GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Evx2 Links NCBI RGD Ensembl	ENSRNOG00000001589	even-skipped homeobox 2

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Evx2	rn6_v1_chr3_-_61581598_61581598	-0.06	9.2e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr10_-_88670430 Show fit	2.23	ENSRNOT00000025547	Hcrt Links NCBI RGD Ensembl Show fit	hypocretin neuropeptide precursor
chr12_-_2174131 Show fit	1.28	ENSRNOT00000001313	Pcp2 Links NCBI RGD Ensembl Show fit	Purkinje cell protein 2
chr4_+_148782479 Show fit	1.04	ENSRNOT00000018133	LOC500300 Links NCBI RGD Ensembl Show fit	similar to hypothetical protein MGC6835
chr20_-_9855443 Show fit	0.46	ENSRNOT00000090275 ENSRNOT00000066266	Tff3 Links NCBI RGD Ensembl Show fit	trefoil factor 3
chr7_-_28711761 Show fit	0.40	ENSRNOT00000006249	Parpbp Links NCBI RGD Ensembl Show fit	PARP1 binding protein
chr9_+_98924134 Show fit	0.29	ENSRNOT00000027597	Twist2 Links NCBI RGD Ensembl Show fit	twist family bHLH transcription factor 2
chr20_+_44680449 Show fit	0.26	ENSRNOT00000000728	Traf3ip2 Links NCBI RGD Ensembl Show fit	Traf3 interacting protein 2
chr17_-_43776460 Show fit	0.18	ENSRNOT00000089055	Hist2h3c2 Links NCBI RGD Ensembl Show fit	histone cluster 2, H3c2
chr13_+_89480058 Show fit	0.16	ENSRNOT00000050804	Cfap126 Links NCBI RGD Ensembl Show fit	cilia and flagella associated protein 126
chr2_+_188583664 Show fit	0.16	ENSRNOT00000045477	Dpm3 Links NCBI RGD Ensembl Show fit	dolichyl-phosphate mannosyltransferase subunit 3
chr8_+_57983556 Show fit	0.15	ENSRNOT00000009562	RGD1311251 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA 4930550C14
chr14_-_115052450 Show fit	0.15	ENSRNOT00000067998	Acyp2 Links NCBI RGD Ensembl Show fit	acylphosphatase 2
chr19_-_37938857 Show fit	0.14	ENSRNOT00000026730	Slc12a4 Links NCBI RGD Ensembl Show fit	solute carrier family 12 member 4
chr12_-_19167015 Show fit	0.14	ENSRNOT00000001797	Gjc3 Links NCBI RGD Ensembl Show fit	gap junction protein, gamma 3
chr10_+_103395511 Show fit	0.14	ENSRNOT00000004256	Gprc5c Links NCBI RGD Ensembl Show fit	G protein-coupled receptor, class C, group 5, member C
chr3_+_80072489 Show fit	0.11	ENSRNOT00000057176	Pacsin3 Links NCBI RGD Ensembl Show fit	protein kinase C and casein kinase substrate in neurons 3
chr5_+_28485619 Show fit	0.10	ENSRNOT00000093341 ENSRNOT00000093129	LOC100912373 Links NCBI RGD Ensembl Show fit	uncharacterized LOC100912373
chr5_-_151473750 Show fit	0.09	ENSRNOT00000011357	Tmem222 Links NCBI RGD Ensembl Show fit	transmembrane protein 222
chr13_+_90514336 Show fit	0.09	ENSRNOT00000088996 ENSRNOT00000085377	Pex19 Links NCBI RGD Ensembl Show fit	peroxisomal biogenesis factor 19
chr12_-_48627297 Show fit	0.08	ENSRNOT00000000890	Iscu Links NCBI RGD Ensembl Show fit	iron-sulfur cluster assembly enzyme
chr1_-_189238776 Show fit	0.08	ENSRNOT00000020817	Pdilt Links NCBI RGD Ensembl Show fit	protein disulfide isomerase-like, testis expressed
chr16_+_51748970 Show fit	0.08	ENSRNOT00000059182	Adam26a Links NCBI RGD Ensembl Show fit	a disintegrin and metallopeptidase domain 26A
chr13_-_73638073 Show fit	0.08	ENSRNOT00000005195	Cep350 Links NCBI RGD Ensembl Show fit	centrosomal protein 350
chr7_+_38900593 Show fit	0.08	ENSRNOT00000072166	Epyc Links NCBI RGD Ensembl Show fit	epiphycan
chr3_-_165537940 Show fit	0.08	ENSRNOT00000071119 ENSRNOT00000070964	Sall4 Links NCBI RGD Ensembl Show fit	spalt-like transcription factor 4
chr10_+_11046221 Show fit	0.08	ENSRNOT00000005109	Nmral1 Links NCBI RGD Ensembl Show fit	NmrA like redox sensor 1
