GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Foxo3 Links NCBI RGD Ensembl	ENSRNOG00000000299	forkhead box O3

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Foxo3	rn6_v1_chr20_+_46428124_46428124	0.98	3.1e-03	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr10_-_71849293 Show fit	0.20	ENSRNOT00000003799	Lhx1 Links NCBI RGD Ensembl Show fit	LIM homeobox 1
chr3_+_131351587 Show fit	0.16	ENSRNOT00000010835	Btbd3 Links NCBI RGD Ensembl Show fit	BTB domain containing 3
chr10_-_46720907 Show fit	0.14	ENSRNOT00000083093 ENSRNOT00000067866	Tom1l2 Links NCBI RGD Ensembl Show fit	target of myb1 like 2 membrane trafficking protein
chr20_+_46519431 Show fit	0.14	ENSRNOT00000077765	AABR07045405.1 Links NCBI RGD Ensembl Show fit
chr10_+_86399827 Show fit	0.13	ENSRNOT00000009299	Grb7 Links NCBI RGD Ensembl Show fit	growth factor receptor bound protein 7
chr20_+_46429222 Show fit	0.13	ENSRNOT00000076818	Foxo3 Links NCBI RGD Ensembl Show fit	forkhead box O3
chr18_-_5314511 Show fit	0.11	ENSRNOT00000022637 ENSRNOT00000079682	Zfp521 Links NCBI RGD Ensembl Show fit	zinc finger protein 521
chr18_+_27558089 Show fit	0.10	ENSRNOT00000027499	Fam53c Links NCBI RGD Ensembl Show fit	family with sequence similarity 53, member C
chr7_-_120770435 Show fit	0.10	ENSRNOT00000077000	Ddx17 Links NCBI RGD Ensembl Show fit	DEAD-box helicase 17
chr4_-_115516296 Show fit	0.10	ENSRNOT00000019399	Paip2b Links NCBI RGD Ensembl Show fit	poly(A) binding protein interacting protein 2B
chr14_+_87448692 Show fit	0.10	ENSRNOT00000077177	Igfbp1 Links NCBI RGD Ensembl Show fit	insulin-like growth factor binding protein 1
chr3_+_61658245 Show fit	0.09	ENSRNOT00000033511	Hoxd3 Links NCBI RGD Ensembl Show fit	homeo box D3
chr16_-_15798974 Show fit	0.09	ENSRNOT00000046842 ENSRNOT00000065946	Nrg3 Links NCBI RGD Ensembl Show fit	neuregulin 3
chr3_+_116899878 Show fit	0.08	ENSRNOT00000090802 ENSRNOT00000066101	Sema6d Links NCBI RGD Ensembl Show fit	semaphorin 6D
chr2_-_258997138 Show fit	0.08	ENSRNOT00000045020 ENSRNOT00000042256	Adgrl2 Links NCBI RGD Ensembl Show fit	adhesion G protein-coupled receptor L2
chr2_+_127525285 Show fit	0.08	ENSRNOT00000093247	Intu Links NCBI RGD Ensembl Show fit	inturned planar cell polarity protein
chr10_+_11393103 Show fit	0.08	ENSRNOT00000076022	Adcy9 Links NCBI RGD Ensembl Show fit	adenylate cyclase 9
chr14_+_104191517 Show fit	0.08	ENSRNOT00000006573	Spred2 Links NCBI RGD Ensembl Show fit	sprouty-related, EVH1 domain containing 2
chr1_+_88750462 Show fit	0.07	ENSRNOT00000028247	LOC108348122 Links NCBI RGD Ensembl Show fit	CAP-Gly domain-containing linker protein 3
chr15_-_108120279 Show fit	0.07	ENSRNOT00000090572	Dock9 Links NCBI RGD Ensembl Show fit	dedicator of cytokinesis 9
chr3_+_79498179 Show fit	0.07	ENSRNOT00000030750	Nup160 Links NCBI RGD Ensembl Show fit	nucleoporin 160
chr2_-_30634243 Show fit	0.07	ENSRNOT00000077537	Marveld2 Links NCBI RGD Ensembl Show fit	MARVEL domain containing 2
