GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Esrrg Links NCBI RGD Ensembl	ENSRNOG00000002593	estrogen-related receptor gamma

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Esrrg	rn6_v1_chr13_+_106463368_106463368	0.70	1.9e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr3_+_123106694 Show fit	0.27	ENSRNOT00000028829	Oxt Links NCBI RGD Ensembl Show fit	oxytocin/neurophysin 1 prepropeptide
chr10_-_71849293 Show fit	0.25	ENSRNOT00000003799	Lhx1 Links NCBI RGD Ensembl Show fit	LIM homeobox 1
chrX_-_40086870 Show fit	0.17	ENSRNOT00000010027	Smpx Links NCBI RGD Ensembl Show fit	small muscle protein, X-linked
chr3_+_147609095 Show fit	0.11	ENSRNOT00000041456	Srxn1 Links NCBI RGD Ensembl Show fit	sulfiredoxin 1
chr4_+_51614676 Show fit	0.10	ENSRNOT00000060494	Asb15 Links NCBI RGD Ensembl Show fit	ankyrin repeat and SOCS box containing 15
chr8_+_59900651 Show fit	0.10	ENSRNOT00000020410	Tmem266 Links NCBI RGD Ensembl Show fit	transmembrane protein 266
chr4_-_130659697 Show fit	0.10	ENSRNOT00000072374	LOC100363436 Links NCBI RGD Ensembl Show fit	rCG56280-like
chr12_-_30566032 Show fit	0.07	ENSRNOT00000093378	Gbas Links NCBI RGD Ensembl Show fit	glioblastoma amplified sequence
chr5_-_75319765 Show fit	0.07	ENSRNOT00000085698	Svep1 Links NCBI RGD Ensembl Show fit	sushi, von Willebrand factor type A, EGF and pentraxin domain containing 1
chr7_+_129860327 Show fit	0.06	ENSRNOT00000043461	Pim3 Links NCBI RGD Ensembl Show fit	Pim-3 proto-oncogene, serine/threonine kinase
chr5_-_56576676 Show fit	0.06	ENSRNOT00000029712	Ndufb6 Links NCBI RGD Ensembl Show fit	NADH:ubiquinone oxidoreductase subunit B6
chr8_+_116771982 Show fit	0.05	ENSRNOT00000083240	AC128059.3 Links NCBI RGD Ensembl Show fit
chr9_-_92291220 Show fit	0.05	ENSRNOT00000093357	Dner Links NCBI RGD Ensembl Show fit	delta/notch-like EGF repeat containing
chr8_+_12160067 Show fit	0.05	ENSRNOT00000036338	Maml2 Links NCBI RGD Ensembl Show fit	mastermind-like transcriptional coactivator 2
chr8_-_130429132 Show fit	0.05	ENSRNOT00000026261	Hhatl Links NCBI RGD Ensembl Show fit	hedgehog acyltransferase-like
chr1_+_261158261 Show fit	0.05	ENSRNOT00000071965	Pgam1 Links NCBI RGD Ensembl Show fit	phosphoglycerate mutase 1
chr20_-_5618254 Show fit	0.04	ENSRNOT00000092326 ENSRNOT00000000576	Bak1 Links NCBI RGD Ensembl Show fit	BCL2-antagonist/killer 1
chr5_+_50381244 Show fit	0.04	ENSRNOT00000012385	Cga Links NCBI RGD Ensembl Show fit	glycoprotein hormones, alpha polypeptide
chr8_-_68312909 Show fit	0.03	ENSRNOT00000066106	RGD1309779 Links NCBI RGD Ensembl Show fit	similar to ENSANGP00000021391
chr3_+_113318563 Show fit	0.03	ENSRNOT00000089230	Ckmt1 Links NCBI RGD Ensembl Show fit	creatine kinase, mitochondrial 1
chr1_+_226252226 Show fit	0.03	ENSRNOT00000039369	AABR07006258.1 Links NCBI RGD Ensembl Show fit
chr6_-_107678156 Show fit	0.03	ENSRNOT00000014158	Elmsan1 Links NCBI RGD Ensembl Show fit	ELM2 and Myb/SANT domain containing 1
chr8_+_106317124 Show fit	0.03	ENSRNOT00000018411	Nmnat3 Links NCBI RGD Ensembl Show fit	nicotinamide nucleotide adenylyltransferase 3
