NCBI RGD Ensembl Show fit	HORMA domain containing 1
chr1_+_185863043 Show fit	0.03	ENSRNOT00000079072	Sox6 Links NCBI RGD Ensembl Show fit	SRY box 6
chr2_-_28423762 Show fit	0.03	ENSRNOT00000022864	Btf3 Links NCBI RGD Ensembl Show fit	basic transcription factor 3
chr9_-_61975640 Show fit	0.03	ENSRNOT00000085744	Boll Links NCBI RGD Ensembl Show fit	boule homolog, RNA binding protein
chr1_-_32362359 Show fit	0.03	ENSRNOT00000079987	Slc6a3 Links NCBI RGD Ensembl Show fit	solute carrier family 6 member 3
chr9_-_64573660 Show fit	0.03	ENSRNOT00000021299	LOC108348134 Links NCBI RGD Ensembl Show fit	protein boule-like
chr11_-_57993548 Show fit	0.03	ENSRNOT00000002957	Nectin3 Links NCBI RGD Ensembl Show fit	nectin cell adhesion molecule 3
chr1_+_220009397 Show fit	0.03	ENSRNOT00000084410	Rbm4b Links NCBI RGD Ensembl Show fit	RNA binding motif protein 4B
chr5_+_154522119 Show fit	0.03	ENSRNOT00000072618	E2f2 Links NCBI RGD Ensembl Show fit	E2F transcription factor 2
chr3_-_150073721 Show fit	0.03	ENSRNOT00000022428	E2f1 Links NCBI RGD Ensembl Show fit	E2F transcription factor 1
chr8_+_108958046 Show fit	0.02	ENSRNOT00000079618 ENSRNOT00000066917	Stag1 Links NCBI RGD Ensembl Show fit	stromal antigen 1
chr4_+_62703779 Show fit	0.02	ENSRNOT00000014832	Nup205 Links NCBI RGD Ensembl Show fit	nucleoporin 205
chr10_+_90622992 Show fit	0.02	ENSRNOT00000032856	Meioc Links NCBI RGD Ensembl Show fit	meiosis specific with coiled-coil domain
chr3_+_2158995 Show fit	0.02	ENSRNOT00000010270	Zmynd19 Links NCBI RGD Ensembl Show fit	zinc finger, MYND-type containing 19
chr13_+_48679774 Show fit	0.02	ENSRNOT00000075674	Nucks1 Links NCBI RGD Ensembl Show fit	nuclear casein kinase and cyclin-dependent kinase substrate 1
chr14_+_82356916 Show fit	0.02	ENSRNOT00000040229	Slbp Links NCBI RGD Ensembl Show fit	stem-loop binding protein
chr7_+_54859104 Show fit	0.02	ENSRNOT00000087341	Caps2 Links NCBI RGD Ensembl Show fit	calcyphosine 2
chr4_+_179905116 Show fit	0.02	ENSRNOT00000052352	Tuba3a Links NCBI RGD Ensembl Show fit	tubulin, alpha 3A
chr1_+_257901985 Show fit	0.02	ENSRNOT00000073015	Hells Links NCBI RGD Ensembl Show fit	helicase, lymphoid specific
chr6_+_43884678 Show fit	0.02	ENSRNOT00000091551	Rrm2 Links NCBI RGD Ensembl Show fit	ribonucleotide reductase regulatory subunit M2
chr11_-_86890390 Show fit	0.02	ENSRNOT00000046183	Trmt2a Links NCBI RGD Ensembl Show fit	tRNA methyltransferase 2 homolog A
chr1_+_257766691 Show fit	0.02	ENSRNOT00000088148	Hells Links NCBI RGD Ensembl Show fit	helicase, lymphoid specific
chr10_+_93354003 Show fit	0.02	ENSRNOT00000008140	Mettl2b Links NCBI RGD Ensembl Show fit	methyltransferase like 2B
chr1_+_101687855 Show fit	0.02	ENSRNOT00000028546 ENSRNOT00000091597	Dbp Links NCBI RGD Ensembl Show fit	D-box binding PAR bZIP transcription factor
chr3_-_160891190 Show fit	0.02	ENSRNOT00000019386	Sdc4 Links NCBI RGD Ensembl Show fit	syndecan 4
chr10_-_56839437 Show fit	0.02	ENSRNOT00000090338	Bcl6b Links NCBI RGD Ensembl Show fit	B-cell CLL/lymphoma 6B
chr1_+_257614731 Show fit	0.02	ENSRNOT00000075680	LOC100911660 Links NCBI RGD Ensembl Show fit	lymphocyte-specific helicase-like
chr3_+_159421671 Show fit	0.02	ENSRNOT00000010343	Mybl2 Links NCBI RGD Ensembl Show fit	myeloblastosis oncogene-like 2
chr14_+_106393959 Show fit	0.01	ENSRNOT00000092168	Wdpcp Links NCBI RGD Ensembl Show fit	WD repeat containing planar cell polarity effector
chr3_-_151486693 Show fit	0.01	ENSRNOT00000073736 ENSRNOT00000071099	Gdf5 Links NCBI RGD Ensembl Show fit	growth differentiation factor 5
chr11_+_86890585 Show fit	0.01	ENSRNOT00000002579	Ranbp1 Links NCBI RGD Ensembl Show fit	RAN binding protein 1
chr6_+_95816749 Show fit	0.01	ENSRNOT00000008880	Six6 Links NCBI RGD Ensembl Show fit	SIX homeobox 6
