GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Gsc2 Links NCBI RGD Ensembl	ENSRNOG00000000282	goosecoid homeobox 2
Dmbx1 Links NCBI RGD Ensembl	ENSRNOG00000010835	diencephalon/mesencephalon homeobox 1

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Gsc2	rn6_v1_chr11_+_87220618_87220618	-0.70	1.9e-01	Click!
Dmbx1	rn6_v1_chr5_-_134776247_134776247	-0.50	3.9e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr2_+_66940057 Show fit	0.10	ENSRNOT00000043050	Cdh9 Links NCBI RGD Ensembl Show fit	cadherin 9
chr1_-_219388009 Show fit	0.08	ENSRNOT00000001550	Cabp4 Links NCBI RGD Ensembl Show fit	calcium binding protein 4
chr8_+_55050284 Show fit	0.06	ENSRNOT00000013242	Pih1d2 Links NCBI RGD Ensembl Show fit	PIH1 domain containing 2
chr12_-_41448668 Show fit	0.05	ENSRNOT00000001856	Rasal1 Links NCBI RGD Ensembl Show fit	RAS protein activator like 1 (GAP1 like)
chrX_-_25628272 Show fit	0.05	ENSRNOT00000086414	Mid1 Links NCBI RGD Ensembl Show fit	midline 1
chr3_-_8659102 Show fit	0.05	ENSRNOT00000050908	Zdhhc12 Links NCBI RGD Ensembl Show fit	zinc finger, DHHC-type containing 12
chr7_-_143497108 Show fit	0.04	ENSRNOT00000048613	Krt76 Links NCBI RGD Ensembl Show fit	keratin 76
chr18_-_37096132 Show fit	0.04	ENSRNOT00000041188	Ppp2r2b Links NCBI RGD Ensembl Show fit	protein phosphatase 2, regulatory subunit B, beta
chr15_+_83707735 Show fit	0.04	ENSRNOT00000057843	Klf5 Links NCBI RGD Ensembl Show fit	Kruppel-like factor 5
chrM_+_8599 Show fit	0.03	ENSRNOT00000049683	Mt-cox3 Links NCBI RGD Ensembl Show fit	mitochondrially encoded cytochrome C oxidase III
chr5_+_138300107 Show fit	0.03	ENSRNOT00000047151	Cldn19 Links NCBI RGD Ensembl Show fit	claudin 19
chr2_-_48501436 Show fit	0.03	ENSRNOT00000017305	Isl1 Links NCBI RGD Ensembl Show fit	ISL LIM homeobox 1
chr4_-_30276372 Show fit	0.03	ENSRNOT00000011823	Pon1 Links NCBI RGD Ensembl Show fit	paraoxonase 1
chr3_-_113423149 Show fit	0.03	ENSRNOT00000021008	Serinc4 Links NCBI RGD Ensembl Show fit	serine incorporator 4
chr2_+_60966789 Show fit	0.03	ENSRNOT00000025490	Slc45a2 Links NCBI RGD Ensembl Show fit	solute carrier family 45, member 2
chr16_+_14306804 Show fit	0.03	ENSRNOT00000017773	Lrit1 Links NCBI RGD Ensembl Show fit	leucine-rich repeat, Ig-like and transmembrane domains 1
chr1_+_219481575 Show fit	0.03	ENSRNOT00000025507	Pold4 Links NCBI RGD Ensembl Show fit	DNA polymerase delta 4, accessory subunit
chr7_-_115969304 Show fit	0.02	ENSRNOT00000007958	Lypd2 Links NCBI RGD Ensembl Show fit	Ly6/Plaur domain containing 2
chr7_-_115969064 Show fit	0.02	ENSRNOT00000075999	Lypd2 Links NCBI RGD Ensembl Show fit	Ly6/Plaur domain containing 2
chr10_-_55560422 Show fit	0.02	ENSRNOT00000006883	Rangrf Links NCBI RGD Ensembl Show fit	RAN guanine nucleotide release factor
chr4_+_28972434 Show fit	0.02	ENSRNOT00000014219	Gngt1 Links NCBI RGD Ensembl Show fit	G protein subunit gamma transducin 1
