GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Foxb1 Links NCBI RGD Ensembl	ENSRNOG00000010547	forkhead box B1

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Foxb1	rn6_v1_chr8_-_75995371_75995371	0.36	5.5e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr2_+_145174876 Show fit	0.10	ENSRNOT00000040631	Mab21l1 Links NCBI RGD Ensembl Show fit	mab-21 like 1
chr9_-_15274917 Show fit	0.09	ENSRNOT00000019650	Pgc Links NCBI RGD Ensembl Show fit	progastricsin
chr2_-_198382190 Show fit	0.07	ENSRNOT00000044268	Hist2h2aa2 Links NCBI RGD Ensembl Show fit	histone cluster 2, H2aa2
chr2_+_198388809 Show fit	0.07	ENSRNOT00000083087	Hist2h2aa3 Links NCBI RGD Ensembl Show fit	histone cluster 2, H2aa3
chr3_+_162357356 Show fit	0.07	ENSRNOT00000030119	Eya2 Links NCBI RGD Ensembl Show fit	EYA transcriptional coactivator and phosphatase 2
chr3_-_141411170 Show fit	0.06	ENSRNOT00000017364	Nkx2-2 Links NCBI RGD Ensembl Show fit	NK2 homeobox 2
chr16_+_50152008 Show fit	0.05	ENSRNOT00000019237	Klkb1 Links NCBI RGD Ensembl Show fit	kallikrein B1
chr7_-_114848414 Show fit	0.04	ENSRNOT00000032620	Slc45a4 Links NCBI RGD Ensembl Show fit	solute carrier family 45, member 4
chr10_+_56381813 Show fit	0.04	ENSRNOT00000019687	Zbtb4 Links NCBI RGD Ensembl Show fit	zinc finger and BTB domain containing 4
chr8_-_80631873 Show fit	0.04	ENSRNOT00000091661 ENSRNOT00000080662	Unc13c Links NCBI RGD Ensembl Show fit	unc-13 homolog C
chr4_-_81241152 Show fit	0.04	ENSRNOT00000015325 ENSRNOT00000015152	Hnrnpa2b1 Links NCBI RGD Ensembl Show fit	heterogeneous nuclear ribonucleoprotein A2/B1
chr11_-_32858830 Show fit	0.03	ENSRNOT00000002313	Runx1 Links NCBI RGD Ensembl Show fit	runt-related transcription factor 1
chr9_+_118849302 Show fit	0.03	ENSRNOT00000087592	Dlgap1 Links NCBI RGD Ensembl Show fit	DLG associated protein 1
chr2_-_23909016 Show fit	0.03	ENSRNOT00000084044	Scamp1 Links NCBI RGD Ensembl Show fit	secretory carrier membrane protein 1
chr18_-_55916220 Show fit	0.03	ENSRNOT00000025934	Synpo Links NCBI RGD Ensembl Show fit	synaptopodin
chr13_-_36174908 Show fit	0.02	ENSRNOT00000072295	Dbi Links NCBI RGD Ensembl Show fit	diazepam binding inhibitor, acyl-CoA binding protein
chr10_+_54156649 Show fit	0.02	ENSRNOT00000074718	Gas7 Links NCBI RGD Ensembl Show fit	growth arrest specific 7
chr18_+_16146447 Show fit	0.02	ENSRNOT00000022117	Galnt1 Links NCBI RGD Ensembl Show fit	polypeptide N-acetylgalactosaminyltransferase 1
chr14_+_42714315 Show fit	0.02	ENSRNOT00000084095 ENSRNOT00000091449	Phox2b Links NCBI RGD Ensembl Show fit	paired-like homeobox 2b
chr2_-_233743866 Show fit	0.02	ENSRNOT00000087062	Enpep Links NCBI RGD Ensembl Show fit	glutamyl aminopeptidase
chr9_+_2190915 Show fit	0.02	ENSRNOT00000077417	Satb1 Links NCBI RGD Ensembl Show fit	SATB homeobox 1
chr13_-_94859390 Show fit	0.02	ENSRNOT00000005467 ENSRNOT00000079763	AABR07021840.1 Links NCBI RGD Ensembl Show fit
chr4_+_62380914 Show fit	0.01	ENSRNOT00000029845	Tmem140 Links NCBI RGD Ensembl Show fit	transmembrane protein 140
chr6_-_95061174 Show fit	0.01	ENSRNOT00000072262	Rtn1 Links NCBI RGD Ensembl Show fit	reticulon 1
chr3_-_57607683 Show fit	0.01	ENSRNOT00000093222 ENSRNOT00000058524	Mettl8 Links NCBI RGD Ensembl Show fit	methyltransferase like 8
chr3_+_65816569 Show fit	0.01	ENSRNOT00000079672	Ube2e3 Links NCBI RGD Ensembl Show fit	ubiquitin-conjugating enzyme E2E 3
chr13_-_89242443 Show fit	0.01	ENSRNOT00000029202	Atf6 Links NCBI RGD Ensembl Show fit	activating transcription factor 6