chr12_+_47024442 Show fit	0.03	ENSRNOT00000001545	Cox6a1 Links NCBI RGD Ensembl Show fit	cytochrome c oxidase subunit 6A1
chr3_+_151126591 Show fit	0.03	ENSRNOT00000025859	Myh7b Links NCBI RGD Ensembl Show fit	myosin heavy chain 7B
chr3_-_60813869 Show fit	0.03	ENSRNOT00000058234	Atp5g3 Links NCBI RGD Ensembl Show fit	ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C3 (subunit 9)
chr2_+_212257225 Show fit	0.03	ENSRNOT00000077883	Vav3 Links NCBI RGD Ensembl Show fit	vav guanine nucleotide exchange factor 3
chr3_+_113319456 Show fit	0.03	ENSRNOT00000051354	Ckmt1 Links NCBI RGD Ensembl Show fit	creatine kinase, mitochondrial 1
chr2_+_38230757 Show fit	0.03	ENSRNOT00000048598	RGD1564606 Links NCBI RGD Ensembl Show fit	similar to 60S ribosomal protein L23a
chr2_-_84678790 Show fit	0.03	ENSRNOT00000015886	Cct5 Links NCBI RGD Ensembl Show fit	chaperonin containing TCP1 subunit 5
chr4_-_157679962 Show fit	0.02	ENSRNOT00000050443	Gapdh Links NCBI RGD Ensembl Show fit	glyceraldehyde-3-phosphate dehydrogenase
chr16_+_1979191 Show fit	0.02	ENSRNOT00000014382	Ppif Links NCBI RGD Ensembl Show fit	peptidylprolyl isomerase F
chr13_-_93677377 Show fit	0.02	ENSRNOT00000004917	Fh Links NCBI RGD Ensembl Show fit	fumarate hydratase
chr1_+_145770135 Show fit	0.02	ENSRNOT00000015320	Stard5 Links NCBI RGD Ensembl Show fit	StAR-related lipid transfer domain containing 5
chr18_+_74156553 Show fit	0.02	ENSRNOT00000022892	Atp5a1 Links NCBI RGD Ensembl Show fit	ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1, cardiac muscle
chr12_-_24365324 Show fit	0.02	ENSRNOT00000032250	Trim50 Links NCBI RGD Ensembl Show fit	tripartite motif-containing 50
chr2_+_186980793 Show fit	0.02	ENSRNOT00000091336	Arhgef11 Links NCBI RGD Ensembl Show fit	Rho guanine nucleotide exchange factor 11
chr4_+_115046693 Show fit	0.02	ENSRNOT00000031583	Bola3 Links NCBI RGD Ensembl Show fit	bolA family member 3
chr7_+_117409576 Show fit	0.02	ENSRNOT00000017067	Cyc1 Links NCBI RGD Ensembl Show fit	cytochrome c-1
chr7_-_81592206 Show fit	0.02	ENSRNOT00000007979	Angpt1 Links NCBI RGD Ensembl Show fit	angiopoietin 1
chr1_-_170404056 Show fit	0.02	ENSRNOT00000024402	Apbb1 Links NCBI RGD Ensembl Show fit	amyloid beta precursor protein binding family B member 1
chr9_+_20213776 Show fit	0.02	ENSRNOT00000071439	LOC100911515 Links NCBI RGD Ensembl Show fit	triosephosphate isomerase-like
chr18_+_73564247 Show fit	0.02	ENSRNOT00000077679 ENSRNOT00000035317	St8sia5 Links NCBI RGD Ensembl Show fit	ST8 alpha-N-acetyl-neuraminide alpha-2,8-sialyltransferase 5
chr18_+_402295 Show fit	0.02	ENSRNOT00000033618	Fundc2 Links NCBI RGD Ensembl Show fit	FUN14 domain containing 2
chr9_+_43259709 Show fit	0.02	ENSRNOT00000022487	Cox5b Links NCBI RGD Ensembl Show fit	cytochrome c oxidase subunit 5B
chr16_-_69242028 Show fit	0.02	ENSRNOT00000019002	Zfp703 Links NCBI RGD Ensembl Show fit	zinc finger protein 703
chr9_+_90880614 Show fit	0.02	ENSRNOT00000077859 ENSRNOT00000020705 ENSRNOT00000089142	Mff Links NCBI RGD Ensembl Show fit	mitochondrial fission factor
chr2_+_186980992 Show fit	0.02	ENSRNOT00000020717	Arhgef11 Links NCBI RGD Ensembl Show fit	Rho guanine nucleotide exchange factor 11