chr13_+_90943255 Show fit	0.08	ENSRNOT00000011539	Vsig8 Links NCBI RGD Ensembl Show fit	V-set and immunoglobulin domain containing 8
chr9_+_15166118 Show fit	0.07	ENSRNOT00000020432	Mdfi Links NCBI RGD Ensembl Show fit	MyoD family inhibitor
chr11_-_61234944 Show fit	0.07	ENSRNOT00000059680	Cfap44 Links NCBI RGD Ensembl Show fit	cilia and flagella associated protein 44
chr16_-_70242979 Show fit	0.07	ENSRNOT00000071269	LOC103689964 Links NCBI RGD Ensembl Show fit	vacuolar ATPase assembly integral membrane protein Vma21
chr1_+_189432604 Show fit	0.07	ENSRNOT00000034610	Acsm4 Links NCBI RGD Ensembl Show fit	acyl-CoA synthetase medium-chain family member 4
chr4_+_70977556 Show fit	0.06	ENSRNOT00000031984	LOC680112 Links NCBI RGD Ensembl Show fit	hypothetical protein LOC680112
chr7_-_12311149 Show fit	0.06	ENSRNOT00000046886	Dazap1 Links NCBI RGD Ensembl Show fit	DAZ associated protein 1
chr4_-_21920651 Show fit	0.06	ENSRNOT00000066211	Tmem243 Links NCBI RGD Ensembl Show fit	transmembrane protein 243
chr1_+_185863043 Show fit	0.06	ENSRNOT00000079072	Sox6 Links NCBI RGD Ensembl Show fit	SRY box 6
chr17_-_34945317 Show fit	0.06	ENSRNOT00000090457	Vma21 Links NCBI RGD Ensembl Show fit	VMA21 vacuolar H+-ATPase homolog (S. cerevisiae)
chrX_-_134866210 Show fit	0.06	ENSRNOT00000005331	Apln Links NCBI RGD Ensembl Show fit	apelin
chr1_-_88657845 Show fit	0.05	ENSRNOT00000074211	LOC100912380 Links NCBI RGD Ensembl Show fit	calpain small subunit 1-like
chr20_+_7409401 Show fit	0.05	ENSRNOT00000000586	Snrpc Links NCBI RGD Ensembl Show fit	small nuclear ribonucleoprotein polypeptide C
chr3_+_113319456 Show fit	0.05	ENSRNOT00000051354	Ckmt1 Links NCBI RGD Ensembl Show fit	creatine kinase, mitochondrial 1
chr11_-_87403367 Show fit	0.05	ENSRNOT00000057751	Thap7 Links NCBI RGD Ensembl Show fit	THAP domain containing 7
chr10_-_14324170 Show fit	0.05	ENSRNOT00000035513 ENSRNOT00000090587	Hn1l Links NCBI RGD Ensembl Show fit	hematological and neurological expressed 1-like
chr17_+_9797907 Show fit	0.05	ENSRNOT00000021638	Lman2 Links NCBI RGD Ensembl Show fit	lectin, mannose-binding 2
chr1_-_57518458 Show fit	0.05	ENSRNOT00000002040	Pdcd2 Links NCBI RGD Ensembl Show fit	programmed cell death 2
chr1_-_252461461 Show fit	0.04	ENSRNOT00000026093	Ankrd22 Links NCBI RGD Ensembl Show fit	ankyrin repeat domain 22
chr15_-_12889102 Show fit	0.04	ENSRNOT00000061214 ENSRNOT00000084687	RGD1306063 Links NCBI RGD Ensembl Show fit	similar to HT021
chr20_-_157665 Show fit	0.04	ENSRNOT00000048858 ENSRNOT00000079494	RT1-CE10 Links NCBI RGD Ensembl Show fit	RT1 class I, locus CE10
chr13_+_82438697 Show fit	0.03	ENSRNOT00000003759	Selp Links NCBI RGD Ensembl Show fit	selectin P
chr8_+_126975833 Show fit	0.03	ENSRNOT00000088348	AABR07071701.1 Links NCBI RGD Ensembl Show fit
chr11_-_62067655 Show fit	0.03	ENSRNOT00000093382	Zbtb20 Links NCBI RGD Ensembl Show fit	zinc finger and BTB domain containing 20
chr3_-_113091770 Show fit	0.03	ENSRNOT00000068132	Lcmt2 Links NCBI RGD Ensembl Show fit	leucine carboxyl methyltransferase 2
chr2_-_219262901 Show fit	0.03	ENSRNOT00000037068	Gpr88 Links NCBI RGD Ensembl Show fit	G-protein coupled receptor 88
chr5_+_117583502 Show fit	0.03	ENSRNOT00000010933	Usp1 Links NCBI RGD Ensembl Show fit	ubiquitin specific peptidase 1
chr20_-_4698718 Show fit	0.03	ENSRNOT00000047527	RT1-CE7 Links NCBI RGD Ensembl Show fit	RT1 class I, locus CE7
chr2_-_158156444 Show fit	0.03	ENSRNOT00000088559	Veph1 Links NCBI RGD Ensembl Show fit	ventricular zone expressed PH domain-containing 1
