GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Foxm1 Links NCBI RGD Ensembl	ENSRNOG00000005936	forkhead box M1

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Foxm1	rn6_v1_chr4_+_161685258_161685283	0.31	6.1e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr18_-_26211445 Show fit	0.07	ENSRNOT00000027739	Nrep Links NCBI RGD Ensembl Show fit	neuronal regeneration related protein
chr20_+_3677474 Show fit	0.05	ENSRNOT00000047663	Mt1m Links NCBI RGD Ensembl Show fit	metallothionein 1M
chr15_-_25505691 Show fit	0.05	ENSRNOT00000074488	LOC100911492 Links NCBI RGD Ensembl Show fit	homeobox protein OTX2-like
chr17_+_78793336 Show fit	0.04	ENSRNOT00000057898	Mt1 Links NCBI RGD Ensembl Show fit	metallothionein 1
chr4_-_59014416 Show fit	0.04	ENSRNOT00000049811	RGD1561636 Links NCBI RGD Ensembl Show fit	similar to 60S ribosomal protein L38
chr6_+_107581608 Show fit	0.03	ENSRNOT00000058101	Acot6 Links NCBI RGD Ensembl Show fit	acyl-CoA thioesterase 6
chr1_-_84732242 Show fit	0.03	ENSRNOT00000025586	LOC102553760 Links NCBI RGD Ensembl Show fit	zinc finger protein 59-like
chr10_+_86399827 Show fit	0.03	ENSRNOT00000009299	Grb7 Links NCBI RGD Ensembl Show fit	growth factor receptor bound protein 7
chr4_+_57855416 Show fit	0.03	ENSRNOT00000029608	Cpa2 Links NCBI RGD Ensembl Show fit	carboxypeptidase A2
chr7_+_122818975 Show fit	0.03	ENSRNOT00000000206	Ep300 Links NCBI RGD Ensembl Show fit	E1A binding protein p300
chr11_-_1836897 Show fit	0.02	ENSRNOT00000050533	Zfp654 Links NCBI RGD Ensembl Show fit	zinc finger protein 654
chr4_+_181103774 Show fit	0.02	ENSRNOT00000084207 ENSRNOT00000055473 ENSRNOT00000077619	Arntl2 Links NCBI RGD Ensembl Show fit	aryl hydrocarbon receptor nuclear translocator-like 2
chr18_-_58097316 Show fit	0.02	ENSRNOT00000088527	AABR07032265.1 Links NCBI RGD Ensembl Show fit
chr18_-_26656879 Show fit	0.02	ENSRNOT00000086729	Epb41l4a Links NCBI RGD Ensembl Show fit	erythrocyte membrane protein band 4.1 like 4A
chr14_-_14192048 Show fit	0.02	ENSRNOT00000060868	Bmp2k Links NCBI RGD Ensembl Show fit	BMP2 inducible kinase
chr6_-_146195819 Show fit	0.02	ENSRNOT00000007625	Sp4 Links NCBI RGD Ensembl Show fit	Sp4 transcription factor
chr10_-_109979712 Show fit	0.02	ENSRNOT00000086042	Dus1l Links NCBI RGD Ensembl Show fit	dihydrouridine synthase 1-like
chr12_+_36638457 Show fit	0.02	ENSRNOT00000085692	Ubc Links NCBI RGD Ensembl Show fit	ubiquitin C
chr1_+_198067066 Show fit	0.02	ENSRNOT00000084824	Sgf29 Links NCBI RGD Ensembl Show fit	SAGA complex associated factor 29
chr1_+_61268248 Show fit	0.02	ENSRNOT00000082730	LOC102552527 Links NCBI RGD Ensembl Show fit	zinc finger protein 420-like
chr3_-_147819571 Show fit	0.02	ENSRNOT00000009840	Trib3 Links NCBI RGD Ensembl Show fit	tribbles pseudokinase 3
chr2_-_165591110 Show fit	0.01	ENSRNOT00000091140	Ift80 Links NCBI RGD Ensembl Show fit	intraflagellar transport 80
chr10_-_27179900 Show fit	0.01	ENSRNOT00000082445	Gabrg2 Links NCBI RGD Ensembl Show fit	gamma-aminobutyric acid type A receptor gamma 2 subunit
chr13_+_78979321 Show fit	0.01	ENSRNOT00000003857	Ankrd45 Links NCBI RGD Ensembl Show fit	ankyrin repeat domain 45
