GSE49485: Hypoxia transcriptome sequencing of rat brain.
Gene Symbol | Gene ID | Gene Info |
---|---|---|
Hmbox1
|
ENSRNOG00000013326 | homeobox containing 1 |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
Hmbox1 | rn6_v1_chr15_-_48284548_48284548 | 0.77 | 1.2e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
chr10_+_106712127 | 0.08 |
ENSRNOT00000040629
|
Tnrc6c
|
trinucleotide repeat containing 6C |
chr10_-_65200109 | 0.07 |
ENSRNOT00000030501
|
Nufip2
|
NUFIP2, FMR1 interacting protein 2 |
chr8_+_29453643 | 0.06 |
ENSRNOT00000090643
|
Opcml
|
opioid binding protein/cell adhesion molecule-like |
chr2_-_157058194 | 0.06 |
ENSRNOT00000076409
|
Rn50_2_1765.1
|
|
chr1_+_213583606 | 0.06 |
ENSRNOT00000088899
|
AC109844.1
|
|
chr20_-_2678141 | 0.05 |
ENSRNOT00000072377
ENSRNOT00000083833 |
C4a
|
complement component 4A (Rodgers blood group) |
chr3_+_101010899 | 0.05 |
ENSRNOT00000073258
|
Lin7c
|
lin-7 homolog C, crumbs cell polarity complex component |
chr1_+_141767940 | 0.05 |
ENSRNOT00000064034
|
Zfp710
|
zinc finger protein 710 |
chr20_-_4508197 | 0.05 |
ENSRNOT00000086027
ENSRNOT00000000514 |
C4a
|
complement component 4A (Rodgers blood group) |
chr9_+_121831716 | 0.05 |
ENSRNOT00000056250
ENSRNOT00000056251 |
Yes1
|
YES proto-oncogene 1, Src family tyrosine kinase |
chr1_-_71173216 | 0.04 |
ENSRNOT00000020523
|
Zfp28
|
zinc finger protein 28 |
chr5_+_169288871 | 0.04 |
ENSRNOT00000055466
|
Tnfrsf25
|
TNF receptor superfamily member 25 |
chr6_-_54059119 | 0.04 |
ENSRNOT00000005521
|
Hdac9
|
histone deacetylase 9 |
chr20_+_44220840 | 0.04 |
ENSRNOT00000047194
|
Tube1
|
tubulin, epsilon 1 |
chr1_+_219964429 | 0.04 |
ENSRNOT00000088288
|
Sptbn2
|
spectrin, beta, non-erythrocytic 2 |
chr6_+_106052212 | 0.04 |
ENSRNOT00000010626
|
Sipa1l1
|
signal-induced proliferation-associated 1 like 1 |
chr4_-_157704596 | 0.04 |
ENSRNOT00000083016
|
Ncapd2
|
non-SMC condensin I complex, subunit D2 |
chr4_-_126644895 | 0.04 |
ENSRNOT00000017384
ENSRNOT00000072624 |
Lrig1
|
leucine-rich repeats and immunoglobulin-like domains 1 |
chr18_-_57866741 | 0.04 |
ENSRNOT00000025790
|
Fbxo38
|
F-box protein 38 |
chr6_-_15191660 | 0.04 |
ENSRNOT00000092654
|
Nrxn1
|
neurexin 1 |
chr14_-_114484127 | 0.04 |
ENSRNOT00000056706
|
Eml6
|
echinoderm microtubule associated protein like 6 |
chr6_-_115513354 | 0.03 |
ENSRNOT00000005881
|
Ston2
|
stonin 2 |
chr15_-_77736892 | 0.03 |
ENSRNOT00000057924
|
Pcdh9
|
protocadherin 9 |
chr3_+_95711555 | 0.03 |
ENSRNOT00000006302
|
Pax6
|
paired box 6 |
chr8_-_114010277 | 0.03 |
ENSRNOT00000045087
|
Atp2c1
|
ATPase secretory pathway Ca2+ transporting 1 |
chr4_+_152430187 | 0.03 |
ENSRNOT00000084520
|
Rad52
|
RAD52 homolog, DNA repair protein |
chr1_-_204087001 | 0.03 |
ENSRNOT00000051853
|
Cpxm2
|
carboxypeptidase X (M14 family), member 2 |
chr8_-_71337746 | 0.03 |
ENSRNOT00000021554
|
Zfp609
|
zinc finger protein 609 |
chr15_-_61648267 | 0.03 |
ENSRNOT00000071805
|
Naa16
|
N(alpha)-acetyltransferase 16, NatA auxiliary subunit |
chrX_+_124321551 | 0.03 |
ENSRNOT00000074486
|
LOC100910807
|
transcriptional regulator Kaiso-like |
chr3_+_8873933 | 0.03 |
ENSRNOT00000030996
|
Nup188
|
nucleoporin 188 |
chr4_-_118578815 | 0.03 |
ENSRNOT00000080502
|
Anxa4
|
annexin A4 |
chr8_+_116343096 | 0.03 |
