GSE49485: Hypoxia transcriptome sequencing of rat brain.

• Motif significance table
• Sample table
• Mean activities
• All promoters sorted by FOV

• Activity table
• Activity delta table
• Regulatory interactions
• Motifs sorted by significance
• Expression table
• Download the whole report

Gene Symbol	Gene ID	Gene Info
Hivep1 Links NCBI RGD Ensembl	ENSRNOG00000014460	human immunodeficiency virus type I enhancer binding protein 1

Gene	Promoter	Pearson corr. coef.	P-value	Plot
Hivep1	rn6_v1_chr17_-_22311392_22311392	-0.30	6.2e-01	Click!

Promoter	Log-likelihood	Transcript	Gene	Gene Info
chr6_-_76270457 Show fit	0.10	ENSRNOT00000009894	Nfkbia Links NCBI RGD Ensembl Show fit	NFKB inhibitor alpha
chr12_-_17186679 Show fit	0.10	ENSRNOT00000001730	Uncx Links NCBI RGD Ensembl Show fit	UNC homeobox
chrX_+_111122552 Show fit	0.05	ENSRNOT00000083566 ENSRNOT00000085078 ENSRNOT00000090928	Cldn2 Links NCBI RGD Ensembl Show fit	claudin 2
chr20_-_4921348 Show fit	0.05	ENSRNOT00000082497 ENSRNOT00000041151	RT1-CE4 Links NCBI RGD Ensembl Show fit	RT1 class I, locus CE4
chr12_+_24978483 Show fit	0.04	ENSRNOT00000040069	Eln Links NCBI RGD Ensembl Show fit	elastin
chr18_+_32273770 Show fit	0.03	ENSRNOT00000087408	Fgf1 Links NCBI RGD Ensembl Show fit	fibroblast growth factor 1
chr18_+_57011575 Show fit	0.03	ENSRNOT00000026679	Il17b Links NCBI RGD Ensembl Show fit	interleukin 17B
chr4_-_93406182 Show fit	0.03	ENSRNOT00000007437	AABR07060778.1 Links NCBI RGD Ensembl Show fit
chr14_-_18733391 Show fit	0.03	ENSRNOT00000003745	Cxcl2 Links NCBI RGD Ensembl Show fit	C-X-C motif chemokine ligand 2
chr20_-_4863011 Show fit	0.03	ENSRNOT00000079503	Ltb Links NCBI RGD Ensembl Show fit	lymphotoxin beta
chr13_+_111870121 Show fit	0.03	ENSRNOT00000007333	Irf6 Links NCBI RGD Ensembl Show fit	interferon regulatory factor 6
chr5_+_48011864 Show fit	0.03	ENSRNOT00000067610	Mdn1 Links NCBI RGD Ensembl Show fit	midasin AAA ATPase 1
chr3_-_176958880 Show fit	0.03	ENSRNOT00000078661	Zbtb46 Links NCBI RGD Ensembl Show fit	zinc finger and BTB domain containing 46
chr9_+_9842585 Show fit	0.03	ENSRNOT00000070806	Cd70 Links NCBI RGD Ensembl Show fit	Cd70 molecule
chr8_+_59900651 Show fit	0.02	ENSRNOT00000020410	Tmem266 Links NCBI RGD Ensembl Show fit	transmembrane protein 266
chr1_-_219745654 Show fit	0.02	ENSRNOT00000054848	LOC689065 Links NCBI RGD Ensembl Show fit	hypothetical protein LOC689065
chr20_+_5184515 Show fit	0.02	ENSRNOT00000089411	LOC103694381 Links NCBI RGD Ensembl Show fit	lymphotoxin-beta
chr1_-_167347662 Show fit	0.02	ENSRNOT00000027641 ENSRNOT00000076592	Rhog Links NCBI RGD Ensembl Show fit	ras homolog family member G
chr20_-_4863198 Show fit	0.02	ENSRNOT00000001108	Ltb Links NCBI RGD Ensembl Show fit	lymphotoxin beta
chr13_+_56096834 Show fit	0.02	ENSRNOT00000035129	Dennd1b Links NCBI RGD Ensembl Show fit	DENN domain containing 1B
