GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Ep300 Links NCBI RGD Ensembl	ENSRNOG00000000190	E1A binding protein p300

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Ep300	rn6_v1_chr7_+_122818975_122818975	0.32	6.1e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chrX_+_144807392 Show fit	0.07	ENSRNOT00000004529	NEWGENE_1565644 Links NCBI RGD Ensembl Show fit	leucine zipper down-regulated in cancer 1
chr7_-_12634641 Show fit	0.05	ENSRNOT00000093132	Cfd Links NCBI RGD Ensembl Show fit	complement factor D
chr15_-_108898703 Show fit	0.05	ENSRNOT00000067577	Zic5 Links NCBI RGD Ensembl Show fit	Zic family member 5
chr17_+_11683862 Show fit	0.04	ENSRNOT00000024766	Msx2 Links NCBI RGD Ensembl Show fit	msh homeobox 2
chr8_+_59769994 Show fit	0.04	ENSRNOT00000020309	Fbxo22 Links NCBI RGD Ensembl Show fit	F-box protein 22
chr9_-_81566642 Show fit	0.04	ENSRNOT00000080345	Aamp Links NCBI RGD Ensembl Show fit	angio-associated, migratory cell protein
chr15_+_33333420 Show fit	0.03	ENSRNOT00000049927	RGD1308430 Links NCBI RGD Ensembl Show fit	similar to 1700123O20Rik protein
chr20_+_26755911 Show fit	0.03	ENSRNOT00000083017	Herc4 Links NCBI RGD Ensembl Show fit	HECT and RLD domain containing E3 ubiquitin protein ligase 4
chr13_+_80125391 Show fit	0.03	ENSRNOT00000044190	Mir199a2 Links NCBI RGD Ensembl Show fit	microRNA 199a-2
chr8_+_44047592 Show fit	0.03	ENSRNOT00000085084	Zfp202 Links NCBI RGD Ensembl Show fit	zinc finger protein 202
chr16_-_81243221 Show fit	0.02	ENSRNOT00000076763	Gas6 Links NCBI RGD Ensembl Show fit	growth arrest specific 6
chr7_-_73450262 Show fit	0.02	ENSRNOT00000006943	Nipal2 Links NCBI RGD Ensembl Show fit	NIPA-like domain containing 2
chr1_-_234670113 Show fit	0.02	ENSRNOT00000017133	LOC499331 Links NCBI RGD Ensembl Show fit	similar to hypothetical protein D030056L22
chr4_+_181286455 Show fit	0.02	ENSRNOT00000083633	Ppfibp1 Links NCBI RGD Ensembl Show fit	PPFIA binding protein 1
chr1_+_266844480 Show fit	0.02	ENSRNOT00000027482	Taf5 Links NCBI RGD Ensembl Show fit	TATA-box binding protein associated factor 5
chr18_-_1390190 Show fit	0.02	ENSRNOT00000061777	Rock1 Links NCBI RGD Ensembl Show fit	Rho-associated coiled-coil containing protein kinase 1
chr5_-_76756140 Show fit	0.02	ENSRNOT00000022107 ENSRNOT00000089251	Ptbp3 Links NCBI RGD Ensembl Show fit	polypyrimidine tract binding protein 3
chrX_+_43497763 Show fit	0.02	ENSRNOT00000005014	Prdx4 Links NCBI RGD Ensembl Show fit	peroxiredoxin 4
chr18_-_1389929 Show fit	0.02	ENSRNOT00000051362	Rock1 Links NCBI RGD Ensembl Show fit	Rho-associated coiled-coil containing protein kinase 1
chr1_-_199823386 Show fit	0.02	ENSRNOT00000027375	Rgs10 Links NCBI RGD Ensembl Show fit	regulator of G-protein signaling 10
