GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Foxo4 Links NCBI RGD Ensembl	ENSRNOG00000033316	forkhead box O4

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Foxo4	rn6_v1_chrX_+_71155601_71155601	-0.38	5.3e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr10_-_90049112 Show fit	0.10	ENSRNOT00000028323	Pyy Links NCBI RGD Ensembl Show fit	peptide YY (mapped)
chr12_-_17186679 Show fit	0.10	ENSRNOT00000001730	Uncx Links NCBI RGD Ensembl Show fit	UNC homeobox
chr1_+_168957460 Show fit	0.09	ENSRNOT00000090745	LOC103694857 Links NCBI RGD Ensembl Show fit	hemoglobin subunit beta-2
chr1_-_168972725 Show fit	0.09	ENSRNOT00000090422	Hbb Links NCBI RGD Ensembl Show fit	hemoglobin subunit beta
chr1_+_168945449 Show fit	0.08	ENSRNOT00000087661 ENSRNOT00000019913	LOC103694855 Links NCBI RGD Ensembl Show fit	hemoglobin subunit beta-2-like
chr7_+_144052061 Show fit	0.08	ENSRNOT00000020103 ENSRNOT00000091378	Amhr2 Links NCBI RGD Ensembl Show fit	anti-Mullerian hormone receptor type 2
chr5_-_139933764 Show fit	0.06	ENSRNOT00000015278	LOC680700 Links NCBI RGD Ensembl Show fit	similar to ribosomal protein L10a
chr3_+_2877293 Show fit	0.05	ENSRNOT00000061855	Lcn5 Links NCBI RGD Ensembl Show fit	lipocalin 5
chr14_+_83510640 Show fit	0.05	ENSRNOT00000089928 ENSRNOT00000082242 ENSRNOT00000025378	Patz1 Links NCBI RGD Ensembl Show fit	POZ (BTB) and AT hook containing zinc finger 1
chr1_+_189665976 Show fit	0.04	ENSRNOT00000033673	Lyrm1 Links NCBI RGD Ensembl Show fit	LYR motif containing 1
chr3_+_122544788 Show fit	0.04	ENSRNOT00000063828	Tgm3 Links NCBI RGD Ensembl Show fit	transglutaminase 3
chr3_+_91870208 Show fit	0.04	ENSRNOT00000040249	Rpl21 Links NCBI RGD Ensembl Show fit	ribosomal protein L21
chr4_-_70996395 Show fit	0.03	ENSRNOT00000021485	Kel Links NCBI RGD Ensembl Show fit	Kell blood group, metallo-endopeptidase
chr20_+_26534535 Show fit	0.03	ENSRNOT00000000423	Tmem167b Links NCBI RGD Ensembl Show fit	transmembrane protein 167B
chr1_+_226252226 Show fit	0.03	ENSRNOT00000039369	AABR07006258.1 Links NCBI RGD Ensembl Show fit
chr1_+_215609645 Show fit	0.03	ENSRNOT00000076140 ENSRNOT00000027487	Tnni2 Links NCBI RGD Ensembl Show fit	troponin I2, fast skeletal type
chr7_-_66172360 Show fit	0.03	ENSRNOT00000005537	Fam19a2 Links NCBI RGD Ensembl Show fit	family with sequence similarity 19 member A2, C-C motif chemokine like
chr4_+_159622404 Show fit	0.02	ENSRNOT00000078299	Fgf23 Links NCBI RGD Ensembl Show fit	fibroblast growth factor 23
chr15_-_28696122 Show fit	0.02	ENSRNOT00000060467	Rab2b Links NCBI RGD Ensembl Show fit	RAB2B, member RAS oncogene family
chr9_+_67774150 Show fit	0.02	ENSRNOT00000091060	Icos Links NCBI RGD Ensembl Show fit	inducible T-cell co-stimulator
chr1_-_80483487 Show fit	0.02	ENSRNOT00000074418	Gemin7 Links NCBI RGD Ensembl Show fit	gem (nuclear organelle) associated protein 7
chr10_-_13081136 Show fit	0.02	ENSRNOT00000005718	Kremen2 Links NCBI RGD Ensembl Show fit	kringle containing transmembrane protein 2
chr14_+_88549947 Show fit	0.02	ENSRNOT00000086177	Hnrnpc Links NCBI RGD Ensembl Show fit	heterogeneous nuclear ribonucleoprotein C
chr3_-_111037166 Show fit	0.02	ENSRNOT00000017070	Ppp1r14d Links NCBI RGD Ensembl Show fit	protein phosphatase 1, regulatory (inhibitor) subunit 14D
chr7_+_23913830 Show fit	0.02	ENSRNOT00000006570	Rtcb Links NCBI RGD Ensembl Show fit	RNA 2',3'-cyclic phosphate and 5'-OH ligase
chr6_+_73345392 Show fit	0.02	ENSRNOT00000088378	Arhgap5 Links NCBI RGD Ensembl Show fit	Rho GTPase activating protein 5
chr10_-_18090932 Show fit	0.01	ENSRNOT00000064744 ENSRNOT00000006591	Npm1 Links NCBI RGD Ensembl Show fit	nucleophosmin 1