chr6_+_137889261 Show fit	0.01	ENSRNOT00000034995	Tex22 Links NCBI RGD Ensembl Show fit	testis expressed 22
chr5_+_146337491 Show fit	0.01	ENSRNOT00000029395	LOC100912566 Links NCBI RGD Ensembl Show fit	UPF0500 protein C1orf216 homolog
chr18_+_30562178 Show fit	0.01	ENSRNOT00000040998	LOC108348771 Links NCBI RGD Ensembl Show fit	protocadherin beta-16-like
chr3_+_94848823 Show fit	0.01	ENSRNOT00000041362	Ccdc73 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 73
chr6_-_10592454 Show fit	0.01	ENSRNOT00000020600	Pigf Links NCBI RGD Ensembl Show fit	phosphatidylinositol glycan anchor biosynthesis, class F
chr12_+_38459832 Show fit	0.01	ENSRNOT00000090343	Vps33a Links NCBI RGD Ensembl Show fit	VPS33A CORVET/HOPS core subunit
chr10_+_53570989 Show fit	0.01	ENSRNOT00000064764 ENSRNOT00000004516	Tmem220 Links NCBI RGD Ensembl Show fit	transmembrane protein 220
chr1_+_40879747 Show fit	0.01	ENSRNOT00000083702	Akap12 Links NCBI RGD Ensembl Show fit	A-kinase anchoring protein 12
chr7_-_101138860 Show fit	0.01	ENSRNOT00000077137	AABR07058124.4 Links NCBI RGD Ensembl Show fit
chr10_-_75187507 Show fit	0.01	ENSRNOT00000040681	Olr1521 Links NCBI RGD Ensembl Show fit	olfactory receptor 1521
chr6_+_26241672 Show fit	0.01	ENSRNOT00000006543	Supt7l Links NCBI RGD Ensembl Show fit	SPT7-like STAGA complex gamma subunit
chr10_-_62191512 Show fit	0.01	ENSRNOT00000090262	Rpa1 Links NCBI RGD Ensembl Show fit	replication protein A1
chr11_+_64472072 Show fit	0.01	ENSRNOT00000042756	RGD1563835 Links NCBI RGD Ensembl Show fit	similar to ribosomal protein L27
chr15_-_55277713 Show fit	0.01	ENSRNOT00000023037	Itm2b Links NCBI RGD Ensembl Show fit	integral membrane protein 2B
chr3_+_151335292 Show fit	0.01	ENSRNOT00000073642	Mmp24 Links NCBI RGD Ensembl Show fit	matrix metallopeptidase 24
chr16_+_2379480 Show fit	0.01	ENSRNOT00000079215	Dnah12 Links NCBI RGD Ensembl Show fit	dynein, axonemal, heavy chain 12
chr17_+_43661222 Show fit	0.01	ENSRNOT00000022881 ENSRNOT00000022809 ENSRNOT00000022810	Hfe Links NCBI RGD Ensembl Show fit	hemochromatosis
chr1_+_193844538 Show fit	0.01	ENSRNOT00000065311	AC123018.1 Links NCBI RGD Ensembl Show fit
chr17_-_14557792 Show fit	0.01	ENSRNOT00000078166	LOC103690033 Links NCBI RGD Ensembl Show fit	isoleucine--tRNA ligase, cytoplasmic-like
chr15_+_18941431 Show fit	0.01	ENSRNOT00000092092	AABR07017236.1 Links NCBI RGD Ensembl Show fit
chr18_-_61788859 Show fit	0.01	ENSRNOT00000034075 ENSRNOT00000034069	Ccbe1 Links NCBI RGD Ensembl Show fit	collagen and calcium binding EGF domains 1
chr8_+_116332796 Show fit	0.01	ENSRNOT00000021408	Hyal1 Links NCBI RGD Ensembl Show fit	hyaluronoglucosaminidase 1
chr11_-_87924816 Show fit	0.01	ENSRNOT00000031819	Serpind1 Links NCBI RGD Ensembl Show fit	serpin family D member 1
chr1_+_47032113 Show fit	0.01	ENSRNOT00000024412	Tulp4 Links NCBI RGD Ensembl Show fit	tubby like protein 4
chr18_+_30550877 Show fit	0.01	ENSRNOT00000027164	LOC108348201 Links NCBI RGD Ensembl Show fit	protocadherin beta-7-like
chrX_+_124894466 Show fit	0.01	ENSRNOT00000080894	Mcts1 Links NCBI RGD Ensembl Show fit	MCTS1, re-initiation and release factor