chr11_+_87220618 Show fit	0.02	ENSRNOT00000041975	Gsc2 Links NCBI RGD Ensembl Show fit	goosecoid homeobox 2
chrM_+_7919 Show fit	0.02	ENSRNOT00000046108	Mt-atp6 Links NCBI RGD Ensembl Show fit	mitochondrially encoded ATP synthase 6
chr10_-_57121584 Show fit	0.02	ENSRNOT00000029421	Vmo1 Links NCBI RGD Ensembl Show fit	vitelline membrane outer layer 1 homolog
chr12_+_7081895 Show fit	0.02	ENSRNOT00000047163	Hmgb1 Links NCBI RGD Ensembl Show fit	high mobility group box 1
chr10_-_87195075 Show fit	0.02	ENSRNOT00000014851	Krt24 Links NCBI RGD Ensembl Show fit	keratin 24
chr10_+_45966926 Show fit	0.02	ENSRNOT00000067584	Olfr225 Links NCBI RGD Ensembl Show fit	olfactory receptor 225
chr17_-_53688966 Show fit	0.02	ENSRNOT00000078643	LOC100912163 Links NCBI RGD Ensembl Show fit	AT-rich interactive domain-containing protein 4B-like
chr6_-_115513354 Show fit	0.02	ENSRNOT00000005881	Ston2 Links NCBI RGD Ensembl Show fit	stonin 2
chr3_-_113423473 Show fit	0.02	ENSRNOT00000064982	Serinc4 Links NCBI RGD Ensembl Show fit	serine incorporator 4
chr10_+_104368247 Show fit	0.02	ENSRNOT00000006519	Llgl2 Links NCBI RGD Ensembl Show fit	LLGL2, scribble cell polarity complex component
chr1_+_124983452 Show fit	0.01	ENSRNOT00000021262	Trpm1 Links NCBI RGD Ensembl Show fit	transient receptor potential cation channel, subfamily M, member 1
chr16_+_81153489 Show fit	0.01	ENSRNOT00000024999	Grk1 Links NCBI RGD Ensembl Show fit	G protein-coupled receptor kinase 1
chr7_+_41475163 Show fit	0.01	ENSRNOT00000037844	Dusp6 Links NCBI RGD Ensembl Show fit	dual specificity phosphatase 6
chr3_+_91870208 Show fit	0.01	ENSRNOT00000040249	Rpl21 Links NCBI RGD Ensembl Show fit	ribosomal protein L21
chr11_-_70585053 Show fit	0.01	ENSRNOT00000086955	Zfp148 Links NCBI RGD Ensembl Show fit	zinc finger protein 148
chr2_-_45480798 Show fit	0.01	ENSRNOT00000066764	Snx18 Links NCBI RGD Ensembl Show fit	sorting nexin 18
chr5_+_98387291 Show fit	0.01	ENSRNOT00000046503	Tyrp1 Links NCBI RGD Ensembl Show fit	tyrosinase-related protein 1
chr4_-_29778039 Show fit	0.01	ENSRNOT00000074177	Sgce Links NCBI RGD Ensembl Show fit	sarcoglycan, epsilon
chr6_+_26780352 Show fit	0.01	ENSRNOT00000009916	Prr30 Links NCBI RGD Ensembl Show fit	proline rich 30
chr1_-_229601032 Show fit	0.01	ENSRNOT00000016690	Cntf Links NCBI RGD Ensembl Show fit	ciliary neurotrophic factor
chr20_-_3401273 Show fit	0.01	ENSRNOT00000089257 ENSRNOT00000078451 ENSRNOT00000001085	Nrm Links NCBI RGD Ensembl Show fit	nurim (nuclear envelope membrane protein)
chr7_-_49741540 Show fit	0.01	ENSRNOT00000006523	Myf6 Links NCBI RGD Ensembl Show fit	myogenic factor 6
chrX_+_105134498 Show fit	0.01	ENSRNOT00000002058	Tmem35 Links NCBI RGD Ensembl Show fit	transmembrane protein 35
