GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Foxq1 Links NCBI RGD Ensembl	ENSRNOG00000021752	Foxq1

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr7_+_28654733 Show fit	2.05	ENSRNOT00000006174	Pmch Links NCBI RGD Ensembl Show fit	pro-melanin-concentrating hormone
chr20_+_5094468 Show fit	1.03	ENSRNOT00000078576	Abhd16a Links NCBI RGD Ensembl Show fit	abhydrolase domain containing 16A
chr5_+_50381244 Show fit	0.66	ENSRNOT00000012385	Cga Links NCBI RGD Ensembl Show fit	glycoprotein hormones, alpha polypeptide
chr1_-_124803363 Show fit	0.25	ENSRNOT00000066380	Klf13 Links NCBI RGD Ensembl Show fit	Kruppel-like factor 13
chr17_-_13393243 Show fit	0.22	ENSRNOT00000018252	Gadd45g Links NCBI RGD Ensembl Show fit	growth arrest and DNA-damage-inducible, gamma
chr2_+_127525285 Show fit	0.15	ENSRNOT00000093247	Intu Links NCBI RGD Ensembl Show fit	inturned planar cell polarity protein
chr2_-_256154584 Show fit	0.13	ENSRNOT00000072487	AABR07013776.1 Links NCBI RGD Ensembl Show fit
chr7_-_138707221 Show fit	0.12	ENSRNOT00000009199	Amigo2 Links NCBI RGD Ensembl Show fit	adhesion molecule with Ig like domain 2
chr1_-_91588609 Show fit	0.11	ENSRNOT00000050931	Snrpg Links NCBI RGD Ensembl Show fit	small nuclear ribonucleoprotein polypeptide G
chr7_-_144272578 Show fit	0.10	ENSRNOT00000020676	Atp5g2 Links NCBI RGD Ensembl Show fit	ATP synthase, H+ transporting, mitochondrial Fo complex, subunit C2 (subunit 9)
chr3_+_134440195 Show fit	0.10	ENSRNOT00000072928	AABR07054000.1 Links NCBI RGD Ensembl Show fit
chr16_-_48437223 Show fit	0.09	ENSRNOT00000013005 ENSRNOT00000059401	Enpp6 Links NCBI RGD Ensembl Show fit	ectonucleotide pyrophosphatase/phosphodiesterase 6
chr14_-_6900733 Show fit	0.08	ENSRNOT00000061224	Dmp1 Links NCBI RGD Ensembl Show fit	dentin matrix acidic phosphoprotein 1
chr1_+_164380577 Show fit	0.07	ENSRNOT00000055321	Gdpd5 Links NCBI RGD Ensembl Show fit	glycerophosphodiester phosphodiesterase domain containing 5
chr15_-_61873406 Show fit	0.07	ENSRNOT00000045115	LOC100360244 Links NCBI RGD Ensembl Show fit	LRRGT00053-like
chr8_+_54993859 Show fit	0.07	ENSRNOT00000013093	Il18 Links NCBI RGD Ensembl Show fit	interleukin 18
chr16_-_68700296 Show fit	0.07	ENSRNOT00000060162	AABR07026236.1 Links NCBI RGD Ensembl Show fit
chr15_-_95514259 Show fit	0.07	ENSRNOT00000038433	Slitrk6 Links NCBI RGD Ensembl Show fit	SLIT and NTRK-like family, member 6
chr11_-_32550539 Show fit	0.06	ENSRNOT00000002715	Rcan1 Links NCBI RGD Ensembl Show fit	regulator of calcineurin 1
chr2_+_211320420 Show fit	0.06	ENSRNOT00000027504	RGD1309139 Links NCBI RGD Ensembl Show fit	similar to CG5435-PA
chr1_-_156327352 Show fit	0.06	ENSRNOT00000074282	LOC100911776 Links NCBI RGD Ensembl Show fit	coiled-coil domain-containing protein 89-like
chr13_-_72789841 Show fit	0.06	ENSRNOT00000004694	Mr1 Links NCBI RGD Ensembl Show fit	major histocompatibility complex, class I-related
chr3_-_72219246 Show fit	0.06	ENSRNOT00000009903	Smtnl1 Links NCBI RGD Ensembl Show fit	smoothelin-like 1