chr3_-_7278758 Show fit	0.02	ENSRNOT00000017004	Spaca9 Links NCBI RGD Ensembl Show fit	sperm acrosome associated 9
chr4_-_115239723 Show fit	0.02	ENSRNOT00000042699	Actg2 Links NCBI RGD Ensembl Show fit	actin, gamma 2, smooth muscle, enteric
chr9_-_11114843 Show fit	0.02	ENSRNOT00000072031	Ebi3 Links NCBI RGD Ensembl Show fit	Epstein-Barr virus induced 3
chr1_-_252550394 Show fit	0.02	ENSRNOT00000083468	Acta2 Links NCBI RGD Ensembl Show fit	actin, alpha 2, smooth muscle, aorta
chr4_+_153217782 Show fit	0.02	ENSRNOT00000015499	Cecr2 Links NCBI RGD Ensembl Show fit	CECR2, histone acetyl-lysine reader
chr2_-_9023104 Show fit	0.02	ENSRNOT00000039652	Adgrv1 Links NCBI RGD Ensembl Show fit	adhesion G protein-coupled receptor V1
chr10_+_88764732 Show fit	0.02	ENSRNOT00000026662	Stat5a Links NCBI RGD Ensembl Show fit	signal transducer and activator of transcription 5A
chr4_-_163049084 Show fit	0.02	ENSRNOT00000091644	Cd69 Links NCBI RGD Ensembl Show fit	Cd69 molecule
chr2_+_60169517 Show fit	0.01	ENSRNOT00000080974	Prlr Links NCBI RGD Ensembl Show fit	prolactin receptor
chr1_+_86948918 Show fit	0.01	ENSRNOT00000084839	Sirt2 Links NCBI RGD Ensembl Show fit	sirtuin 2
chr5_+_98469047 Show fit	0.01	ENSRNOT00000041374	Lurap1l Links NCBI RGD Ensembl Show fit	leucine rich adaptor protein 1-like
chr4_-_7228675 Show fit	0.01	ENSRNOT00000064386	Agap3 Links NCBI RGD Ensembl Show fit	ArfGAP with GTPase domain, ankyrin repeat and PH domain 3
chr1_-_86948845 Show fit	0.01	ENSRNOT00000027212	Nfkbib Links NCBI RGD Ensembl Show fit	NFKB inhibitor beta
chr9_-_64096265 Show fit	0.01	ENSRNOT00000013502	Tyw5 Links NCBI RGD Ensembl Show fit	tRNA-yW synthesizing protein 5
chr7_+_144078496 Show fit	0.01	ENSRNOT00000055302	Pcbp2 Links NCBI RGD Ensembl Show fit	poly(rC) binding protein 2
chr4_-_145454834 Show fit	0.01	ENSRNOT00000013154 ENSRNOT00000056493	Prrt3 Links NCBI RGD Ensembl Show fit	proline-rich transmembrane protein 3
chr1_-_141471010 Show fit	0.01	ENSRNOT00000082164	Plin1 Links NCBI RGD Ensembl Show fit	perilipin 1
chr3_-_93216495 Show fit	0.01	ENSRNOT00000010580	Ehf Links NCBI RGD Ensembl Show fit	ets homologous factor
chr5_-_139749050 Show fit	0.01	ENSRNOT00000056651	Nfyc Links NCBI RGD Ensembl Show fit	nuclear transcription factor Y subunit gamma
chr20_+_2057689 Show fit	0.01	ENSRNOT00000086007	RT1-M6-1 Links NCBI RGD Ensembl Show fit	RT1 class I, locus M6, gene 1
chr16_-_50501921 Show fit	0.01	ENSRNOT00000081023	Fat1 Links NCBI RGD Ensembl Show fit	FAT atypical cadherin 1
chr3_+_138715570 Show fit	0.01	ENSRNOT00000064723	Sec23b Links NCBI RGD Ensembl Show fit	Sec23 homolog B, coat complex II component
chr1_+_166433109 Show fit	0.01	ENSRNOT00000026428	Stard10 Links NCBI RGD Ensembl Show fit	StAR-related lipid transfer domain containing 10
