GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Egr4 Links NCBI RGD Ensembl	ENSRNOG00000015719	early growth response 4

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Egr4	rn6_v1_chr4_-_117296082_117296082	-0.79	1.1e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr10_+_86303727 Show fit	0.03	ENSRNOT00000037752	Ppp1r1b Links NCBI RGD Ensembl Show fit	protein phosphatase 1, regulatory (inhibitor) subunit 1B
chr3_+_111135021 Show fit	0.03	ENSRNOT00000018970	Dll4 Links NCBI RGD Ensembl Show fit	delta like canonical Notch ligand 4
chr1_+_221673590 Show fit	0.02	ENSRNOT00000038016	Cdc42bpg Links NCBI RGD Ensembl Show fit	CDC42 binding protein kinase gamma
chr3_-_176958880 Show fit	0.02	ENSRNOT00000078661	Zbtb46 Links NCBI RGD Ensembl Show fit	zinc finger and BTB domain containing 46
chr10_+_103396155 Show fit	0.02	ENSRNOT00000086924	Gprc5c Links NCBI RGD Ensembl Show fit	G protein-coupled receptor, class C, group 5, member C
chr1_-_103256823 Show fit	0.02	ENSRNOT00000018860	Ptpn5 Links NCBI RGD Ensembl Show fit	protein tyrosine phosphatase, non-receptor type 5
chr3_+_33641616 Show fit	0.02	ENSRNOT00000051953	Epc2 Links NCBI RGD Ensembl Show fit	enhancer of polycomb homolog 2
chr3_-_33075685 Show fit	0.01	ENSRNOT00000006937	Orc4 Links NCBI RGD Ensembl Show fit	origin recognition complex, subunit 4
chr14_+_11198896 Show fit	0.01	ENSRNOT00000079767	Hnrnpdl Links NCBI RGD Ensembl Show fit	heterogeneous nuclear ribonucleoprotein D-like
chr13_+_51958834 Show fit	0.01	ENSRNOT00000007833	Ptpn7 Links NCBI RGD Ensembl Show fit	protein tyrosine phosphatase, non-receptor type 7
chrX_-_15587419 Show fit	0.01	ENSRNOT00000012829	Tfe3 Links NCBI RGD Ensembl Show fit	transcription factor binding to IGHM enhancer 3
chr10_+_13915214 Show fit	0.01	ENSRNOT00000015092	Pkd1 Links NCBI RGD Ensembl Show fit	polycystin 1, transient receptor potential channel interacting
chr10_-_94979259 Show fit	0.01	ENSRNOT00000018394	Polg2 Links NCBI RGD Ensembl Show fit	DNA polymerase gamma 2, accessory subunit
chr11_-_55044581 Show fit	0.01	ENSRNOT00000046330	Morc1 Links NCBI RGD Ensembl Show fit	MORC family CW-type zinc finger 1
chr10_-_74298599 Show fit	0.01	ENSRNOT00000007379	Ypel2 Links NCBI RGD Ensembl Show fit	yippee-like 2
chr19_+_16415636 Show fit	0.01	ENSRNOT00000089975	Irx5 Links NCBI RGD Ensembl Show fit	iroquois homeobox 5
chr10_+_56610051 Show fit	0.01	ENSRNOT00000024348	Dvl2 Links NCBI RGD Ensembl Show fit	dishevelled segment polarity protein 2
chr10_-_105552986 Show fit	0.01	ENSRNOT00000014699	Ube2o Links NCBI RGD Ensembl Show fit	ubiquitin-conjugating enzyme E2O
chr7_-_70198655 Show fit	0.01	ENSRNOT00000074743	Atp23 Links NCBI RGD Ensembl Show fit	ATP23 metallopeptidase and ATP synthase assembly factor homolog
chr8_-_110813000 Show fit	0.01	ENSRNOT00000010634	Ephb1 Links NCBI RGD Ensembl Show fit	Eph receptor B1
chr18_-_56728968 Show fit	0.01	ENSRNOT00000023661	Ppargc1b Links NCBI RGD Ensembl Show fit	PPARG coactivator 1 beta
chr7_+_2643288 Show fit	0.00	ENSRNOT00000047241	Timeless Links NCBI RGD Ensembl Show fit	timeless circadian clock
chr7_+_63922879 Show fit	0.00	ENSRNOT00000043581	RGD1565498 Links NCBI RGD Ensembl Show fit	similar to Hypothetical protein LOC270802
chr3_-_57192125 Show fit	0.00	ENSRNOT00000032528	RGD1565767 Links NCBI RGD Ensembl Show fit	similar to ribosomal protein L15
chr4_-_55527092 Show fit	0.00	ENSRNOT00000087407 ENSRNOT00000010223	Zfp800 Links NCBI RGD Ensembl Show fit	zinc finger protein 800
chr1_-_90176105 Show fit	0.00	ENSRNOT00000076419	RGD1308428 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA 4931406P16