chr4_-_56656980 Show fit	0.01	ENSRNOT00000009278	Opn1sw Links NCBI RGD Ensembl Show fit	opsin 1 (cone pigments), short-wave-sensitive
chr8_-_115140080 Show fit	0.01	ENSRNOT00000015851	Acy1 Links NCBI RGD Ensembl Show fit	aminoacylase 1
chr3_+_112242270 Show fit	0.01	ENSRNOT00000080533 ENSRNOT00000082876	Capn3 Links NCBI RGD Ensembl Show fit	calpain 3
chr1_-_24191908 Show fit	0.01	ENSRNOT00000061157	Sgk1 Links NCBI RGD Ensembl Show fit	serum/glucocorticoid regulated kinase 1
chr8_+_33514042 Show fit	0.01	ENSRNOT00000081614 ENSRNOT00000081525	Kcnj1 Links NCBI RGD Ensembl Show fit	potassium voltage-gated channel subfamily J member 1
chr18_+_56544652 Show fit	0.01	ENSRNOT00000024171	Pde6a Links NCBI RGD Ensembl Show fit	phosphodiesterase 6A
chr3_+_91191837 Show fit	0.01	ENSRNOT00000006097	Rag2 Links NCBI RGD Ensembl Show fit	recombination activating 2
chr11_-_35697072 Show fit	0.01	ENSRNOT00000039999	Erg Links NCBI RGD Ensembl Show fit	ERG, ETS transcription factor
chr18_-_74542077 Show fit	0.01	ENSRNOT00000078519	Slc14a2 Links NCBI RGD Ensembl Show fit	solute carrier family 14 member 2
chr5_+_57738321 Show fit	0.01	ENSRNOT00000063849	Ubap1 Links NCBI RGD Ensembl Show fit	ubiquitin-associated protein 1
chr2_-_250981623 Show fit	0.01	ENSRNOT00000018435	Clca2 Links NCBI RGD Ensembl Show fit	chloride channel accessory 2
chr20_-_5155293 Show fit	0.01	ENSRNOT00000092322	Prrc2a Links NCBI RGD Ensembl Show fit	proline-rich coiled-coil 2A
chr19_-_33080998 Show fit	0.01	ENSRNOT00000015985	Slc10a7 Links NCBI RGD Ensembl Show fit	solute carrier family 10, member 7
chr2_-_250805445 Show fit	0.01	ENSRNOT00000055362	Clca4l Links NCBI RGD Ensembl Show fit	chloride channel calcium activated 4-like
chr1_-_256734719 Show fit	0.01	ENSRNOT00000021546 ENSRNOT00000089456	Myof Links NCBI RGD Ensembl Show fit	myoferlin
chrX_+_124894706 Show fit	0.01	ENSRNOT00000066677	Mcts1 Links NCBI RGD Ensembl Show fit	MCTS1, re-initiation and release factor
chr8_-_114617466 Show fit	0.00	ENSRNOT00000082992 ENSRNOT00000038160	Col6a5 Links NCBI RGD Ensembl Show fit	collagen type VI alpha 5 chain
chrX_+_105402867 Show fit	0.00	ENSRNOT00000057222	Rpl36a Links NCBI RGD Ensembl Show fit	ribosomal protein L36a
chr19_-_38120578 Show fit	0.00	ENSRNOT00000026873	Esrp2 Links NCBI RGD Ensembl Show fit	epithelial splicing regulatory protein 2
chr15_+_3938075 Show fit	0.00	ENSRNOT00000065644	Camk2g Links NCBI RGD Ensembl Show fit	calcium/calmodulin-dependent protein kinase II gamma
chr5_-_115387377 Show fit	0.00	ENSRNOT00000036030 ENSRNOT00000077492	RGD1560146 Links NCBI RGD Ensembl Show fit	similar to hypothetical protein MGC34837
chr4_+_151298548 Show fit	0.00	ENSRNOT00000010746	Cacna2d4 Links NCBI RGD Ensembl Show fit	calcium voltage-gated channel auxiliary subunit alpha2delta 4

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0008594	photoreceptor cell morphogenesis(GO:0008594)