chr9_-_4447715 Show fit	0.01	ENSRNOT00000061882	Kat2b Links NCBI RGD Ensembl Show fit	lysine acetyltransferase 2B
chr10_+_86860685 Show fit	0.01	ENSRNOT00000084644	Rara Links NCBI RGD Ensembl Show fit	retinoic acid receptor, alpha
chr12_+_40553741 Show fit	0.01	ENSRNOT00000057396	LOC100360238 Links NCBI RGD Ensembl Show fit	rCG21419-like
chr13_+_112031594 Show fit	0.01	ENSRNOT00000008440	Lamb3 Links NCBI RGD Ensembl Show fit	laminin subunit beta 3
chr1_+_219764001 Show fit	0.01	ENSRNOT00000082388	Pc Links NCBI RGD Ensembl Show fit	pyruvate carboxylase
chr1_+_84470829 Show fit	0.01	ENSRNOT00000025472	Ttc9b Links NCBI RGD Ensembl Show fit	tetratricopeptide repeat domain 9B
chr17_+_5311274 Show fit	0.01	ENSRNOT00000067020	LOC102547665 Links NCBI RGD Ensembl Show fit	spermatogenesis-associated protein 31D1-like
chr20_-_4896970 Show fit	0.01	ENSRNOT00000061114 ENSRNOT00000060980	RT1-CE7 Links NCBI RGD Ensembl Show fit RT1-CE5 Links NCBI RGD Ensembl Show fit	RT1 class I, locus CE7 RT1 class I, locus CE5
chr10_+_63803309 Show fit	0.01	ENSRNOT00000036666	Myo1c Links NCBI RGD Ensembl Show fit	myosin 1C
chr20_+_2057878 Show fit	0.01	ENSRNOT00000051480	RT1-M6-1 Links NCBI RGD Ensembl Show fit	RT1 class I, locus M6, gene 1
chr4_-_157266018 Show fit	0.01	ENSRNOT00000019570	LOC100911713 Links NCBI RGD Ensembl Show fit	protein C10-like
chr4_+_153330069 Show fit	0.01	ENSRNOT00000015560	Slc25a18 Links NCBI RGD Ensembl Show fit	solute carrier family 25 member 18
chr6_-_33507542 Show fit	0.01	ENSRNOT00000007928	Gdf7 Links NCBI RGD Ensembl Show fit	growth differentiation factor 7
chr15_+_28377996 Show fit	0.01	ENSRNOT00000078475	Arhgef40 Links NCBI RGD Ensembl Show fit	Rho guanine nucleotide exchange factor 40
chr9_+_112360419 Show fit	0.01	ENSRNOT00000086682	Man2a1 Links NCBI RGD Ensembl Show fit	mannosidase, alpha, class 2A, member 1
chr20_+_3555135 Show fit	0.01	ENSRNOT00000085380	Ddr1 Links NCBI RGD Ensembl Show fit	discoidin domain receptor tyrosine kinase 1
chr1_-_87777359 Show fit	0.01	ENSRNOT00000074090	AABR07002870.1 Links NCBI RGD Ensembl Show fit
chr17_+_11101306 Show fit	0.01	ENSRNOT00000030893	Drd1 Links NCBI RGD Ensembl Show fit	dopamine receptor D1
chr20_-_4698718 Show fit	0.01	ENSRNOT00000047527	RT1-CE7 Links NCBI RGD Ensembl Show fit	RT1 class I, locus CE7
chr5_+_168019058 Show fit	0.01	ENSRNOT00000077202	Tnfrsf9 Links NCBI RGD Ensembl Show fit	TNF receptor superfamily member 9
chr1_-_183630695 Show fit	0.01	ENSRNOT00000036330	AABR07005506.1 Links NCBI RGD Ensembl Show fit
chr18_-_62476700 Show fit	0.01	ENSRNOT00000048429	Cycs Links NCBI RGD Ensembl Show fit	cytochrome c, somatic
chr1_+_164502389 Show fit	0.01	ENSRNOT00000043554	Arrb1 Links NCBI RGD Ensembl Show fit	arrestin, beta 1
chr1_+_252589785 Show fit	0.01	ENSRNOT00000025928	Fas Links NCBI RGD Ensembl Show fit	Fas cell surface death receptor