chr1_-_124803363 Show fit	0.06	ENSRNOT00000066380	Klf13 Links NCBI RGD Ensembl Show fit	Kruppel-like factor 13
chrX_+_65040934 Show fit	0.06	ENSRNOT00000044006	Zc3h12b Links NCBI RGD Ensembl Show fit	zinc finger CCCH-type containing 12B
chr5_+_150787043 Show fit	0.06	ENSRNOT00000082945	Eya3 Links NCBI RGD Ensembl Show fit	EYA transcriptional coactivator and phosphatase 3
chr18_-_58097316 Show fit	0.06	ENSRNOT00000088527	AABR07032265.1 Links NCBI RGD Ensembl Show fit
chr3_-_94419048 Show fit	0.05	ENSRNOT00000015775	Hipk3 Links NCBI RGD Ensembl Show fit	homeodomain interacting protein kinase 3
chr2_-_3124543 Show fit	0.05	ENSRNOT00000036547	Fam81b Links NCBI RGD Ensembl Show fit	family with sequence similarity 81, member B
chr15_+_2374582 Show fit	0.05	ENSRNOT00000019644	Zfp503 Links NCBI RGD Ensembl Show fit	zinc finger protein 503
chr3_-_37480984 Show fit	0.05	ENSRNOT00000030373	Nmi Links NCBI RGD Ensembl Show fit	N-myc (and STAT) interactor
chr3_-_94418711 Show fit	0.04	ENSRNOT00000089554	Hipk3 Links NCBI RGD Ensembl Show fit	homeodomain interacting protein kinase 3
chr16_+_27399467 Show fit	0.04	ENSRNOT00000065642	Tll1 Links NCBI RGD Ensembl Show fit	tolloid-like 1
chr2_+_262914327 Show fit	0.04	ENSRNOT00000029312	Negr1 Links NCBI RGD Ensembl Show fit	neuronal growth regulator 1
chr6_-_44363915 Show fit	0.04	ENSRNOT00000085925	Id2 Links NCBI RGD Ensembl Show fit	inhibitor of DNA binding 2, HLH protein
chr7_+_59326518 Show fit	0.04	ENSRNOT00000085231	Ptprb Links NCBI RGD Ensembl Show fit	protein tyrosine phosphatase, receptor type, B
chr6_-_67084234 Show fit	0.03	ENSRNOT00000050372	Nova1 Links NCBI RGD Ensembl Show fit	NOVA alternative splicing regulator 1
chr7_-_107775712 Show fit	0.03	ENSRNOT00000010811 ENSRNOT00000093459	Ndrg1 Links NCBI RGD Ensembl Show fit	N-myc downstream regulated 1
chr3_+_176479335 Show fit	0.03	ENSRNOT00000055038 ENSRNOT00000082267	Arfgap1 Links NCBI RGD Ensembl Show fit	ADP-ribosylation factor GTPase activating protein 1
chr5_+_124690214 Show fit	0.03	ENSRNOT00000011237	Plpp3 Links NCBI RGD Ensembl Show fit	phospholipid phosphatase 3
chr2_-_208225888 Show fit	0.03	ENSRNOT00000054860	AABR07012775.1 Links NCBI RGD Ensembl Show fit
chr7_-_123767797 Show fit	0.02	ENSRNOT00000012699	Tcf20 Links NCBI RGD Ensembl Show fit	transcription factor 20
chr15_+_108956448 Show fit	0.02	ENSRNOT00000046324	AC123185.1 Links NCBI RGD Ensembl Show fit
chr9_-_43454078 Show fit	0.02	ENSRNOT00000023550	Tmem131 Links NCBI RGD Ensembl Show fit	transmembrane protein 131
chr20_-_54517709 Show fit	0.02	ENSRNOT00000076234	Grik2 Links NCBI RGD Ensembl Show fit	glutamate ionotropic receptor kainate type subunit 2
chr2_-_188596222 Show fit	0.02	ENSRNOT00000027920	Efna1 Links NCBI RGD Ensembl Show fit	ephrin A1
chr6_-_51018050 Show fit	0.01	ENSRNOT00000082691	Gpr22 Links NCBI RGD Ensembl Show fit	G protein-coupled receptor 22