chr5_-_126911520 Show fit	0.01	ENSRNOT00000091521	Dio1 Links NCBI RGD Ensembl Show fit	deiodinase, iodothyronine, type I
chr1_-_78968329 Show fit	0.01	ENSRNOT00000023078	Ppp5c Links NCBI RGD Ensembl Show fit	protein phosphatase 5, catalytic subunit
chr10_-_15155412 Show fit	0.01	ENSRNOT00000026536	Haghl Links NCBI RGD Ensembl Show fit	hydroxyacylglutathione hydrolase-like
chr14_-_93042182 Show fit	0.01	ENSRNOT00000005432	LOC100361025 Links NCBI RGD Ensembl Show fit	protein arginine methyltransferase 1-like
chr12_+_25264192 Show fit	0.01	ENSRNOT00000079392	Gtf2ird1 Links NCBI RGD Ensembl Show fit	GTF2I repeat domain containing 1
chr11_-_60613718 Show fit	0.01	ENSRNOT00000002906	Atg3 Links NCBI RGD Ensembl Show fit	autophagy related 3
chr13_-_85622314 Show fit	0.01	ENSRNOT00000005719	Mgst3 Links NCBI RGD Ensembl Show fit	microsomal glutathione S-transferase 3
chr10_-_88356538 Show fit	0.01	ENSRNOT00000022430	Nt5c3b Links NCBI RGD Ensembl Show fit	5'-nucleotidase, cytosolic IIIB
chr1_-_263269762 Show fit	0.01	ENSRNOT00000022309	Got1 Links NCBI RGD Ensembl Show fit	glutamic-oxaloacetic transaminase 1
chr10_+_10761477 Show fit	0.01	ENSRNOT00000004176	Rogdi Links NCBI RGD Ensembl Show fit	rogdi homolog
chr6_-_123405246 Show fit	0.01	ENSRNOT00000083665	Foxn3 Links NCBI RGD Ensembl Show fit	forkhead box N3
chr6_+_128750795 Show fit	0.01	ENSRNOT00000005781	Glrx5 Links NCBI RGD Ensembl Show fit	glutaredoxin 5
chr10_-_88357025 Show fit	0.01	ENSRNOT00000080006	Nt5c3b Links NCBI RGD Ensembl Show fit	5'-nucleotidase, cytosolic IIIB
chr15_+_2631529 Show fit	0.01	ENSRNOT00000018897	Comtd1 Links NCBI RGD Ensembl Show fit	catechol-O-methyltransferase domain containing 1
chr4_-_157331905 Show fit	0.01	ENSRNOT00000020647	Tpi1 Links NCBI RGD Ensembl Show fit	triosephosphate isomerase 1
chr10_+_17486579 Show fit	0.01	ENSRNOT00000080404	Stk10 Links NCBI RGD Ensembl Show fit	serine/threonine kinase 10
chr5_+_159484370 Show fit	0.01	ENSRNOT00000010593	Sdhb Links NCBI RGD Ensembl Show fit	succinate dehydrogenase complex iron sulfur subunit B
chr7_+_11521998 Show fit	0.01	ENSRNOT00000026960	Sgta Links NCBI RGD Ensembl Show fit	small glutamine rich tetratricopeptide repeat containing alpha
chr6_+_2216623 Show fit	0.01	ENSRNOT00000008045	Rmdn2 Links NCBI RGD Ensembl Show fit	regulator of microtubule dynamics 2
chr15_+_61662264 Show fit	0.01	ENSRNOT00000072969	Mtrf1 Links NCBI RGD Ensembl Show fit	mitochondrial translation release factor 1
chr3_+_94549180 Show fit	0.01	ENSRNOT00000016318	Cstf3 Links NCBI RGD Ensembl Show fit	cleavage stimulation factor subunit 3
chr16_-_29936307 Show fit	0.01	ENSRNOT00000088707	Ddx60 Links NCBI RGD Ensembl Show fit	DEAD (Asp-Glu-Ala-Asp) box polypeptide 60
chr5_+_156850206 Show fit	0.01	ENSRNOT00000021833	Mul1 Links NCBI RGD Ensembl Show fit	mitochondrial E3 ubiquitin protein ligase 1
chr18_-_27749235 Show fit	0.01	ENSRNOT00000026696	Hspa9 Links NCBI RGD Ensembl Show fit	heat shock protein family A member 9
chr5_+_118743632 Show fit	0.01	ENSRNOT00000013785	Pgm1 Links NCBI RGD Ensembl Show fit	phosphoglucomutase 1