chr10_-_36502313 Show fit	0.01	ENSRNOT00000041273	LOC679794 Links NCBI RGD Ensembl Show fit	similar to Cytochrome c, somatic
chr20_-_3796258 Show fit	0.01	ENSRNOT00000048076 ENSRNOT00000044520	RT1-CE16 Links NCBI RGD Ensembl Show fit	RT1 class I, locus CE16
chr3_+_95233874 Show fit	0.01	ENSRNOT00000079743	LOC691083 Links NCBI RGD Ensembl Show fit	hypothetical protein LOC691083
chr7_+_116745061 Show fit	0.01	ENSRNOT00000076174	Rhpn1 Links NCBI RGD Ensembl Show fit	rhophilin, Rho GTPase binding protein 1
chr1_-_220136470 Show fit	0.01	ENSRNOT00000026812	Actn3 Links NCBI RGD Ensembl Show fit	actinin alpha 3
chr4_+_78080310 Show fit	0.01	ENSRNOT00000035906	Sspo Links NCBI RGD Ensembl Show fit	SCO-spondin
chr1_+_199217016 Show fit	0.01	ENSRNOT00000025732	Orai3 Links NCBI RGD Ensembl Show fit	ORAI calcium release-activated calcium modulator 3
chr8_-_127782070 Show fit	0.00	ENSRNOT00000045493	Plcd1 Links NCBI RGD Ensembl Show fit	phospholipase C, delta 1
chrX_+_122724129 Show fit	0.00	ENSRNOT00000017746	LOC100360218 Links NCBI RGD Ensembl Show fit	interleukin 13 receptor, alpha 1-like
chr5_+_25146949 Show fit	0.00	ENSRNOT00000061370	Rad54b Links NCBI RGD Ensembl Show fit	RAD54 homolog B (S. cerevisiae)
chr18_+_80939875 Show fit	0.00	ENSRNOT00000021729	Zadh2 Links NCBI RGD Ensembl Show fit	zinc binding alcohol dehydrogenase, domain containing 2
chr4_+_71790701 Show fit	0.00	ENSRNOT00000085902	Tas2r143 Links NCBI RGD Ensembl Show fit	taste receptor, type 2, member 143
chr17_+_88963981 Show fit	0.00	ENSRNOT00000025053	Myo3a Links NCBI RGD Ensembl Show fit	myosin IIIA
chr8_-_39093277 Show fit	0.00	ENSRNOT00000043344	LOC100911068 Links NCBI RGD Ensembl Show fit	roundabout homolog 4-like
chr5_+_133864798 Show fit	0.00	ENSRNOT00000091977	Tal1 Links NCBI RGD Ensembl Show fit	TAL bHLH transcription factor 1, erythroid differentiation factor
chr20_-_157665 Show fit	0.00	ENSRNOT00000048858 ENSRNOT00000079494	RT1-CE10 Links NCBI RGD Ensembl Show fit	RT1 class I, locus CE10
chr10_-_72196437 Show fit	0.00	ENSRNOT00000029769	Pigw Links NCBI RGD Ensembl Show fit	phosphatidylinositol glycan anchor biosynthesis, class W
chr10_-_88645364 Show fit	0.00	ENSRNOT00000030344	Rab5c Links NCBI RGD Ensembl Show fit	RAB5C, member RAS oncogene family
chr14_+_43810119 Show fit	0.00	ENSRNOT00000003327	Rbm47 Links NCBI RGD Ensembl Show fit	RNA binding motif protein 47
chr9_-_93607087 Show fit	0.00	ENSRNOT00000025262	Pde6d Links NCBI RGD Ensembl Show fit	phosphodiesterase 6D
chr12_-_22680630 Show fit	0.00	ENSRNOT00000041808	Vgf Links NCBI RGD Ensembl Show fit	VGF nerve growth factor inducible
chr7_-_125795980 Show fit	0.00	ENSRNOT00000017420	Arhgap8 Links NCBI RGD Ensembl Show fit	Rho GTPase activating protein 8
chr15_+_34552410 Show fit	0.00	ENSRNOT00000027802	Khnyn Links NCBI RGD Ensembl Show fit	KH and NYN domain containing