chr10_-_87459652 Show fit	0.01	ENSRNOT00000018804	Krt40 Links NCBI RGD Ensembl Show fit	keratin 40
chr16_+_72388880 Show fit	0.01	ENSRNOT00000072459	LOC684871 Links NCBI RGD Ensembl Show fit	similar to Protein C8orf4 (Thyroid cancer protein 1) (TC-1)
chrX_+_124894706 Show fit	0.01	ENSRNOT00000066677	Mcts1 Links NCBI RGD Ensembl Show fit	MCTS1, re-initiation and release factor
chr14_-_6148830 Show fit	0.01	ENSRNOT00000075091 ENSRNOT00000092683	LOC100366030 Links NCBI RGD Ensembl Show fit	rCG37858-like
chr12_+_12638900 Show fit	0.01	ENSRNOT00000001365 ENSRNOT00000080567	Ccz1b Links NCBI RGD Ensembl Show fit	CCZ1 homolog B, vacuolar protein trafficking and biogenesis associated
chr18_-_43945273 Show fit	0.01	ENSRNOT00000088900	Dtwd2 Links NCBI RGD Ensembl Show fit	DTW domain containing 2
chr1_+_177183209 Show fit	0.01	ENSRNOT00000085326	Micalcl Links NCBI RGD Ensembl Show fit	MICAL C-terminal like
chr14_-_6201002 Show fit	0.01	ENSRNOT00000049165	LOC100366030 Links NCBI RGD Ensembl Show fit	rCG37858-like
chr20_-_54517709 Show fit	0.01	ENSRNOT00000076234	Grik2 Links NCBI RGD Ensembl Show fit	glutamate ionotropic receptor kainate type subunit 2
chr8_-_13835168 Show fit	0.01	ENSRNOT00000014435	Med17 Links NCBI RGD Ensembl Show fit	mediator complex subunit 17
chr7_-_101138373 Show fit	0.01	ENSRNOT00000043257	LOC500877 Links NCBI RGD Ensembl Show fit	Ab1-152
chr6_-_52401853 Show fit	0.01	ENSRNOT00000075513	Cdhr3 Links NCBI RGD Ensembl Show fit	cadherin-related family member 3
chr14_+_33108024 Show fit	0.01	ENSRNOT00000090350 ENSRNOT00000067650 ENSRNOT00000077242	Noa1 Links NCBI RGD Ensembl Show fit	nitric oxide associated 1
chr2_+_257568613 Show fit	0.01	ENSRNOT00000066125	Usp33 Links NCBI RGD Ensembl Show fit	ubiquitin specific peptidase 33
chr5_+_25146949 Show fit	0.01	ENSRNOT00000061370	Rad54b Links NCBI RGD Ensembl Show fit	RAD54 homolog B (S. cerevisiae)
chr3_+_51883559 Show fit	0.01	ENSRNOT00000007197	Csrnp3 Links NCBI RGD Ensembl Show fit	cysteine and serine rich nuclear protein 3
chr1_+_247238798 Show fit	0.01	ENSRNOT00000083511	Rcl1 Links NCBI RGD Ensembl Show fit	RNA terminal phosphate cyclase-like 1
chr5_-_24560063 Show fit	0.01	ENSRNOT00000037869	Dpy19l4 Links NCBI RGD Ensembl Show fit	dpy-19-like 4 (C. elegans)
chr5_-_14367898 Show fit	0.01	ENSRNOT00000065402	Atp6v1h Links NCBI RGD Ensembl Show fit	ATPase H+ transporting V1 subunit H
chr7_+_13996966 Show fit	0.01	ENSRNOT00000009615	Olr1087 Links NCBI RGD Ensembl Show fit	olfactory receptor 1087
chr2_+_39314714 Show fit	0.01	ENSRNOT00000083786 ENSRNOT00000047282	Smim15 Links NCBI RGD Ensembl Show fit	small integral membrane protein 15
chr6_+_122603269 Show fit	0.01	ENSRNOT00000005297	Spata7 Links NCBI RGD Ensembl Show fit	spermatogenesis associated 7
chr14_-_33107776 Show fit	0.01	ENSRNOT00000039252	Polr2b Links NCBI RGD Ensembl Show fit	RNA polymerase II subunit B
chr18_-_58423196 Show fit	0.01	ENSRNOT00000025556	Piezo2 Links NCBI RGD Ensembl Show fit	piezo-type mechanosensitive ion channel component 2
chr8_+_60117729 Show fit	0.01	ENSRNOT00000021074	Isl2 Links NCBI RGD Ensembl Show fit	ISL LIM homeobox 2