chr9_+_61692154 Show fit	0.01	ENSRNOT00000082300	Hspe1 Links NCBI RGD Ensembl Show fit	heat shock protein family E member 1
chr7_-_120518653 Show fit	0.01	ENSRNOT00000016362	Baiap2l2 Links NCBI RGD Ensembl Show fit	BAI1-associated protein 2-like 2
chr18_+_28370085 Show fit	0.01	ENSRNOT00000083993	Matr3 Links NCBI RGD Ensembl Show fit	matrin 3
chr3_+_11607225 Show fit	0.01	ENSRNOT00000072685	St6galnac4 Links NCBI RGD Ensembl Show fit	ST6 N-acetylgalactosaminide alpha-2,6-sialyltransferase 4
chr10_+_64556064 Show fit	0.01	ENSRNOT00000010778	Timm22 Links NCBI RGD Ensembl Show fit	translocase of inner mitochondrial membrane 22
chr1_+_190555177 Show fit	0.01	ENSRNOT00000021514	Uqcrc2 Links NCBI RGD Ensembl Show fit	ubiquinol cytochrome c reductase core protein 2
chr10_-_82399484 Show fit	0.00	ENSRNOT00000082972 ENSRNOT00000055582	Xylt2 Links NCBI RGD Ensembl Show fit	xylosyltransferase 2
chr8_+_55037750 Show fit	0.00	ENSRNOT00000013188	Timm8b Links NCBI RGD Ensembl Show fit	translocase of inner mitochondrial membrane 8 homolog B
chr8_+_59164572 Show fit	0.00	ENSRNOT00000015102	Idh3a Links NCBI RGD Ensembl Show fit	isocitrate dehydrogenase 3 (NAD+) alpha
chr7_+_2504695 Show fit	0.00	ENSRNOT00000003965	Atp5b Links NCBI RGD Ensembl Show fit	ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
chr8_-_39093277 Show fit	0.00	ENSRNOT00000043344	LOC100911068 Links NCBI RGD Ensembl Show fit	roundabout homolog 4-like
chr6_-_93562314 Show fit	0.00	ENSRNOT00000010871 ENSRNOT00000088790	Timm9 Links NCBI RGD Ensembl Show fit	translocase of inner mitochondrial membrane 9
chr8_+_39878955 Show fit	0.00	ENSRNOT00000060300	LOC100911068 Links NCBI RGD Ensembl Show fit	roundabout homolog 4-like
chr11_-_71419223 Show fit	0.00	ENSRNOT00000002407	Tfrc Links NCBI RGD Ensembl Show fit	transferrin receptor
chr10_-_90127600 Show fit	0.00	ENSRNOT00000028368	Lsm12 Links NCBI RGD Ensembl Show fit	LSM12 homolog
chr10_+_109533487 Show fit	0.00	ENSRNOT00000054975	Fscn2 Links NCBI RGD Ensembl Show fit	fascin actin-bundling protein 2, retinal
chr10_+_88356615 Show fit	0.00	ENSRNOT00000022687	Klhl10 Links NCBI RGD Ensembl Show fit	kelch-like family member 10

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.3	GO:0043133	hindgut contraction(GO:0043133) regulation of hindgut contraction(GO:0043134)
0.1	0.3	GO:0060066	metanephric part of ureteric bud development(GO:0035502) oviduct development(GO:0060066)
0.0	0.0	GO:0006106	fumarate metabolic process(GO:0006106)
0.0	0.0	GO:0019355	nicotinamide nucleotide biosynthetic process from aspartate(GO:0019355) 'de novo' NAD biosynthetic process from aspartate(GO:0034628)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.2	GO:0005927	muscle tendon junction(GO:0005927)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0046538	bisphosphoglycerate mutase activity(GO:0004082) phosphoglycerate mutase activity(GO:0004619) 2,3-bisphosphoglycerate-dependent phosphoglycerate mutase activity(GO:0046538)
0.0	0.0	GO:0004515	nicotinamide-nucleotide adenylyltransferase activity(GO:0000309) nicotinate-nucleotide adenylyltransferase activity(GO:0004515)
0.0	0.3	GO:0005184	neuropeptide hormone activity(GO:0005184)