GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Figla Links NCBI RGD Ensembl	ENSRNOG00000015877	folliculogenesis specific bHLH transcription factor

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr20_-_27083410 Show fit	0.16	ENSRNOT00000000432	Atoh7 Links NCBI RGD Ensembl Show fit	atonal bHLH transcription factor 7
chrX_+_111396995 Show fit	0.08	ENSRNOT00000087634	Pih1d3 Links NCBI RGD Ensembl Show fit	PIH1 domain containing 3
chr20_+_5050327 Show fit	0.07	ENSRNOT00000083353	Ddah2 Links NCBI RGD Ensembl Show fit	dimethylarginine dimethylaminohydrolase 2
chr4_-_28437676 Show fit	0.07	ENSRNOT00000012995	Hepacam2 Links NCBI RGD Ensembl Show fit	HEPACAM family member 2
chr8_+_116754178 Show fit	0.06	ENSRNOT00000068295 ENSRNOT00000084429	Uba7 Links NCBI RGD Ensembl Show fit	ubiquitin-like modifier activating enzyme 7
chr6_-_59950586 Show fit	0.06	ENSRNOT00000005800	Arl4a Links NCBI RGD Ensembl Show fit	ADP-ribosylation factor like GTPase 4A
chr4_-_482645 Show fit	0.06	ENSRNOT00000062073 ENSRNOT00000071713	Cnpy1 Links NCBI RGD Ensembl Show fit	canopy FGF signaling regulator 1
chr1_+_80135391 Show fit	0.06	ENSRNOT00000021893	Gpr4 Links NCBI RGD Ensembl Show fit	G protein-coupled receptor 4
chr1_-_221431713 Show fit	0.05	ENSRNOT00000028485	Tm7sf2 Links NCBI RGD Ensembl Show fit	transmembrane 7 superfamily member 2
chr10_-_14013870 Show fit	0.05	ENSRNOT00000004172	Slc9a3r2 Links NCBI RGD Ensembl Show fit	SLC9A3 regulator 2
chr1_+_100891866 Show fit	0.05	ENSRNOT00000086890 ENSRNOT00000083336	Fuz Links NCBI RGD Ensembl Show fit	fuzzy planar cell polarity protein
chr10_+_104368247 Show fit	0.05	ENSRNOT00000006519	Llgl2 Links NCBI RGD Ensembl Show fit	LLGL2, scribble cell polarity complex component
chr1_+_41325462 Show fit	0.05	ENSRNOT00000081017 ENSRNOT00000078494 ENSRNOT00000088168	Esr1 Links NCBI RGD Ensembl Show fit	estrogen receptor 1
chr2_+_95008311 Show fit	0.04	ENSRNOT00000077270	Tpd52 Links NCBI RGD Ensembl Show fit	tumor protein D52
chr9_+_66335492 Show fit	0.04	ENSRNOT00000037555	RGD1562029 Links NCBI RGD Ensembl Show fit	similar to KIAA2012 protein
chr16_-_49574314 Show fit	0.04	ENSRNOT00000017568 ENSRNOT00000085535 ENSRNOT00000017054	Pdlim3 Links NCBI RGD Ensembl Show fit	PDZ and LIM domain 3
chr15_+_4475051 Show fit	0.04	ENSRNOT00000008461	Kcnk16 Links NCBI RGD Ensembl Show fit	potassium two pore domain channel subfamily K member 16
chr7_+_120273117 Show fit	0.04	ENSRNOT00000014349	Galr3 Links NCBI RGD Ensembl Show fit	galanin receptor 3
chr16_-_39970532 Show fit	0.04	ENSRNOT00000071331	Spata4 Links NCBI RGD Ensembl Show fit	spermatogenesis associated 4
chr3_+_148386189 Show fit	0.04	ENSRNOT00000011255	Mylk2 Links NCBI RGD Ensembl Show fit	myosin light chain kinase 2
chr13_+_80517536 Show fit	0.03	ENSRNOT00000004386	Myoc Links NCBI RGD Ensembl Show fit	myocilin
chr7_-_143016040 Show fit	0.03	ENSRNOT00000029697	Krt80 Links NCBI RGD Ensembl Show fit	keratin 80
chr8_-_117353672 Show fit	0.03	ENSRNOT00000027262	Ndufaf3 Links NCBI RGD Ensembl Show fit	NADH:ubiquinone oxidoreductase complex assembly factor 3
chr14_+_33354807 Show fit	0.03	ENSRNOT00000049774	Hopx Links NCBI RGD Ensembl Show fit	HOP homeobox
chr4_-_82271893 Show fit	0.03	ENSRNOT00000075005	Hoxa7 Links NCBI RGD Ensembl Show fit	homeobox A7
chr6_+_26051396 Show fit	0.03	ENSRNOT00000006452	Rbks Links NCBI RGD Ensembl Show fit	ribokinase