chr11_+_58624198 Show fit	0.03	ENSRNOT00000002091	Gap43 Links NCBI RGD Ensembl Show fit	growth associated protein 43
chr8_-_114617466 Show fit	0.02	ENSRNOT00000082992 ENSRNOT00000038160	Col6a5 Links NCBI RGD Ensembl Show fit	collagen type VI alpha 5 chain
chrX_+_110016995 Show fit	0.02	ENSRNOT00000093542	Nrk Links NCBI RGD Ensembl Show fit	Nik related kinase
chr1_-_142759882 Show fit	0.02	ENSRNOT00000015218	Sec11a Links NCBI RGD Ensembl Show fit	SEC11 homolog A, signal peptidase complex subunit
chr9_+_8052210 Show fit	0.02	ENSRNOT00000073659	Adgre4 Links NCBI RGD Ensembl Show fit	adhesion G protein-coupled receptor E4
chr1_+_98414226 Show fit	0.02	ENSRNOT00000090785	Siglecl1 Links NCBI RGD Ensembl Show fit	SIGLEC family like 1
chr10_-_43931094 Show fit	0.01	ENSRNOT00000039778	Olr1415 Links NCBI RGD Ensembl Show fit	olfactory receptor 1415
chr15_-_12129220 Show fit	0.01	ENSRNOT00000029318	Olr1605 Links NCBI RGD Ensembl Show fit	olfactory receptor 1605
chr7_-_113228439 Show fit	0.01	ENSRNOT00000034672	Col22a1 Links NCBI RGD Ensembl Show fit	collagen type XXII alpha 1 chain
chr18_+_16544508 Show fit	0.01	ENSRNOT00000020601	Elp2 Links NCBI RGD Ensembl Show fit	elongator acetyltransferase complex subunit 2
chr18_-_16543992 Show fit	0.01	ENSRNOT00000036306	Slc39a6 Links NCBI RGD Ensembl Show fit	solute carrier family 39 member 6
chr12_+_41486076 Show fit	0.01	ENSRNOT00000057242	Rita1 Links NCBI RGD Ensembl Show fit	RBPJ interacting and tubulin associated 1
chr20_+_3176107 Show fit	0.01	ENSRNOT00000001036	RT1-S3 Links NCBI RGD Ensembl Show fit	RT1 class Ib, locus S3
chr1_-_81550598 Show fit	0.00	ENSRNOT00000051671	RGD1564380 Links NCBI RGD Ensembl Show fit	similar to BC049730 protein

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.3	2.2	GO:0051970	negative regulation of transmission of nerve impulse(GO:0051970)
0.2	1.3	GO:0016056	rhodopsin mediated signaling pathway(GO:0016056)
0.0	0.3	GO:0061303	cornea development in camera-type eye(GO:0061303)
0.0	0.4	GO:2000042	negative regulation of double-strand break repair via homologous recombination(GO:2000042)
0.0	0.1	GO:0016557	peroxisome membrane biogenesis(GO:0016557)
0.0	0.1	GO:0043396	corticotropin-releasing hormone secretion(GO:0043396) regulation of corticotropin-releasing hormone secretion(GO:0043397)
0.0	0.3	GO:0002230	positive regulation of defense response to virus by host(GO:0002230)
0.0	0.1	GO:0097428	protein maturation by iron-sulfur cluster transfer(GO:0097428)
0.0	0.1	GO:0021779	oligodendrocyte cell fate specification(GO:0021778) oligodendrocyte cell fate commitment(GO:0021779) glial cell fate specification(GO:0021780)
0.0	0.2	GO:0035269	protein O-linked mannosylation(GO:0035269)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.2	GO:0033185	dolichol-phosphate-mannose synthase complex(GO:0033185)
0.0	2.2	GO:0005791	rough endoplasmic reticulum(GO:0005791)
0.0	0.0	GO:0031092	platelet alpha granule membrane(GO:0031092)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	2.2	GO:0005184	neuropeptide hormone activity(GO:0005184)
0.1	0.2	GO:0004582	dolichyl-phosphate beta-D-mannosyltransferase activity(GO:0004582)
0.0	0.1	GO:0000268	peroxisome targeting sequence binding(GO:0000268)
0.0	0.1	GO:0022820	potassium:chloride symporter activity(GO:0015379) potassium ion symporter activity(GO:0022820)
0.0	0.1	GO:0019855	calcium channel inhibitor activity(GO:0019855)
0.0	0.1	GO:0031545	peptidyl-proline 4-dioxygenase activity(GO:0031545)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	2.2	REACTOME PEPTIDE LIGAND BINDING RECEPTORS	Genes involved in Peptide ligand-binding receptors