chr1_+_221756286 Show fit	0.02	ENSRNOT00000028636	Pygm Links NCBI RGD Ensembl Show fit	glycogen phosphorylase, muscle associated
chr18_+_16544508 Show fit	0.02	ENSRNOT00000020601	Elp2 Links NCBI RGD Ensembl Show fit	elongator acetyltransferase complex subunit 2
chr3_+_112916217 Show fit	0.02	ENSRNOT00000030065	Tmem62 Links NCBI RGD Ensembl Show fit	transmembrane protein 62
chr6_+_24064738 Show fit	0.02	ENSRNOT00000035362	Ypel5 Links NCBI RGD Ensembl Show fit	yippee-like 5
chr2_-_154542919 Show fit	0.02	ENSRNOT00000076880	Slc33a1 Links NCBI RGD Ensembl Show fit	solute carrier family 33 member 1
chr2_+_188253220 Show fit	0.02	ENSRNOT00000027629	Ash1l Links NCBI RGD Ensembl Show fit	ASH1 like histone lysine methyltransferase
chr13_-_73704480 Show fit	0.02	ENSRNOT00000005296	Tor1aip1 Links NCBI RGD Ensembl Show fit	torsin 1A interacting protein 1
chr4_-_158705885 Show fit	0.02	ENSRNOT00000087115 ENSRNOT00000026685	Ntf3 Links NCBI RGD Ensembl Show fit	neurotrophin 3
chr11_-_86890390 Show fit	0.02	ENSRNOT00000046183	Trmt2a Links NCBI RGD Ensembl Show fit	tRNA methyltransferase 2 homolog A
chr20_+_2044200 Show fit	0.02	ENSRNOT00000092626	RT1-M4 Links NCBI RGD Ensembl Show fit	RT1 class Ib, locus M4
chr2_-_154542557 Show fit	0.02	ENSRNOT00000013392	Slc33a1 Links NCBI RGD Ensembl Show fit	solute carrier family 33 member 1
chr2_-_88414012 Show fit	0.01	ENSRNOT00000014762	Lrrcc1 Links NCBI RGD Ensembl Show fit	leucine rich repeat and coiled-coil centrosomal protein 1
chr1_-_167347662 Show fit	0.01	ENSRNOT00000027641 ENSRNOT00000076592	Rhog Links NCBI RGD Ensembl Show fit	ras homolog family member G
chr6_-_78549669 Show fit	0.01	ENSRNOT00000009940	Foxa1 Links NCBI RGD Ensembl Show fit	forkhead box A1
chr16_+_47665816 Show fit	0.01	ENSRNOT00000030519	Cdkn2aip Links NCBI RGD Ensembl Show fit	CDKN2A interacting protein
chr4_+_176565694 Show fit	0.01	ENSRNOT00000016794	Pyroxd1 Links NCBI RGD Ensembl Show fit	pyridine nucleotide-disulphide oxidoreductase domain 1
chr2_+_230901126 Show fit	0.01	ENSRNOT00000016026 ENSRNOT00000015564 ENSRNOT00000068198	Camk2d Links NCBI RGD Ensembl Show fit	calcium/calmodulin-dependent protein kinase II delta
chr10_-_105259795 Show fit	0.01	ENSRNOT00000013281	LOC100911734 Links NCBI RGD Ensembl Show fit	exocyst complex component 7-like
chr4_-_145487426 Show fit	0.01	ENSRNOT00000013488	Emc3 Links NCBI RGD Ensembl Show fit	ER membrane protein complex subunit 3
chr3_+_119484677 Show fit	0.01	ENSRNOT00000037390	Ap4e1 Links NCBI RGD Ensembl Show fit	adaptor-related protein complex 4, epsilon 1 subunit
chr13_+_89774764 Show fit	0.01	ENSRNOT00000005619	Arhgap30 Links NCBI RGD Ensembl Show fit	Rho GTPase activating protein 30
chr5_-_150520884 Show fit	0.01	ENSRNOT00000085482	Rcc1 Links NCBI RGD Ensembl Show fit	regulator of chromosome condensation 1