chr3_+_9643047 Show fit	0.01	ENSRNOT00000035805	Ntmt1 Links NCBI RGD Ensembl Show fit	N-terminal Xaa-Pro-Lys N-methyltransferase 1
chr1_-_82236179 Show fit	0.01	ENSRNOT00000027845	Cnfn Links NCBI RGD Ensembl Show fit	cornifelin
chr1_-_216828581 Show fit	0.01	ENSRNOT00000066943 ENSRNOT00000088856	Tnfrsf26 Links NCBI RGD Ensembl Show fit	tumor necrosis factor receptor superfamily, member 26
chr19_-_869490 Show fit	0.01	ENSRNOT00000080433	Cmtm1 Links NCBI RGD Ensembl Show fit	CKLF-like MARVEL transmembrane domain containing 1
chr19_+_9436210 Show fit	0.01	ENSRNOT00000074845	LOC100910721 Links NCBI RGD Ensembl Show fit	60S ribosomal protein L26-like
chr5_+_148577332 Show fit	0.01	ENSRNOT00000016325	Snrnp40 Links NCBI RGD Ensembl Show fit	small nuclear ribonucleoprotein U5 subunit 40
chr4_+_71675383 Show fit	0.01	ENSRNOT00000051265	Clcn1 Links NCBI RGD Ensembl Show fit	chloride voltage-gated channel 1
chr12_+_24180937 Show fit	0.01	ENSRNOT00000030497	Hip1 Links NCBI RGD Ensembl Show fit	huntingtin interacting protein 1
chr2_-_187426375 Show fit	0.01	ENSRNOT00000025986	Naxe Links NCBI RGD Ensembl Show fit	NAD(P)HX epimerase
chr15_-_51834030 Show fit	0.01	ENSRNOT00000024895	Ccar2 Links NCBI RGD Ensembl Show fit	cell cycle and apoptosis regulator 2
chr9_+_50966766 Show fit	0.01	ENSRNOT00000076636	Ercc5 Links NCBI RGD Ensembl Show fit	ERCC excision repair 5, endonuclease
chr19_+_46733633 Show fit	0.01	ENSRNOT00000016307	Clec3a Links NCBI RGD Ensembl Show fit	C-type lectin domain family 3, member A
chr16_-_8207464 Show fit	0.01	ENSRNOT00000026742	Dph3 Links NCBI RGD Ensembl Show fit	diphthamide biosynthesis 3
chr20_-_157861 Show fit	0.01	ENSRNOT00000084461	RT1-CE10 Links NCBI RGD Ensembl Show fit	RT1 class I, locus CE10
chr4_-_66624912 Show fit	0.01	ENSRNOT00000064891	Hipk2 Links NCBI RGD Ensembl Show fit	homeodomain interacting protein kinase 2
chr14_+_83510278 Show fit	0.01	ENSRNOT00000081161	Patz1 Links NCBI RGD Ensembl Show fit	POZ (BTB) and AT hook containing zinc finger 1
chr3_+_11657370 Show fit	0.01	ENSRNOT00000073840	Ak1 Links NCBI RGD Ensembl Show fit	adenylate kinase 1
chr8_+_94693290 Show fit	0.01	ENSRNOT00000013908	Cyb5r4 Links NCBI RGD Ensembl Show fit	cytochrome b5 reductase 4
chr20_+_5414448 Show fit	0.01	ENSRNOT00000078972 ENSRNOT00000080900	RT1-A1 Links NCBI RGD Ensembl Show fit	RT1 class Ia, locus A1
chr5_-_148577292 Show fit	0.00	ENSRNOT00000017156	Zcchc17 Links NCBI RGD Ensembl Show fit	zinc finger CCHC-type containing 17
chr10_+_93811350 Show fit	0.00	ENSRNOT00000077280	Tanc2 Links NCBI RGD Ensembl Show fit	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
chr6_+_126623015 Show fit	0.00	ENSRNOT00000010672	Tmem251 Links NCBI RGD Ensembl Show fit	transmembrane protein 251
chr10_+_93811505 Show fit	0.00	ENSRNOT00000081937	Tanc2 Links NCBI RGD Ensembl Show fit	tetratricopeptide repeat, ankyrin repeat and coiled-coil containing 2
chr10_+_63098116 Show fit	0.00	ENSRNOT00000030749	Nsrp1 Links NCBI RGD Ensembl Show fit	nuclear speckle splicing regulatory protein 1
chr3_+_149144795 Show fit	0.00	ENSRNOT00000015482	Dnmt3b Links NCBI RGD Ensembl Show fit	DNA methyltransferase 3 beta
chr9_+_42620006 Show fit	0.00	ENSRNOT00000019966	Hs6st1 Links NCBI RGD Ensembl Show fit	heparan sulfate 6-O-sulfotransferase 1

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.3	GO:0015671	oxygen transport(GO:0015671)
0.0	0.1	GO:0035726	common myeloid progenitor cell proliferation(GO:0035726)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.3	GO:0005833	hemoglobin complex(GO:0005833)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0031720	haptoglobin binding(GO:0031720)
0.0	0.2	GO:0005344	oxygen transporter activity(GO:0005344)