chr10_-_66873948 Show fit	0.06	ENSRNOT00000039261	Evi2a Links NCBI RGD Ensembl Show fit	ecotropic viral integration site 2A
chr20_+_29655226 Show fit	0.06	ENSRNOT00000089059	Spock2 Links NCBI RGD Ensembl Show fit	SPARC/osteonectin, cwcv and kazal like domains proteoglycan 2
chr4_+_66670618 Show fit	0.06	ENSRNOT00000010796	Tbxas1 Links NCBI RGD Ensembl Show fit	thromboxane A synthase 1
chrX_-_77559348 Show fit	0.06	ENSRNOT00000047823	Fndc3c1 Links NCBI RGD Ensembl Show fit	fibronectin type III domain containing 3C1
chr11_-_28527890 Show fit	0.06	ENSRNOT00000002138	Cldn8 Links NCBI RGD Ensembl Show fit	claudin 8
chr1_+_42121636 Show fit	0.06	ENSRNOT00000025616	Myct1 Links NCBI RGD Ensembl Show fit	myc target 1
chr3_-_2845593 Show fit	0.06	ENSRNOT00000067479	Tmem141 Links NCBI RGD Ensembl Show fit	transmembrane protein 141
chr12_-_19254527 Show fit	0.05	ENSRNOT00000089349	AABR07035541.3 Links NCBI RGD Ensembl Show fit
chrX_+_83678339 Show fit	0.05	ENSRNOT00000005997	Apool Links NCBI RGD Ensembl Show fit	apolipoprotein O-like
chr15_+_4882947 Show fit	0.05	ENSRNOT00000049255 ENSRNOT00000092002	RGD1304704 Links NCBI RGD Ensembl Show fit	similar to Hypothetical protein CGI-99
chr16_-_8350067 Show fit	0.05	ENSRNOT00000026932	LOC100362432 Links NCBI RGD Ensembl Show fit	mitochondrial import inner membrane translocase subunit Tim23-like
chr1_+_140601791 Show fit	0.05	ENSRNOT00000091588	Isg20 Links NCBI RGD Ensembl Show fit	interferon stimulated exonuclease gene 20
chrX_+_35869538 Show fit	0.04	ENSRNOT00000058947	Ppef1 Links NCBI RGD Ensembl Show fit	protein phosphatase with EF-hand domain 1
chr2_+_234375315 Show fit	0.04	ENSRNOT00000071270	LOC102549542 Links NCBI RGD Ensembl Show fit	elongation of very long chain fatty acids protein 6-like
chr11_+_86421106 Show fit	0.04	ENSRNOT00000002599	LOC100362453 Links NCBI RGD Ensembl Show fit	serine/threonine-protein phosphatase 2A catalytic subunit alpha-like
chr8_+_49621568 Show fit	0.04	ENSRNOT00000021949	Tmprss13 Links NCBI RGD Ensembl Show fit	transmembrane protease, serine 13
chr3_+_147511563 Show fit	0.04	ENSRNOT00000006828	Slc52a3 Links NCBI RGD Ensembl Show fit	solute carrier family 52 member 3
chr7_+_44009069 Show fit	0.04	ENSRNOT00000005523	Mgat4c Links NCBI RGD Ensembl Show fit	MGAT4 family, member C
chr16_+_6434468 Show fit	0.04	ENSRNOT00000012906	LOC108348453 Links NCBI RGD Ensembl Show fit	calsequestrin-1-like
chr13_+_51240911 Show fit	0.04	ENSRNOT00000005551	Adipor1 Links NCBI RGD Ensembl Show fit	adiponectin receptor 1
chr4_-_159287193 Show fit	0.04	ENSRNOT00000080139	Kcna6 Links NCBI RGD Ensembl Show fit	potassium voltage-gated channel subfamily A member 6
chr13_-_49487892 Show fit	0.04	ENSRNOT00000044972	Nfasc Links NCBI RGD Ensembl Show fit	neurofascin
chr8_+_117347029 Show fit	0.04	ENSRNOT00000047717	Impdh2 Links NCBI RGD Ensembl Show fit	inosine monophosphate dehydrogenase 2
chr17_+_49417067 Show fit	0.04	ENSRNOT00000090024	Pou6f2 Links NCBI RGD Ensembl Show fit	POU domain, class 6, transcription factor 2
chr12_+_10636275 Show fit	0.04	ENSRNOT00000001285	Cyp3a18 Links NCBI RGD Ensembl Show fit	cytochrome P450, family 3, subfamily a, polypeptide 18