chr18_-_59819113 Show fit	0.01	ENSRNOT00000065939	RGD1562699 Links NCBI RGD Ensembl Show fit	RGD1562699
chr2_-_30634243 Show fit	0.01	ENSRNOT00000077537	Marveld2 Links NCBI RGD Ensembl Show fit	MARVEL domain containing 2
chr10_-_16046033 Show fit	0.01	ENSRNOT00000089460	Cpeb4 Links NCBI RGD Ensembl Show fit	cytoplasmic polyadenylation element binding protein 4
chr20_+_12944786 Show fit	0.01	ENSRNOT00000048218	Pcnt Links NCBI RGD Ensembl Show fit	pericentrin
chr4_+_148286858 Show fit	0.01	ENSRNOT00000017294 ENSRNOT00000092294 ENSRNOT00000092477	March8 Links NCBI RGD Ensembl Show fit	membrane associated ring-CH-type finger 8
chr3_-_151258580 Show fit	0.01	ENSRNOT00000026120	Edem2 Links NCBI RGD Ensembl Show fit	ER degradation enhancing alpha-mannosidase like protein 2
chr3_-_46153371 Show fit	0.01	ENSRNOT00000085885	Baz2b Links NCBI RGD Ensembl Show fit	bromodomain adjacent to zinc finger domain, 2B
chr1_-_131460473 Show fit	0.01	ENSRNOT00000084336	Nr2f2 Links NCBI RGD Ensembl Show fit	nuclear receptor subfamily 2, group F, member 2
chr9_-_121713091 Show fit	0.01	ENSRNOT00000073432	Adcyap1 Links NCBI RGD Ensembl Show fit	adenylate cyclase activating polypeptide 1
chr6_-_95890325 Show fit	0.01	ENSRNOT00000050217	LOC690335 Links NCBI RGD Ensembl Show fit	similar to 60S ribosomal protein L23a
chr19_-_17045349 Show fit	0.00	ENSRNOT00000086829	Fto Links NCBI RGD Ensembl Show fit	FTO, alpha-ketoglutarate dependent dioxygenase
chr1_-_134870255 Show fit	0.00	ENSRNOT00000055829	Chd2 Links NCBI RGD Ensembl Show fit	chromodomain helicase DNA binding protein 2
chr11_-_45124423 Show fit	0.00	ENSRNOT00000046383	Filip1l Links NCBI RGD Ensembl Show fit	filamin A interacting protein 1-like
chr1_+_80141630 Show fit	0.00	ENSRNOT00000029552	Opa3 Links NCBI RGD Ensembl Show fit	optic atrophy 3
chr14_-_84820415 Show fit	0.00	ENSRNOT00000057501	Mtmr3 Links NCBI RGD Ensembl Show fit	myotubularin related protein 3
chr7_-_107391184 Show fit	0.00	ENSRNOT00000056793	Tmem71 Links NCBI RGD Ensembl Show fit	transmembrane protein 71
chr9_-_86103158 Show fit	0.00	ENSRNOT00000021528	Cul3 Links NCBI RGD Ensembl Show fit	cullin 3
chr5_+_103251986 Show fit	0.00	ENSRNOT00000008757	Cntln Links NCBI RGD Ensembl Show fit	centlein
chr2_+_239415046 Show fit	0.00	ENSRNOT00000072196	Cxxc4 Links NCBI RGD Ensembl Show fit	CXXC finger protein 4
chr3_-_160038078 Show fit	0.00	ENSRNOT00000013445	Serinc3 Links NCBI RGD Ensembl Show fit	serine incorporator 3

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0002225	positive regulation of antimicrobial peptide production(GO:0002225) positive regulation of antibacterial peptide production(GO:0002803)
0.0	0.1	GO:0021530	spinal cord oligodendrocyte cell differentiation(GO:0021529) spinal cord oligodendrocyte cell fate specification(GO:0021530)
0.0	0.0	GO:0015770	disaccharide transport(GO:0015766) sucrose transport(GO:0015770) oligosaccharide transport(GO:0015772)
0.0	0.0	GO:0021550	medulla oblongata development(GO:0021550)
0.0	0.0	GO:2000872	positive regulation of progesterone secretion(GO:2000872)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0015154	sucrose:proton symporter activity(GO:0008506) sucrose transmembrane transporter activity(GO:0008515) disaccharide transmembrane transporter activity(GO:0015154) oligosaccharide transmembrane transporter activity(GO:0015157)
0.0	0.0	GO:0001069	regulatory region RNA binding(GO:0001069)