chr5_-_155772040 Show fit	0.03	ENSRNOT00000036788	Cela3b Links NCBI RGD Ensembl Show fit	chymotrypsin-like elastase family, member 3B
chr10_-_82887497 Show fit	0.03	ENSRNOT00000005644	Itga3 Links NCBI RGD Ensembl Show fit	integrin subunit alpha 3
chr5_+_154522119 Show fit	0.03	ENSRNOT00000072618	E2f2 Links NCBI RGD Ensembl Show fit	E2F transcription factor 2
chr7_-_2912491 Show fit	0.03	ENSRNOT00000048453	AC128207.1 Links NCBI RGD Ensembl Show fit
chr18_+_61377051 Show fit	0.03	ENSRNOT00000066659	Oacyl Links NCBI RGD Ensembl Show fit	O-acyltransferase like
chr10_+_86303727 Show fit	0.03	ENSRNOT00000037752	Ppp1r1b Links NCBI RGD Ensembl Show fit	protein phosphatase 1, regulatory (inhibitor) subunit 1B
chr19_+_22699808 Show fit	0.03	ENSRNOT00000023169	RGD1308706 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA 4921524J17
chr15_+_48674380 Show fit	0.03	ENSRNOT00000018762	Fbxo16 Links NCBI RGD Ensembl Show fit	F-box protein 16
chr15_+_89407426 Show fit	0.03	ENSRNOT00000039423	Ndfip2 Links NCBI RGD Ensembl Show fit	Nedd4 family interacting protein 2
chr8_+_32018560 Show fit	0.03	ENSRNOT00000007358	Adamts8 Links NCBI RGD Ensembl Show fit	ADAM metallopeptidase with thrombospondin type 1 motif, 8
chr4_-_82186190 Show fit	0.02	ENSRNOT00000071729	LOC100911622 Links NCBI RGD Ensembl Show fit	homeobox protein Hox-A7-like
chr3_+_161236898 Show fit	0.02	ENSRNOT00000082303 ENSRNOT00000020323	Ube2c Links NCBI RGD Ensembl Show fit	ubiquitin-conjugating enzyme E2C
chr5_+_29538380 Show fit	0.02	ENSRNOT00000010845	Calb1 Links NCBI RGD Ensembl Show fit	calbindin 1
chr4_-_60358562 Show fit	0.02	ENSRNOT00000018001	Chchd3 Links NCBI RGD Ensembl Show fit	coiled-coil-helix-coiled-coil-helix domain containing 3
chr1_+_7252349 Show fit	0.02	ENSRNOT00000030329	Plagl1 Links NCBI RGD Ensembl Show fit	PLAG1 like zinc finger 1
chrX_-_154918095 Show fit	0.02	ENSRNOT00000085224	LOC100911991 Links NCBI RGD Ensembl Show fit	elongation factor 1-alpha 1-like
chr1_-_165680176 Show fit	0.02	ENSRNOT00000025245 ENSRNOT00000082697	Plekhb1 Links NCBI RGD Ensembl Show fit	pleckstrin homology domain containing B1
chr10_-_89088993 Show fit	0.02	ENSRNOT00000027458	Ccr10 Links NCBI RGD Ensembl Show fit	C-C motif chemokine receptor 10
chr10_-_108196217 Show fit	0.02	ENSRNOT00000075440	Cbx4 Links NCBI RGD Ensembl Show fit	chromobox 4
chr15_-_37383277 Show fit	0.02	ENSRNOT00000011711	Gjb2 Links NCBI RGD Ensembl Show fit	gap junction protein, beta 2
chr3_-_60460724 Show fit	0.02	ENSRNOT00000024706	Chrna1 Links NCBI RGD Ensembl Show fit	cholinergic receptor nicotinic alpha 1 subunit
chr18_+_48132414 Show fit	0.02	ENSRNOT00000050631	Snx2 Links NCBI RGD Ensembl Show fit	sorting nexin 2
chr1_+_85368288 Show fit	0.02	ENSRNOT00000026720	Med29 Links NCBI RGD Ensembl Show fit	mediator complex subunit 29
chr13_-_110642754 Show fit	0.02	ENSRNOT00000029039	LOC100362350 Links NCBI RGD Ensembl Show fit	hydroxysteroid 17-beta dehydrogenase 6-like
chr5_-_24631679 Show fit	0.02	ENSRNOT00000010846 ENSRNOT00000067129	Esrp1 Links NCBI RGD Ensembl Show fit	epithelial splicing regulatory protein 1
chr10_-_87529599 Show fit	0.02	ENSRNOT00000074099	Krtap2-1 Links NCBI RGD Ensembl Show fit	keratin associated protein 2-1
chr10_-_54467956 Show fit	0.02	ENSRNOT00000065383	Usp43 Links NCBI RGD Ensembl Show fit	ubiquitin specific peptidase 43
chr2_-_43068677 Show fit	0.02	ENSRNOT00000036658	Gpbp1 Links NCBI RGD Ensembl Show fit	GC-rich promoter binding protein 1