chr17_+_90802393 Show fit	0.01	ENSRNOT00000003535	Edaradd Links NCBI RGD Ensembl Show fit	EDAR-associated death domain
chr5_-_79899054 Show fit	0.01	ENSRNOT00000074379	AC229945.1 Links NCBI RGD Ensembl Show fit
chr5_+_133864798 Show fit	0.01	ENSRNOT00000091977	Tal1 Links NCBI RGD Ensembl Show fit	TAL bHLH transcription factor 1, erythroid differentiation factor
chr7_+_123222161 Show fit	0.01	ENSRNOT00000007357	RGD1306782 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA 1700029P11
chr5_+_126783061 Show fit	0.01	ENSRNOT00000013224	Tmem59 Links NCBI RGD Ensembl Show fit	transmembrane protein 59
chr7_-_70842405 Show fit	0.01	ENSRNOT00000047449	Nxph4 Links NCBI RGD Ensembl Show fit	neurexophilin 4
chr2_-_30735514 Show fit	0.01	ENSRNOT00000025026	Cdk7 Links NCBI RGD Ensembl Show fit	cyclin-dependent kinase 7
chr5_+_140870140 Show fit	0.01	ENSRNOT00000074347	Hpcal4 Links NCBI RGD Ensembl Show fit	hippocalcin-like 4
chr1_+_184301493 Show fit	0.01	ENSRNOT00000078096	Insc Links NCBI RGD Ensembl Show fit	inscuteable homolog (Drosophila)
chr14_+_83560541 Show fit	0.01	ENSRNOT00000057738 ENSRNOT00000085228	Pik3ip1 Links NCBI RGD Ensembl Show fit	phosphoinositide-3-kinase interacting protein 1
chr7_-_28040510 Show fit	0.01	ENSRNOT00000005674	Ascl1 Links NCBI RGD Ensembl Show fit	achaete-scute family bHLH transcription factor 1
chr20_+_30915213 Show fit	0.01	ENSRNOT00000000681	Prf1 Links NCBI RGD Ensembl Show fit	perforin 1
chr5_+_133865331 Show fit	0.01	ENSRNOT00000035409	Tal1 Links NCBI RGD Ensembl Show fit	TAL bHLH transcription factor 1, erythroid differentiation factor
chr3_+_8450275 Show fit	0.01	ENSRNOT00000020073	Odf2 Links NCBI RGD Ensembl Show fit	outer dense fiber of sperm tails 2
chr10_+_86303727 Show fit	0.01	ENSRNOT00000037752	Ppp1r1b Links NCBI RGD Ensembl Show fit	protein phosphatase 1, regulatory (inhibitor) subunit 1B
chr1_-_261229046 Show fit	0.01	ENSRNOT00000075531	Mms19 Links NCBI RGD Ensembl Show fit	MMS19 homolog, cytosolic iron-sulfur assembly component
chr3_+_9366053 Show fit	0.01	ENSRNOT00000073999	Fibcd1l1 Links NCBI RGD Ensembl Show fit	fibrinogen C domain containing 1-like 1
chr14_+_91783514 Show fit	0.01	ENSRNOT00000080753	Ikzf1 Links NCBI RGD Ensembl Show fit	IKAROS family zinc finger 1
chr15_+_33069382 Show fit	0.01	ENSRNOT00000060193	Mrpl52 Links NCBI RGD Ensembl Show fit	mitochondrial ribosomal protein L52
chr2_+_112868707 Show fit	0.01	ENSRNOT00000017805	Nceh1 Links NCBI RGD Ensembl Show fit	neutral cholesterol ester hydrolase 1
chr2_+_187740531 Show fit	0.01	ENSRNOT00000092653	Paqr6 Links NCBI RGD Ensembl Show fit	progestin and adipoQ receptor family member 6
chr7_-_14302552 Show fit	0.01	ENSRNOT00000091368	Brd4 Links NCBI RGD Ensembl Show fit	bromodomain containing 4