chr2_+_186630278 Show fit	0.01	ENSRNOT00000021604	LOC365839 Links NCBI RGD Ensembl Show fit	similar to elongation protein 4 homolog
chr14_-_106393670 Show fit	0.01	ENSRNOT00000011429	Mdh1 Links NCBI RGD Ensembl Show fit	malate dehydrogenase 1
chr20_+_25990656 Show fit	0.01	ENSRNOT00000081254	Lrrtm3 Links NCBI RGD Ensembl Show fit	leucine rich repeat transmembrane neuronal 3
chr2_-_259898525 Show fit	0.01	ENSRNOT00000082253	St6galnac3 Links NCBI RGD Ensembl Show fit	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 3
chr7_+_54859326 Show fit	0.01	ENSRNOT00000039141	Caps2 Links NCBI RGD Ensembl Show fit	calcyphosine 2
chr11_-_89510871 Show fit	0.01	ENSRNOT00000035247	Prkdc Links NCBI RGD Ensembl Show fit	protein kinase, DNA activated, catalytic polypeptide
chr9_-_10757954 Show fit	0.01	ENSRNOT00000075265	Uhrf1 Links NCBI RGD Ensembl Show fit	ubiquitin-like with PHD and ring finger domains 1
chr2_+_24546536 Show fit	0.01	ENSRNOT00000014036	Otp Links NCBI RGD Ensembl Show fit	orthopedia homeobox
chr18_+_30036887 Show fit	0.01	ENSRNOT00000077824	Pcdha4 Links NCBI RGD Ensembl Show fit	protocadherin alpha 4
chr10_+_75335146 Show fit	0.01	ENSRNOT00000073005	Srsf1 Links NCBI RGD Ensembl Show fit	serine and arginine rich splicing factor 1
chr9_-_10757720 Show fit	0.01	ENSRNOT00000083848	Uhrf1 Links NCBI RGD Ensembl Show fit	ubiquitin-like with PHD and ring finger domains 1
chr19_-_44231157 Show fit	0.01	ENSRNOT00000046126	Kars Links NCBI RGD Ensembl Show fit	lysyl-tRNA synthetase
chr1_+_257615088 Show fit	0.01	ENSRNOT00000083183	LOC100911660 Links NCBI RGD Ensembl Show fit	lymphocyte-specific helicase-like
chrX_-_112159458 Show fit	0.01	ENSRNOT00000087403	Tex13b Links NCBI RGD Ensembl Show fit	testis expressed 13B
chr6_+_128973956 Show fit	0.01	ENSRNOT00000075399	Fam181a Links NCBI RGD Ensembl Show fit	family with sequence similarity 181, member A
chr8_-_55408464 Show fit	0.00	ENSRNOT00000066893	Sik2 Links NCBI RGD Ensembl Show fit	salt-inducible kinase 2
chr5_+_147185474 Show fit	0.00	ENSRNOT00000000134	Ak2 Links NCBI RGD Ensembl Show fit	adenylate kinase 2
chr14_+_44580216 Show fit	0.00	ENSRNOT00000088674 ENSRNOT00000003907	Rfc1 Links NCBI RGD Ensembl Show fit	replication factor C subunit 1
chr1_+_174767960 Show fit	0.00	ENSRNOT00000013362	Wee1 Links NCBI RGD Ensembl Show fit	WEE1 G2 checkpoint kinase
chr14_+_48726045 Show fit	0.00	ENSRNOT00000086646	Arap2 Links NCBI RGD Ensembl Show fit	ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2
chr5_+_147375350 Show fit	0.00	ENSRNOT00000010674	Yars Links NCBI RGD Ensembl Show fit	tyrosyl-tRNA synthetase
chr19_+_37652969 Show fit	0.00	ENSRNOT00000041970	Carmil2 Links NCBI RGD Ensembl Show fit	capping protein regulator and myosin 1 linker 2
chr18_+_56364620 Show fit	0.00	ENSRNOT00000068535 ENSRNOT00000086033	Pdgfrb Links NCBI RGD Ensembl Show fit	platelet derived growth factor receptor beta
chr2_-_231881939 Show fit	0.00	ENSRNOT00000074644	Larp7 Links NCBI RGD Ensembl Show fit	La ribonucleoprotein domain family, member 7
chr6_+_76675418 Show fit	0.00	ENSRNOT00000076169 ENSRNOT00000010948 ENSRNOT00000082286	Brms1l Links NCBI RGD Ensembl Show fit Brms1l Links NCBI RGD Ensembl Show fit	breast cancer metastasis-suppressor 1-like breast cancer metastasis-suppressor 1-like

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0046061	dATP catabolic process(GO:0046061)
0.0	0.1	GO:0021914	negative regulation of smoothened signaling pathway involved in ventral spinal cord patterning(GO:0021914)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0035539	8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity(GO:0008413) 8-oxo-7,8-dihydrodeoxyguanosine triphosphate pyrophosphatase activity(GO:0035539)