chr1_+_100470722 Show fit	0.02	ENSRNOT00000086917	Aspdh Links NCBI RGD Ensembl Show fit	aspartate dehydrogenase domain containing
chr9_-_18371856 Show fit	0.02	ENSRNOT00000027293	Supt3h Links NCBI RGD Ensembl Show fit	SPT3 homolog, SAGA and STAGA complex component
chr17_-_42267079 Show fit	0.02	ENSRNOT00000059564	LOC100911664 Links NCBI RGD Ensembl Show fit	uncharacterized LOC100911664
chr10_+_106812739 Show fit	0.02	ENSRNOT00000074225	Syngr2 Links NCBI RGD Ensembl Show fit	synaptogyrin 2
chr20_-_2210033 Show fit	0.02	ENSRNOT00000084596	Trim26 Links NCBI RGD Ensembl Show fit	tripartite motif-containing 26
chr1_+_80000165 Show fit	0.02	ENSRNOT00000084912	Six5 Links NCBI RGD Ensembl Show fit	SIX homeobox 5
chr3_+_112531703 Show fit	0.01	ENSRNOT00000041727	LOC100911204 Links NCBI RGD Ensembl Show fit	protein CASC5-like
chrX_+_92131209 Show fit	0.01	ENSRNOT00000004462	Pabpc5 Links NCBI RGD Ensembl Show fit	poly A binding protein, cytoplasmic 5
chr10_+_65772443 Show fit	0.01	ENSRNOT00000013296	Sebox Links NCBI RGD Ensembl Show fit	SEBOX homeobox
chr10_+_16542882 Show fit	0.01	ENSRNOT00000028146	Stc2 Links NCBI RGD Ensembl Show fit	stanniocalcin 2
chr6_-_26051229 Show fit	0.01	ENSRNOT00000005855	Bre Links NCBI RGD Ensembl Show fit	brain and reproductive organ-expressed (TNFRSF1A modulator)
chr1_-_80311043 Show fit	0.01	ENSRNOT00000068092	Klc3 Links NCBI RGD Ensembl Show fit	kinesin light chain 3
chr10_-_87535438 Show fit	0.01	ENSRNOT00000086873	Krtap2-4 Links NCBI RGD Ensembl Show fit	keratin associated protein 2-4
chr3_+_11476883 Show fit	0.01	ENSRNOT00000072241	Naif1 Links NCBI RGD Ensembl Show fit	nuclear apoptosis inducing factor 1
chr1_-_64433636 Show fit	0.01	ENSRNOT00000080032	Prkcg Links NCBI RGD Ensembl Show fit	protein kinase C, gamma
chr16_-_40025401 Show fit	0.01	ENSRNOT00000066639	Asb5 Links NCBI RGD Ensembl Show fit	ankyrin repeat and SOCS box-containing 5
chr1_+_78739930 Show fit	0.01	ENSRNOT00000021976	Strn4 Links NCBI RGD Ensembl Show fit	striatin 4
chr20_+_6102277 Show fit	0.01	ENSRNOT00000033064	Pnpla1 Links NCBI RGD Ensembl Show fit	patatin-like phospholipase domain containing 1
chr8_+_62341613 Show fit	0.01	ENSRNOT00000066923	Scamp2 Links NCBI RGD Ensembl Show fit	secretory carrier membrane protein 2
chr10_-_66848388 Show fit	0.01	ENSRNOT00000018891	Omg Links NCBI RGD Ensembl Show fit	oligodendrocyte-myelin glycoprotein
chr9_+_99998275 Show fit	0.01	ENSRNOT00000074395	Gpc1 Links NCBI RGD Ensembl Show fit	glypican 1
chr10_-_70220558 Show fit	0.01	ENSRNOT00000041389 ENSRNOT00000076398 ENSRNOT00000076596	Rffl Links NCBI RGD Ensembl Show fit	ring finger and FYVE-like domain containing E3 ubiquitin protein ligase
chr1_-_72464492 Show fit	0.01	ENSRNOT00000068550	Nat14 Links NCBI RGD Ensembl Show fit	N-acetyltransferase 14
chr4_-_52350624 Show fit	0.01	ENSRNOT00000060476	Tmem229a Links NCBI RGD Ensembl Show fit	transmembrane protein 229A
chr10_-_87521514 Show fit	0.01	ENSRNOT00000084668 ENSRNOT00000071705	Krtap2-4l Links NCBI RGD Ensembl Show fit	keratin associated protein 2-4-like
chr9_+_94286550 Show fit	0.01	ENSRNOT00000026504	Chrnd Links NCBI RGD Ensembl Show fit	cholinergic receptor nicotinic delta subunit
chr8_+_39997875 Show fit	0.01	ENSRNOT00000050609	Esam Links NCBI RGD Ensembl Show fit	endothelial cell adhesion molecule