chr4_+_157524423 Show fit	0.01	ENSRNOT00000036654	Zfp384 Links NCBI RGD Ensembl Show fit	zinc finger protein 384
chr5_+_113725717 Show fit	0.01	ENSRNOT00000032248	Tek Links NCBI RGD Ensembl Show fit	TEK receptor tyrosine kinase
chr6_-_27487284 Show fit	0.01	ENSRNOT00000084344	Selenoi Links NCBI RGD Ensembl Show fit	selenoprotein I
chr18_-_74059533 Show fit	0.01	ENSRNOT00000038767	RGD1308601 Links NCBI RGD Ensembl Show fit	similar to hypothetical protein
chr1_+_190671696 Show fit	0.01	ENSRNOT00000084934	AABR07005633.1 Links NCBI RGD Ensembl Show fit
chr11_+_73693814 Show fit	0.01	ENSRNOT00000081081 ENSRNOT00000002354 ENSRNOT00000090940	Lsg1 Links NCBI RGD Ensembl Show fit	large 60S subunit nuclear export GTPase 1
chr6_+_135156984 Show fit	0.01	ENSRNOT00000009709 ENSRNOT00000082595	Wdr20 Links NCBI RGD Ensembl Show fit	WD repeat domain 20
chr9_-_65693822 Show fit	0.01	ENSRNOT00000038431	Als2cr12 Links NCBI RGD Ensembl Show fit	amyotrophic lateral sclerosis 2 chromosome region, candidate 12
chr20_+_45458558 Show fit	0.01	ENSRNOT00000000713	Cdk19 Links NCBI RGD Ensembl Show fit	cyclin-dependent kinase 19
chr10_-_87459652 Show fit	0.00	ENSRNOT00000018804	Krt40 Links NCBI RGD Ensembl Show fit	keratin 40
chr10_-_25845634 Show fit	0.00	ENSRNOT00000004269	Mat2b Links NCBI RGD Ensembl Show fit	methionine adenosyltransferase 2B
chr10_-_87335823 Show fit	0.00	ENSRNOT00000079297	Krt12 Links NCBI RGD Ensembl Show fit	keratin 12
chr2_+_34255305 Show fit	0.00	ENSRNOT00000016649 ENSRNOT00000016596	Trim23 Links NCBI RGD Ensembl Show fit	tripartite motif-containing 23
chr9_+_42315682 Show fit	0.00	ENSRNOT00000071995	AABR07067388.1 Links NCBI RGD Ensembl Show fit
chr13_+_89597138 Show fit	0.00	ENSRNOT00000004662	Apoa2 Links NCBI RGD Ensembl Show fit	apolipoprotein A2

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.2	GO:0060066	metanephric part of ureteric bud development(GO:0035502) oviduct development(GO:0060066)
0.0	0.1	GO:0021615	glossopharyngeal nerve morphogenesis(GO:0021615)
0.0	0.1	GO:0021842	directional guidance of interneurons involved in migration from the subpallium to the cortex(GO:0021840) chemorepulsion involved in interneuron migration from the subpallium to the cortex(GO:0021842)
0.0	0.1	GO:0071386	cellular response to corticosterone stimulus(GO:0071386)
0.0	0.0	GO:0001966	thigmotaxis(GO:0001966)
0.0	0.0	GO:0070315	G1 to G0 transition involved in cell differentiation(GO:0070315)
0.0	0.0	GO:0032687	negative regulation of interferon-alpha production(GO:0032687)
0.0	0.1	GO:0034063	stress granule assembly(GO:0034063)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0061689	tricellular tight junction(GO:0061689)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0031995	insulin-like growth factor II binding(GO:0031995)
0.0	0.1	GO:0005173	stem cell factor receptor binding(GO:0005173)
0.0	0.1	GO:0097001	ceramide binding(GO:0097001)