chr13_-_71276497 Show fit	0.01	ENSRNOT00000029773	Rgsl1 Links NCBI RGD Ensembl Show fit	regulator of G-protein signaling like 1
chr2_+_44289393 Show fit	0.01	ENSRNOT00000018877	Il6st Links NCBI RGD Ensembl Show fit	interleukin 6 signal transducer
chr17_-_53713408 Show fit	0.01	ENSRNOT00000022445	LOC100912163 Links NCBI RGD Ensembl Show fit	AT-rich interactive domain-containing protein 4B-like
chr5_-_14356692 Show fit	0.01	ENSRNOT00000085654	Atp6v1h Links NCBI RGD Ensembl Show fit	ATPase H+ transporting V1 subunit H
chr7_+_121408829 Show fit	0.01	ENSRNOT00000023434	Mgat3 Links NCBI RGD Ensembl Show fit	mannosyl (beta-1,4-)-glycoprotein beta-1,4-N-acetylglucosaminyltransferase
chr2_+_182006242 Show fit	0.00	ENSRNOT00000064091	Fga Links NCBI RGD Ensembl Show fit	fibrinogen alpha chain
chr14_+_106153575 Show fit	0.00	ENSRNOT00000010264	Vps54 Links NCBI RGD Ensembl Show fit	VPS54 GARP complex subunit
chr7_-_123572082 Show fit	0.00	ENSRNOT00000068020	Naga Links NCBI RGD Ensembl Show fit	N-acetyl galactosaminidase, alpha
chr17_-_21705773 Show fit	0.00	ENSRNOT00000078010	Gcnt2 Links NCBI RGD Ensembl Show fit	glucosaminyl (N-acetyl) transferase 2, I-branching enzyme
chr1_-_226924244 Show fit	0.00	ENSRNOT00000028971	Tmem132a Links NCBI RGD Ensembl Show fit	transmembrane protein 132A
chr15_+_61731735 Show fit	0.00	ENSRNOT00000015517	Kbtbd6 Links NCBI RGD Ensembl Show fit	kelch repeat and BTB domain containing 6
chr2_+_189714754 Show fit	0.00	ENSRNOT00000086285	Gatad2b Links NCBI RGD Ensembl Show fit	GATA zinc finger domain containing 2B
chr2_+_240396152 Show fit	0.00	ENSRNOT00000034565	Cenpe Links NCBI RGD Ensembl Show fit	centromere protein E
chr9_+_112360419 Show fit	0.00	ENSRNOT00000086682	Man2a1 Links NCBI RGD Ensembl Show fit	mannosidase, alpha, class 2A, member 1
chr5_+_113592919 Show fit	0.00	ENSRNOT00000011336	Ift74 Links NCBI RGD Ensembl Show fit	intraflagellar transport 74
chr2_+_208900103 Show fit	0.00	ENSRNOT00000055966	Chi3l3 Links NCBI RGD Ensembl Show fit	chitinase 3-like 3
chr10_-_56506446 Show fit	0.00	ENSRNOT00000021357	Acap1 Links NCBI RGD Ensembl Show fit	ArfGAP with coiled-coil, ankyrin repeat and PH domains 1
chr4_-_23119005 Show fit	0.00	ENSRNOT00000048061	Steap4 Links NCBI RGD Ensembl Show fit	STEAP4 metalloreductase
chr3_+_80670140 Show fit	0.00	ENSRNOT00000085614	Ambra1 Links NCBI RGD Ensembl Show fit	autophagy and beclin 1 regulator 1
chr2_+_196295069 Show fit	0.00	ENSRNOT00000088312 ENSRNOT00000028630	Tmod4 Links NCBI RGD Ensembl Show fit	tropomodulin 4
chr20_-_9291610 Show fit	0.00	ENSRNOT00000000650	Glo1 Links NCBI RGD Ensembl Show fit	glyoxalase 1
chr15_-_28313841 Show fit	0.00	ENSRNOT00000085897	Ndrg2 Links NCBI RGD Ensembl Show fit	NDRG family member 2
chr1_+_55219773 Show fit	0.00	ENSRNOT00000041610	RGD1561667 Links NCBI RGD Ensembl Show fit	similar to putative protein kinase
chr18_+_40883224 Show fit	0.00	ENSRNOT00000039733	Lvrn Links NCBI RGD Ensembl Show fit	laeverin
chr6_+_52663112 Show fit	0.00	ENSRNOT00000013842	Atxn7l1 Links NCBI RGD Ensembl Show fit	ataxin 7-like 1