chr4_+_71512695 Show fit	0.04	ENSRNOT00000037220	Tas2r139 Links NCBI RGD Ensembl Show fit	taste receptor, type 2, member 139
chr2_-_100249811 Show fit	0.04	ENSRNOT00000086760	Hnf4g Links NCBI RGD Ensembl Show fit	hepatocyte nuclear factor 4, gamma
chr10_-_34439470 Show fit	0.04	ENSRNOT00000072081	Btnl9 Links NCBI RGD Ensembl Show fit	butyrophilin-like 9
chr14_+_99529284 Show fit	0.04	ENSRNOT00000006897 ENSRNOT00000067134	Vstm2a Links NCBI RGD Ensembl Show fit	V-set and transmembrane domain containing 2A
chr3_+_147511406 Show fit	0.03	ENSRNOT00000082438	Slc52a3 Links NCBI RGD Ensembl Show fit	solute carrier family 52 member 3
chr20_+_27173213 Show fit	0.03	ENSRNOT00000073617	Hnrnph3 Links NCBI RGD Ensembl Show fit	heterogeneous nuclear ribonucleoprotein H3
chrX_+_14578264 Show fit	0.03	ENSRNOT00000038994	Cybb Links NCBI RGD Ensembl Show fit	cytochrome b-245 beta chain
chr14_+_91557601 Show fit	0.03	ENSRNOT00000038733	RGD1309870 Links NCBI RGD Ensembl Show fit	hypothetical LOC289778
chrX_+_121612952 Show fit	0.03	ENSRNOT00000022122	AABR07041179.1 Links NCBI RGD Ensembl Show fit
chr5_-_60658521 Show fit	0.03	ENSRNOT00000092866 ENSRNOT00000093024 ENSRNOT00000016875	Tomm5 Links NCBI RGD Ensembl Show fit Fbxo10 Links NCBI RGD Ensembl Show fit	translocase of outer mitochondrial membrane 5 F-box protein 10
chr6_-_145777767 Show fit	0.03	ENSRNOT00000046799	Rpl32 Links NCBI RGD Ensembl Show fit	ribosomal protein L32
chr4_-_159399634 Show fit	0.03	ENSRNOT00000089193	Ndufa9 Links NCBI RGD Ensembl Show fit	NADH:ubiquinone oxidoreductase subunit A9
chr2_-_172361779 Show fit	0.03	ENSRNOT00000085876	Schip1 Links NCBI RGD Ensembl Show fit	schwannomin interacting protein 1
chr18_+_30527705 Show fit	0.03	ENSRNOT00000027168	Pcdhb14 Links NCBI RGD Ensembl Show fit	protocadherin beta 14
chrM_+_5323 Show fit	0.03	ENSRNOT00000050156	Mt-co1 Links NCBI RGD Ensembl Show fit	mitochondrially encoded cytochrome c oxidase 1
chr2_-_234296145 Show fit	0.03	ENSRNOT00000014155	Elovl6 Links NCBI RGD Ensembl Show fit	ELOVL fatty acid elongase 6
chr1_-_241460868 Show fit	0.03	ENSRNOT00000054776	RGD1560242 Links NCBI RGD Ensembl Show fit	similar to RIKEN cDNA 1700028P14
chr8_-_6034142 Show fit	0.03	ENSRNOT00000014560	Birc2 Links NCBI RGD Ensembl Show fit	baculoviral IAP repeat-containing 2
chr4_+_168142271 Show fit	0.03	ENSRNOT00000032229	Bcl2l14 Links NCBI RGD Ensembl Show fit	BCL2 like 14
chr5_-_16747222 Show fit	0.03	ENSRNOT00000011602	Mos Links NCBI RGD Ensembl Show fit	Moloney sarcoma oncogene
chrX_-_104984341 Show fit	0.02	ENSRNOT00000077996	Xkrx Links NCBI RGD Ensembl Show fit	XK related, X-linked
chr15_-_18632536 Show fit	0.02	ENSRNOT00000061123	Rpp14 Links NCBI RGD Ensembl Show fit	ribonuclease P/MRP 14 subunit
chr2_-_233743866 Show fit	0.02	ENSRNOT00000087062	Enpep Links NCBI RGD Ensembl Show fit	glutamyl aminopeptidase
chr8_-_73194837 Show fit	0.02	ENSRNOT00000024885 ENSRNOT00000081450 ENSRNOT00000064613	Tln2 Links NCBI RGD Ensembl Show fit	talin 2