chr8_-_116469915 Show fit	0.00	ENSRNOT00000024193	Sema3f Links NCBI RGD Ensembl Show fit	semaphorin 3F
chr10_-_27179254 Show fit	0.00	ENSRNOT00000004619	Gabrg2 Links NCBI RGD Ensembl Show fit	gamma-aminobutyric acid type A receptor gamma 2 subunit
chr13_+_101181994 Show fit	0.00	ENSRNOT00000052407	Susd4 Links NCBI RGD Ensembl Show fit	sushi domain containing 4
chr8_-_71533459 Show fit	0.00	ENSRNOT00000085745	Trip4 Links NCBI RGD Ensembl Show fit	thyroid hormone receptor interactor 4
chr12_+_48481750 Show fit	0.00	ENSRNOT00000000886	Coro1c Links NCBI RGD Ensembl Show fit	coronin 1C
chrX_-_114658931 Show fit	0.00	ENSRNOT00000006008	Chrdl1 Links NCBI RGD Ensembl Show fit	chordin-like 1
chr4_+_122282279 Show fit	0.00	ENSRNOT00000038244	Zxdc Links NCBI RGD Ensembl Show fit	ZXD family zinc finger C
chr6_+_93281408 Show fit	0.00	ENSRNOT00000009610	Frmd6 Links NCBI RGD Ensembl Show fit	FERM domain containing 6
chrX_-_73360204 Show fit	0.00	ENSRNOT00000091278	LOC100360296 Links NCBI RGD Ensembl Show fit	BRCA2-interacting protein-like
chr5_-_136112344 Show fit	0.00	ENSRNOT00000050195	RGD1563714 Links NCBI RGD Ensembl Show fit	RGD1563714
chr3_-_91839009 Show fit	0.00	ENSRNOT00000083703	Ldlrad3 Links NCBI RGD Ensembl Show fit	low density lipoprotein receptor class A domain containing 3
chr3_+_151553578 Show fit	0.00	ENSRNOT00000045484	Ergic3 Links NCBI RGD Ensembl Show fit	ERGIC and golgi 3
chrX_+_120859968 Show fit	0.00	ENSRNOT00000085185	Wdr44 Links NCBI RGD Ensembl Show fit	WD repeat domain 44
chr1_-_220644636 Show fit	0.00	ENSRNOT00000027632	Pacs1 Links NCBI RGD Ensembl Show fit	phosphofurin acidic cluster sorting protein 1
chr4_-_152835182 Show fit	0.00	ENSRNOT00000036721	B4galnt3 Links NCBI RGD Ensembl Show fit	beta-1,4-N-acetyl-galactosaminyl transferase 3
chr17_+_26808330 Show fit	0.00	ENSRNOT00000022108	Bloc1s5 Links NCBI RGD Ensembl Show fit	biogenesis of lysosomal organelles complex 1 subunit 5
chr15_+_86153628 Show fit	0.00	ENSRNOT00000012842	Uchl3 Links NCBI RGD Ensembl Show fit	ubiquitin C-terminal hydrolase L3
chrX_+_120860178 Show fit	0.00	ENSRNOT00000088661	Wdr44 Links NCBI RGD Ensembl Show fit	WD repeat domain 44
chr8_+_122743189 Show fit	0.00	ENSRNOT00000014532	Dync1li1 Links NCBI RGD Ensembl Show fit	dynein cytoplasmic 1 light intermediate chain 1
chr3_+_116899878 Show fit	0.00	ENSRNOT00000090802 ENSRNOT00000066101	Sema6d Links NCBI RGD Ensembl Show fit	semaphorin 6D
chr10_+_88536626 Show fit	0.00	ENSRNOT00000077568 ENSRNOT00000024543	Nkiras2 Links NCBI RGD Ensembl Show fit	NFKB inhibitor interacting Ras-like 2
chr7_+_12179203 Show fit	0.00	ENSRNOT00000049170	Mbd3 Links NCBI RGD Ensembl Show fit	methyl-CpG binding domain protein 3
chr3_+_11554457 Show fit	0.00	ENSRNOT00000073087	Fam102a Links NCBI RGD Ensembl Show fit	family with sequence similarity 102, member A
chr20_-_10407554 Show fit	0.00	ENSRNOT00000074081	U2af1 Links NCBI RGD Ensembl Show fit	U2 small nuclear RNA auxiliary factor 1
chr10_-_84639105 Show fit	0.00	ENSRNOT00000011474 ENSRNOT00000081348 ENSRNOT00000089146	Snx11 Links NCBI RGD Ensembl Show fit	sorting nexin 11
chrX_+_136466779 Show fit	0.00	ENSRNOT00000093268 ENSRNOT00000068717	Arhgap36 Links NCBI RGD Ensembl Show fit	Rho GTPase activating protein 36
chrX_+_10964067 Show fit	0.00	ENSRNOT00000093181 ENSRNOT00000066480	Med14 Links NCBI RGD Ensembl Show fit	mediator complex subunit 14

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Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0031752	D5 dopamine receptor binding(GO:0031752)