chr6_+_26836216 Show fit	0.01	ENSRNOT00000077903 ENSRNOT00000011373	Ost4 Links NCBI RGD Ensembl Show fit	oligosaccharyltransferase complex subunit 4, non-catalytic
chr9_+_10216205 Show fit	0.01	ENSRNOT00000084312 ENSRNOT00000073025	Rfx2 Links NCBI RGD Ensembl Show fit	regulatory factor X2
chr11_+_88047832 Show fit	0.01	ENSRNOT00000046159	Ube2l3 Links NCBI RGD Ensembl Show fit	ubiquitin-conjugating enzyme E2L 3
chr20_-_12128747 Show fit	0.01	ENSRNOT00000001644	Pofut2 Links NCBI RGD Ensembl Show fit	protein O-fucosyltransferase 2
chr5_+_61474000 Show fit	0.01	ENSRNOT00000013930	Ccdc180 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 180
chr2_-_188252725 Show fit	0.01	ENSRNOT00000027608	Dap3 Links NCBI RGD Ensembl Show fit	death associated protein 3
chr5_-_166430254 Show fit	0.01	ENSRNOT00000048914	Nmnat1 Links NCBI RGD Ensembl Show fit	nicotinamide nucleotide adenylyltransferase 1
chr2_+_187282000 Show fit	0.01	ENSRNOT00000065211	Hdgf Links NCBI RGD Ensembl Show fit	hepatoma-derived growth factor
chr2_-_188745144 Show fit	0.01	ENSRNOT00000055533	Cks1b Links NCBI RGD Ensembl Show fit	CDC28 protein kinase regulatory subunit 1B
chr10_-_62648844 Show fit	0.01	ENSRNOT00000034282	Abhd15 Links NCBI RGD Ensembl Show fit	abhydrolase domain containing 15
chr1_+_173252058 Show fit	0.01	ENSRNOT00000073421	LOC499229 Links NCBI RGD Ensembl Show fit	similar to very large inducible GTPase 1 isoform A
chr7_-_59514939 Show fit	0.01	ENSRNOT00000085579	Kcnmb4 Links NCBI RGD Ensembl Show fit	potassium calcium-activated channel subfamily M regulatory beta subunit 4
chr4_+_6559545 Show fit	0.01	ENSRNOT00000067183	Prkag2 Links NCBI RGD Ensembl Show fit	protein kinase AMP-activated non-catalytic subunit gamma 2
chr3_-_5976244 Show fit	0.01	ENSRNOT00000009893	Vav2 Links NCBI RGD Ensembl Show fit	vav guanine nucleotide exchange factor 2
chr18_+_14756684 Show fit	0.01	ENSRNOT00000076085 ENSRNOT00000076129	Mapre2 Links NCBI RGD Ensembl Show fit	microtubule-associated protein, RP/EB family, member 2
chr5_-_151536518 Show fit	0.01	ENSRNOT00000011311	Wdtc1 Links NCBI RGD Ensembl Show fit	WD and tetratricopeptide repeats 1
chr10_+_91217079 Show fit	0.01	ENSRNOT00000004218	Hexim2 Links NCBI RGD Ensembl Show fit	hexamethylene bis-acetamide inducible 2
chr5_+_151741817 Show fit	0.01	ENSRNOT00000081318	Kdf1 Links NCBI RGD Ensembl Show fit	keratinocyte differentiation factor 1
chr10_+_39109522 Show fit	0.01	ENSRNOT00000010968	Irf1 Links NCBI RGD Ensembl Show fit	interferon regulatory factor 1
chr5_+_82587420 Show fit	0.01	ENSRNOT00000014020	Tlr4 Links NCBI RGD Ensembl Show fit	toll-like receptor 4
chr8_+_71786310 Show fit	0.01	ENSRNOT00000022999	Fam96a Links NCBI RGD Ensembl Show fit	family with sequence similarity 96, member A