chr19_-_25220010 Show fit	0.00	ENSRNOT00000008786	Dcaf15 Links NCBI RGD Ensembl Show fit	DDB1 and CUL4 associated factor 15
chrX_+_83926513 Show fit	0.00	ENSRNOT00000035274	RGD1561958 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA 2010106E10
chr6_+_136004214 Show fit	0.00	ENSRNOT00000013695	NEWGENE_619861 Links NCBI RGD Ensembl Show fit	eukaryotic translation initiation factor 5
chr9_-_82195722 Show fit	0.00	ENSRNOT00000077085 ENSRNOT00000084276	Cfap65 Links NCBI RGD Ensembl Show fit	cilia and flagella associated protein 65
chr2_+_196013799 Show fit	0.00	ENSRNOT00000084023	Pogz Links NCBI RGD Ensembl Show fit	pogo transposable element with ZNF domain
chr7_-_9711928 Show fit	0.00	ENSRNOT00000011167	Neurod4 Links NCBI RGD Ensembl Show fit	neuronal differentiation 4
chr1_-_167210919 Show fit	0.00	ENSRNOT00000027507	Chrna10 Links NCBI RGD Ensembl Show fit	cholinergic receptor nicotinic alpha 10 subunit
chr10_+_86599220 Show fit	0.00	ENSRNOT00000039836	Psmd3 Links NCBI RGD Ensembl Show fit	proteasome 26S subunit, non-ATPase 3
chr3_-_173944396 Show fit	0.00	ENSRNOT00000079019	Sycp2 Links NCBI RGD Ensembl Show fit	synaptonemal complex protein 2
chr20_+_7330250 Show fit	0.00	ENSRNOT00000090993	LOC499407 Links NCBI RGD Ensembl Show fit	LRRGT00097
chr6_-_72750170 Show fit	0.00	ENSRNOT00000035309	Heatr5a Links NCBI RGD Ensembl Show fit	HEAT repeat containing 5A
chr13_-_78521911 Show fit	0.00	ENSRNOT00000087506	Rabgap1l Links NCBI RGD Ensembl Show fit	RAB GTPase activating protein 1-like
chrX_-_111102464 Show fit	0.00	ENSRNOT00000084176	Ripply1 Links NCBI RGD Ensembl Show fit	ripply transcriptional repressor 1
chr4_-_60548021 Show fit	0.00	ENSRNOT00000065546	AABR07060165.1 Links NCBI RGD Ensembl Show fit
chr10_-_88144468 Show fit	0.00	ENSRNOT00000084619	Ka11 Links NCBI RGD Ensembl Show fit	type I keratin KA11
chr1_+_107262659 Show fit	0.00	ENSRNOT00000022499	Gas2 Links NCBI RGD Ensembl Show fit	growth arrest-specific 2
chr10_-_27179254 Show fit	0.00	ENSRNOT00000004619	Gabrg2 Links NCBI RGD Ensembl Show fit	gamma-aminobutyric acid type A receptor gamma 2 subunit
chr10_+_47065850 Show fit	0.00	ENSRNOT00000077868 ENSRNOT00000066250	Dhrs7b Links NCBI RGD Ensembl Show fit	dehydrogenase/reductase 7B
chr11_-_72814850 Show fit	0.00	ENSRNOT00000091575	LOC100911374 Links NCBI RGD Ensembl Show fit	UBX domain-containing protein 7-like
chr9_+_46840992 Show fit	0.00	ENSRNOT00000019415	Il1r2 Links NCBI RGD Ensembl Show fit	interleukin 1 receptor type 2
chr16_+_8207223 Show fit	0.00	ENSRNOT00000026751	Oxnad1 Links NCBI RGD Ensembl Show fit	oxidoreductase NAD-binding domain containing 1
chr18_+_62850588 Show fit	0.00	ENSRNOT00000025172	Gnal Links NCBI RGD Ensembl Show fit	G protein subunit alpha L
chr19_-_53754602 Show fit	0.00	ENSRNOT00000035651	Fam92b Links NCBI RGD Ensembl Show fit	family with sequence similarity 92, member B
chr5_-_28164326 Show fit	0.00	ENSRNOT00000088165	Slc26a7 Links NCBI RGD Ensembl Show fit	solute carrier family 26 member 7
chr14_+_8080275 Show fit	0.00	ENSRNOT00000065965 ENSRNOT00000092542	Mapk10 Links NCBI RGD Ensembl Show fit	mitogen activated protein kinase 10

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