chr1_+_259958310 Show fit	0.02	ENSRNOT00000019751	LOC103689954 Links NCBI RGD Ensembl Show fit	ectonucleoside triphosphate diphosphohydrolase 1
chr17_-_77527894 Show fit	0.02	ENSRNOT00000032173	Bend7 Links NCBI RGD Ensembl Show fit	BEN domain containing 7
chrX_+_53053609 Show fit	0.02	ENSRNOT00000058357	Dmd Links NCBI RGD Ensembl Show fit	dystrophin
chr10_-_91581232 Show fit	0.02	ENSRNOT00000066453 ENSRNOT00000068686	AABR07030520.1 Links NCBI RGD Ensembl Show fit
chr3_-_2832697 Show fit	0.02	ENSRNOT00000065410	Rabl6 Links NCBI RGD Ensembl Show fit	RAB, member RAS oncogene family-like 6
chr15_+_33108671 Show fit	0.02	ENSRNOT00000015468	Lrp10 Links NCBI RGD Ensembl Show fit	LDL receptor related protein 10
chr12_-_30083824 Show fit	0.02	ENSRNOT00000084968	Tpst1 Links NCBI RGD Ensembl Show fit	tyrosylprotein sulfotransferase 1
chr20_-_18060661 Show fit	0.02	ENSRNOT00000070925	AABR07044711.1 Links NCBI RGD Ensembl Show fit
chr8_+_117282390 Show fit	0.02	ENSRNOT00000074772	Usp19 Links NCBI RGD Ensembl Show fit	ubiquitin specific peptidase 19
chr10_-_87407634 Show fit	0.02	ENSRNOT00000016657	Krt23 Links NCBI RGD Ensembl Show fit	keratin 23
chr12_+_29921443 Show fit	0.02	ENSRNOT00000001190	Sbds Links NCBI RGD Ensembl Show fit	SBDS ribosome assembly guanine nucleotide exchange factor
chr7_+_93975451 Show fit	0.02	ENSRNOT00000011379	Colec10 Links NCBI RGD Ensembl Show fit	collectin subfamily member 10
chr1_+_244630377 Show fit	0.01	ENSRNOT00000016740	Smarca2 Links NCBI RGD Ensembl Show fit	SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2
chr2_-_244370983 Show fit	0.01	ENSRNOT00000021458	Rap1gds1 Links NCBI RGD Ensembl Show fit	Rap1 GTPase-GDP dissociation stimulator 1
chr9_+_65177511 Show fit	0.01	ENSRNOT00000048027	Aox2 Links NCBI RGD Ensembl Show fit	aldehyde oxidase 2
chr1_+_154606490 Show fit	0.01	ENSRNOT00000024095	Ccdc89 Links NCBI RGD Ensembl Show fit	coiled-coil domain containing 89
chr4_-_9921610 Show fit	0.01	ENSRNOT00000017018	Pmpcb Links NCBI RGD Ensembl Show fit	peptidase, mitochondrial processing beta subunit
chr5_-_169160987 Show fit	0.01	ENSRNOT00000055487	Thap3 Links NCBI RGD Ensembl Show fit	THAP domain containing 3
chr3_-_112061796 Show fit	0.01	ENSRNOT00000056258	Pla2g4d Links NCBI RGD Ensembl Show fit	phospholipase A2 group IVD
chr7_-_66172360 Show fit	0.01	ENSRNOT00000005537	Fam19a2 Links NCBI RGD Ensembl Show fit	family with sequence similarity 19 member A2, C-C motif chemokine like
chr4_-_115239723 Show fit	0.01	ENSRNOT00000042699	Actg2 Links NCBI RGD Ensembl Show fit	actin, gamma 2, smooth muscle, enteric
chr3_-_160038078 Show fit	0.01	ENSRNOT00000013445	Serinc3 Links NCBI RGD Ensembl Show fit	serine incorporator 3
chr4_-_77747070 Show fit	0.01	ENSRNOT00000009247	Zfp746 Links NCBI RGD Ensembl Show fit	zinc finger protein 746
chr6_+_76677213 Show fit	0.01	ENSRNOT00000076760	Brms1l Links NCBI RGD Ensembl Show fit	breast cancer metastasis-suppressor 1-like
chr4_+_163293724 Show fit	0.01	ENSRNOT00000077356	Gabarapl1 Links NCBI RGD Ensembl Show fit	GABA type A receptor associated protein like 1