chr5_-_107858104 Show fit	0.00	ENSRNOT00000092196	Cdkn2b Links NCBI RGD Ensembl Show fit	cyclin-dependent kinase inhibitor 2B
chrX_+_43831892 Show fit	0.00	ENSRNOT00000005120	Myl6b Links NCBI RGD Ensembl Show fit	myosin light chain 6B
chr3_+_137618898 Show fit	0.00	ENSRNOT00000007249	Pcsk2 Links NCBI RGD Ensembl Show fit	proprotein convertase subtilisin/kexin type 2
chr2_+_188253378 Show fit	0.00	ENSRNOT00000085690	Ash1l Links NCBI RGD Ensembl Show fit	ASH1 like histone lysine methyltransferase
chr8_-_77398156 Show fit	0.00	ENSRNOT00000091858 ENSRNOT00000085349 ENSRNOT00000082763	Lipc Links NCBI RGD Ensembl Show fit	lipase C, hepatic type
chr18_-_32207749 Show fit	0.00	ENSRNOT00000090882 ENSRNOT00000018843	Arhgap26 Links NCBI RGD Ensembl Show fit	Rho GTPase activating protein 26
chr17_+_77167740 Show fit	0.00	ENSRNOT00000042881	Optn Links NCBI RGD Ensembl Show fit	optineurin
chr10_-_43931094 Show fit	0.00	ENSRNOT00000039778	Olr1415 Links NCBI RGD Ensembl Show fit	olfactory receptor 1415
chr2_-_142885604 Show fit	0.00	ENSRNOT00000031487	Frem2 Links NCBI RGD Ensembl Show fit	Fras1 related extracellular matrix protein 2
chr2_-_187372652 Show fit	0.00	ENSRNOT00000025496 ENSRNOT00000083116	Bcan Links NCBI RGD Ensembl Show fit	brevican
chr6_-_128727374 Show fit	0.00	ENSRNOT00000082152	Syne3 Links NCBI RGD Ensembl Show fit	spectrin repeat containing, nuclear envelope family member 3
chr10_+_57278307 Show fit	0.00	ENSRNOT00000005612	Eno3 Links NCBI RGD Ensembl Show fit	enolase 3
chr2_-_102871257 Show fit	0.00	ENSRNOT00000013116	Cyp7b1 Links NCBI RGD Ensembl Show fit	cytochrome P450, family 7, subfamily b, polypeptide 1
chr7_+_14529482 Show fit	0.00	ENSRNOT00000090844 ENSRNOT00000060284 ENSRNOT00000093239	Cyp4f5 Links NCBI RGD Ensembl Show fit Cyp4f17 Links NCBI RGD Ensembl Show fit	cytochrome P450, family 4, subfamily f, polypeptide 5 cytochrome P450, family 4, subfamily f, polypeptide 17
chr8_-_119265157 Show fit	0.00	ENSRNOT00000056100	Rtp3 Links NCBI RGD Ensembl Show fit	receptor (chemosensory) transporter protein 3

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Gene overrepresentation in biological process category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0070427	nucleotide-binding oligomerization domain containing 1 signaling pathway(GO:0070427)
0.0	0.0	GO:0071298	cellular response to L-ascorbic acid(GO:0071298)
0.0	0.1	GO:0035726	common myeloid progenitor cell proliferation(GO:0035726)

Gene overrepresentation in cellular component category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.1	GO:0033256	I-kappaB/NF-kappaB complex(GO:0033256)

Gene overrepresentation in molecular function category:

Log-likelihood per target	Total log-likelihood	Term	Description
0.0	0.0	GO:0030023	extracellular matrix constituent conferring elasticity(GO:0030023)
0.0	0.1	GO:0043120	tumor necrosis factor binding(GO:0043120)