chr7_-_130170609 Show fit	0.01	ENSRNOT00000088030	Dennd6b Links NCBI RGD Ensembl Show fit	DENN domain containing 6B
chr6_-_33507542 Show fit	0.01	ENSRNOT00000007928	Gdf7 Links NCBI RGD Ensembl Show fit	growth differentiation factor 7
chr4_-_115354795 Show fit	0.01	ENSRNOT00000017691	Cd207 Links NCBI RGD Ensembl Show fit	CD207 molecule
chr17_+_36335804 Show fit	0.01	ENSRNOT00000091334	E2f3 Links NCBI RGD Ensembl Show fit	E2F transcription factor 3
chr9_-_16795887 Show fit	0.01	ENSRNOT00000071609	Cd79al Links NCBI RGD Ensembl Show fit	Cd79a molecule-like
chr20_-_48881119 Show fit	0.01	ENSRNOT00000018892	Qrsl1 Links NCBI RGD Ensembl Show fit	glutaminyl-tRNA synthase (glutamine-hydrolyzing)-like 1
chr12_+_36694960 Show fit	0.00	ENSRNOT00000064276 ENSRNOT00000001299	Scarb1 Links NCBI RGD Ensembl Show fit	scavenger receptor class B, member 1
chr1_+_101152734 Show fit	0.00	ENSRNOT00000028022	Pih1d1 Links NCBI RGD Ensembl Show fit	PIH1 domain containing 1
chr5_-_171459488 Show fit	0.00	ENSRNOT00000075423 ENSRNOT00000080686	Tprg1l Links NCBI RGD Ensembl Show fit	tumor protein p63 regulated 1-like
chr5_+_104941066 Show fit	0.00	ENSRNOT00000009225	Rraga Links NCBI RGD Ensembl Show fit	Ras-related GTP binding A
chr16_-_7406951 Show fit	0.00	ENSRNOT00000066508	Dnah1 Links NCBI RGD Ensembl Show fit	dynein, axonemal, heavy chain 1
chr3_+_8450612 Show fit	0.00	ENSRNOT00000040457	Odf2 Links NCBI RGD Ensembl Show fit	outer dense fiber of sperm tails 2
chr5_-_137238354 Show fit	0.00	ENSRNOT00000039235	Szt2 Links NCBI RGD Ensembl Show fit	seizure threshold 2 homolog (mouse)
chr20_+_20378861 Show fit	0.00	ENSRNOT00000091044	Ank3 Links NCBI RGD Ensembl Show fit	ankyrin 3
chr20_+_28815039 Show fit	0.00	ENSRNOT00000075800	Sowahc Links NCBI RGD Ensembl Show fit	sosondowah ankyrin repeat domain family member C
chr2_+_242634399 Show fit	0.00	ENSRNOT00000035700	Emcn Links NCBI RGD Ensembl Show fit	endomucin
chr16_-_21347968 Show fit	0.00	ENSRNOT00000068554	Lpar2 Links NCBI RGD Ensembl Show fit	lysophosphatidic acid receptor 2
chr4_+_71790701 Show fit	0.00	ENSRNOT00000085902	Tas2r143 Links NCBI RGD Ensembl Show fit	taste receptor, type 2, member 143
chr3_+_170443855 Show fit	0.00	ENSRNOT00000006884	Rtfdc1 Links NCBI RGD Ensembl Show fit	replication termination factor 2 domain containing 1
chr1_-_219682287 Show fit	0.00	ENSRNOT00000026092	Rhod Links NCBI RGD Ensembl Show fit	ras homolog family member D
chr19_+_24044103 Show fit	0.00	ENSRNOT00000004621	Rnf150 Links NCBI RGD Ensembl Show fit	ring finger protein 150
chr9_-_99818262 Show fit	0.00	ENSRNOT00000056600	Cops9 Links NCBI RGD Ensembl Show fit	COP9 signalosome subunit 9
chr14_-_85951891 Show fit	0.00	ENSRNOT00000016207 ENSRNOT00000080848	Mrps24 Links NCBI RGD Ensembl Show fit	mitochondrial ribosomal protein S24