chr12_-_51965779 Show fit	0.01	ENSRNOT00000056733	LOC100362927 Links NCBI RGD Ensembl Show fit	replication protein A3-like
chr5_-_102786331 Show fit	0.01	ENSRNOT00000086635	Bnc2 Links NCBI RGD Ensembl Show fit	basonuclin 2
chr4_+_161720501 Show fit	0.01	ENSRNOT00000008196 ENSRNOT00000055886	Nrip2 Links NCBI RGD Ensembl Show fit	nuclear receptor interacting protein 2
chr5_-_136098013 Show fit	0.01	ENSRNOT00000089166	RGD1563714 Links NCBI RGD Ensembl Show fit	RGD1563714
chr13_+_82479998 Show fit	0.01	ENSRNOT00000079872	F5 Links NCBI RGD Ensembl Show fit	coagulation factor V
chr8_-_122311431 Show fit	0.00	ENSRNOT00000033126	Fbxl2 Links NCBI RGD Ensembl Show fit	F-box and leucine-rich repeat protein 2
chr10_-_14072230 Show fit	0.00	ENSRNOT00000018405	Tbl3 Links NCBI RGD Ensembl Show fit	transducin (beta)-like 3
chr19_+_15081590 Show fit	0.00	ENSRNOT00000024187	Ces1f Links NCBI RGD Ensembl Show fit	carboxylesterase 1F

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.4	2.0	GO:0032227	negative regulation of synaptic transmission, dopaminergic(GO:0032227)
0.3	1.0	GO:0046462	monoacylglycerol metabolic process(GO:0046462) monoacylglycerol catabolic process(GO:0052651)
0.0	0.7	GO:0046884	thyroid hormone generation(GO:0006590) follicle-stimulating hormone secretion(GO:0046884)
0.0	0.1	GO:0070173	regulation of enamel mineralization(GO:0070173)
0.0	0.1	GO:0032218	riboflavin transport(GO:0032218)
0.0	0.1	GO:0051140	regulation of NK T cell proliferation(GO:0051140) positive regulation of NK T cell proliferation(GO:0051142)
0.0	0.2	GO:0045647	negative regulation of erythrocyte differentiation(GO:0045647)
0.0	0.0	GO:0000738	DNA catabolic process, exonucleolytic(GO:0000738)
0.0	0.2	GO:0000185	activation of MAPKKK activity(GO:0000185)
0.0	0.1	GO:0060005	vestibular reflex(GO:0060005)
0.0	0.0	GO:1904844	response to L-glutamine(GO:1904844) cellular response to L-glutamine(GO:1904845)
0.0	0.1	GO:0010839	negative regulation of keratinocyte proliferation(GO:0010839)
0.0	0.1	GO:0034625	fatty acid elongation, monounsaturated fatty acid(GO:0034625)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0005683	U7 snRNP(GO:0005683)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	1.0	GO:0047372	acylglycerol lipase activity(GO:0047372)
0.1	2.0	GO:0071855	neuropeptide receptor binding(GO:0071855)
0.0	0.2	GO:0008889	glycerophosphodiester phosphodiesterase activity(GO:0008889)
0.0	0.1	GO:0032217	riboflavin transporter activity(GO:0032217)
0.0	0.1	GO:0008597	calcium-dependent protein serine/threonine phosphatase regulator activity(GO:0008597)
0.0	0.1	GO:1990446	U1 snRNP binding(GO:1990446)
0.0	0.0	GO:0055100	adiponectin binding(GO:0055100)

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.1	0.7	REACTOME GLYCOPROTEIN HORMONES	Genes involved in Glycoprotein hormones
0.0	2.0	REACTOME PEPTIDE LIGAND BINDING RECEPTORS	Genes involved in Peptide ligand-binding receptors
0.0	0.1	REACTOME SLBP DEPENDENT PROCESSING OF REPLICATION DEPENDENT HISTONE PRE MRNAS	Genes involved in SLBP Dependent Processing of Replication-Dependent Histone Pre-mRNAs