chr18_+_3887419 Show fit	0.01	ENSRNOT00000093089	Lama3 Links NCBI RGD Ensembl Show fit	laminin subunit alpha 3
chr10_-_56289882 Show fit	0.01	ENSRNOT00000090762 ENSRNOT00000056903	Tnfsf13 Links NCBI RGD Ensembl Show fit	tumor necrosis factor superfamily member 13
chr4_-_39102807 Show fit	0.01	ENSRNOT00000052063	Thsd7a Links NCBI RGD Ensembl Show fit	thrombospondin type 1 domain containing 7A
chr12_-_47360507 Show fit	0.01	ENSRNOT00000001562	Sppl3 Links NCBI RGD Ensembl Show fit	signal peptide peptidase like 3
chr4_+_56981283 Show fit	0.01	ENSRNOT00000010989	Tspan33 Links NCBI RGD Ensembl Show fit	tetraspanin 33
chr8_-_22874637 Show fit	0.01	ENSRNOT00000064551 ENSRNOT00000090424	Dock6 Links NCBI RGD Ensembl Show fit	dedicator of cytokinesis 6
chr20_-_2701637 Show fit	0.00	ENSRNOT00000049667	Hspa1a Links NCBI RGD Ensembl Show fit	heat shock protein family A (Hsp70) member 1A
chr3_+_125503638 Show fit	0.00	ENSRNOT00000028900	Crls1 Links NCBI RGD Ensembl Show fit	cardiolipin synthase 1
chr6_-_11494459 Show fit	0.00	ENSRNOT00000021570	Kcnk12 Links NCBI RGD Ensembl Show fit	potassium two pore domain channel subfamily K member 12
chr17_+_47721977 Show fit	0.00	ENSRNOT00000080800	LOC100910792 Links NCBI RGD Ensembl Show fit	amphiphysin-like
chr13_+_70157522 Show fit	0.00	ENSRNOT00000036906	Apobec4 Links NCBI RGD Ensembl Show fit	apolipoprotein B mRNA editing enzyme catalytic polypeptide like 4
chr8_+_55504359 Show fit	0.00	ENSRNOT00000059086	Btg4 Links NCBI RGD Ensembl Show fit	BTG anti-proliferation factor 4
chr11_+_50781127 Show fit	0.00	ENSRNOT00000002738	Alcam Links NCBI RGD Ensembl Show fit	activated leukocyte cell adhesion molecule
chr3_-_129357348 Show fit	0.00	ENSRNOT00000084829 ENSRNOT00000007410	Pak7 Links NCBI RGD Ensembl Show fit	p21 (RAC1) activated kinase 7
chr11_-_35749464 Show fit	0.00	ENSRNOT00000078818 ENSRNOT00000078425	Erg Links NCBI RGD Ensembl Show fit	ERG, ETS transcription factor
chr10_+_87808493 Show fit	0.00	ENSRNOT00000065405	LOC680428 Links NCBI RGD Ensembl Show fit	hypothetical protein LOC680428
chr7_-_101140308 Show fit	0.00	ENSRNOT00000006279	Fam84b Links NCBI RGD Ensembl Show fit	family with sequence similarity 84, member B
chr2_-_184289126 Show fit	0.00	ENSRNOT00000081678	Fbxw7 Links NCBI RGD Ensembl Show fit	F-box and WD repeat domain containing 7

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:2000313	fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation(GO:0060825) regulation of fibroblast growth factor receptor signaling pathway involved in neural plate anterior/posterior pattern formation(GO:2000313)
0.0	0.0	GO:1990375	baculum development(GO:1990375)
0.0	0.0	GO:0031448	regulation of fast-twitch skeletal muscle fiber contraction(GO:0031446) positive regulation of fast-twitch skeletal muscle fiber contraction(GO:0031448)
0.0	0.1	GO:0032020	ISG15-protein conjugation(GO:0032020)
0.0	0.0	GO:0016332	establishment or maintenance of polarity of embryonic epithelium(GO:0016332)
0.0	0.1	GO:0072144	glomerular mesangial cell development(GO:0072144)
0.0	0.0	GO:0019303	D-ribose catabolic process(GO:0019303)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0097453	mesaxon(GO:0097453) ensheathing process(GO:1990015)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0016403	dimethylargininase activity(GO:0016403)
0.0	0.1	GO:0032027	myosin light chain binding(GO:0032027)
0.0	0.0	GO:0031798	type 1 metabotropic glutamate receptor binding(GO:0031798)