chr2_+_188745503 Show fit	0.00	ENSRNOT00000056652	Shc1 Links NCBI RGD Ensembl Show fit	SHC adaptor protein 1
chr1_+_174655939 Show fit	0.00	ENSRNOT00000014002	Ipo7 Links NCBI RGD Ensembl Show fit	importin 7
chr9_+_54558202 Show fit	0.00	ENSRNOT00000068433	Myo1b Links NCBI RGD Ensembl Show fit	myosin Ib
chr6_-_64170122 Show fit	0.00	ENSRNOT00000093248 ENSRNOT00000005363	Dnajb9 Links NCBI RGD Ensembl Show fit	DnaJ heat shock protein family (Hsp40) member B9
chr17_+_54181419 Show fit	0.00	ENSRNOT00000023861	Kif5b Links NCBI RGD Ensembl Show fit	kinesin family member 5B
chr4_-_56897310 Show fit	0.00	ENSRNOT00000043902 ENSRNOT00000090038	Tnpo3 Links NCBI RGD Ensembl Show fit	transportin 3
chr1_+_264756499 Show fit	0.00	ENSRNOT00000031018	Peo1 Links NCBI RGD Ensembl Show fit	progressive external ophthalmoplegia 1
chr11_+_86890585 Show fit	0.00	ENSRNOT00000002579	Ranbp1 Links NCBI RGD Ensembl Show fit	RAN binding protein 1
chr10_+_65507364 Show fit	0.00	ENSRNOT00000016297	Sdf2 Links NCBI RGD Ensembl Show fit	stromal cell derived factor 2
chr2_+_198823366 Show fit	0.00	ENSRNOT00000083769 ENSRNOT00000028814	Pias3 Links NCBI RGD Ensembl Show fit	protein inhibitor of activated STAT, 3
chr4_-_7281223 Show fit	0.00	ENSRNOT00000019666	Slc4a2 Links NCBI RGD Ensembl Show fit	solute carrier family 4 member 2
chr10_-_105182834 Show fit	0.00	ENSRNOT00000068050	Exoc7 Links NCBI RGD Ensembl Show fit	exocyst complex component 7
chr7_+_116997020 Show fit	0.00	ENSRNOT00000078368	Zfp707l1 Links NCBI RGD Ensembl Show fit	zinc finger protein 707-like 1
chr7_-_117070936 Show fit	0.00	ENSRNOT00000048446	Fam83h Links NCBI RGD Ensembl Show fit	family with sequence similarity 83, member H
chr3_+_9998458 Show fit	0.00	ENSRNOT00000012927	Fibcd1 Links NCBI RGD Ensembl Show fit	fibrinogen C domain containing 1
chr20_+_2043719 Show fit	0.00	ENSRNOT00000030174	RT1-M4 Links NCBI RGD Ensembl Show fit	RT1 class Ib, locus M4
chr1_-_200163106 Show fit	0.00	ENSRNOT00000027644	Mcmbp Links NCBI RGD Ensembl Show fit	minichromosome maintenance complex binding protein
chr7_+_83564563 Show fit	0.00	ENSRNOT00000005705	Ebag9 Links NCBI RGD Ensembl Show fit	estrogen receptor binding site associated, antigen, 9
chr5_+_166430400 Show fit	0.00	ENSRNOT00000021822	Lzic Links NCBI RGD Ensembl Show fit	leucine zipper and CTNNBIP1 domain containing
chrX_+_140878216 Show fit	0.00	ENSRNOT00000075840 ENSRNOT00000077026	Zic3 Links NCBI RGD Ensembl Show fit	Zic family member 3
chr16_+_56248331 Show fit	0.00	ENSRNOT00000085300	Tusc3 Links NCBI RGD Ensembl Show fit	tumor suppressor candidate 3
chr14_-_34115273 Show fit	0.00	ENSRNOT00000032156	Cep135 Links NCBI RGD Ensembl Show fit	centrosomal protein 135

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0035880	embryonic nail plate morphogenesis(GO:0035880)