ENSRNOT00000022092
|
Ifrd2
|
interferon-related developmental regulator 2 |
chr17_-_55300998 | 0.03 |
ENSRNOT00000064331
|
Svil
|
supervillin |
chr2_+_30664639 | 0.03 |
ENSRNOT00000076372
ENSRNOT00000076294 ENSRNOT00000076434 ENSRNOT00000076484 |
Taf9
|
TATA-box binding protein associated factor 9 |
chr6_-_55001464 | 0.03 |
ENSRNOT00000006618
|
Ahr
|
aryl hydrocarbon receptor |
chr2_-_211690716 | 0.03 |
ENSRNOT00000027690
|
Fndc7
|
fibronectin type III domain containing 7 |
chr5_-_151113643 | 0.03 |
ENSRNOT00000077360
|
Fam76a
|
family with sequence similarity 76, member A |
chr1_-_13915594 | 0.03 |
ENSRNOT00000015927
|
Arfgef3
|
ARFGEF family member 3 |
chr4_-_129544429 | 0.03 |
ENSRNOT00000091507
ENSRNOT00000083461 ENSRNOT00000087215 |
Tmf1
|
TATA element modulatory factor 1 |
chr5_+_169519212 | 0.03 |
ENSRNOT00000024732
|
Chd5
|
chromodomain helicase DNA binding protein 5 |
chr20_+_20236151 | 0.03 |
ENSRNOT00000079630
|
Ank3
|
ankyrin 3 |
chr2_-_165600748 | 0.03 |
ENSRNOT00000013216
|
Ift80
|
intraflagellar transport 80 |
chr10_-_82852660 | 0.03 |
ENSRNOT00000005641
|
Pdk2
|
pyruvate dehydrogenase kinase 2 |
chr18_-_1390190 | 0.03 |
ENSRNOT00000061777
|
Rock1
|
Rho-associated coiled-coil containing protein kinase 1 |
chr18_-_1389929 | 0.03 |
ENSRNOT00000051362
|
Rock1
|
Rho-associated coiled-coil containing protein kinase 1 |
chr10_+_70629250 | 0.02 |
ENSRNOT00000013687
|
Rasl10b
|
RAS-like, family 10, member B |
chr8_-_8524643 | 0.02 |
ENSRNOT00000009418
|
Cntn5
|
contactin 5 |
chr8_-_73122740 | 0.02 |
ENSRNOT00000012026
|
Tln2
|
talin 2 |
chr13_+_90244681 | 0.02 |
ENSRNOT00000078162
|
Cd84
|
CD84 molecule |
chr6_-_131648661 | 0.02 |
ENSRNOT00000057179
|
LOC100910833
|
histone-lysine N-methyltransferase setd3-like |
chr19_-_37303788 | 0.02 |
ENSRNOT00000084734
|
Fhod1
|
formin homology 2 domain containing 1 |
chr14_+_39964588 | 0.02 |
ENSRNOT00000003240
|
Gabrg1
|
gamma-aminobutyric acid type A receptor gamma 1 subunit |
chr3_+_38559914 | 0.02 |
ENSRNOT00000085545
|
Fmnl2
|
formin-like 2 |
chr8_-_84506328 | 0.02 |
ENSRNOT00000064754
|
Mlip
|
muscular LMNA-interacting protein |
chr13_-_89594738 | 0.02 |
ENSRNOT00000004641
|
Tomm40l
|
translocase of outer mitochondrial membrane 40 like |
chr10_-_52290657 | 0.02 |
ENSRNOT00000005293
|
Map2k4
|
mitogen activated protein kinase kinase 4 |
chr14_+_106153575 | 0.02 |
ENSRNOT00000010264
|
Vps54
|
VPS54 GARP complex subunit |
chr5_+_118574801 | 0.02 |
ENSRNOT00000035949
|
Ube2u
|
ubiquitin-conjugating enzyme E2U (putative) |
chr15_-_93667116 | 0.02 |
ENSRNOT00000093184
|
Fbxl3
|
F-box and leucine-rich repeat protein 3 |
chr2_+_250995517 | 0.02 |
ENSRNOT00000018905
|
Odf2l
|
outer dense fiber of sperm tails 2-like |
chr15_-_37056892 | 0.02 |
ENSRNOT00000047731
|
Zmym5
|
zinc finger MYM-type containing 5 |
chr15_+_47470863 | 0.02 |
ENSRNOT00000072438
|
LOC683422
|
similar to Plasma kallikrein precursor (Plasma prekallikrein) (Kininogenin) (Fletcher factor) |
chr17_-_78499881 | 0.02 |
ENSRNOT00000079260
|
Fam107b
|
family with sequence similarity 107, member B |
chr7_-_143863186 | 0.02 |
ENSRNOT00000017096
|
Rarg
|
retinoic acid receptor, gamma |
chr10_-_56270640 | 0.02 |
ENSRNOT00000056918
|
Cd68
|
Cd68 molecule |
chr19_-_601469 | 0.02 |
ENSRNOT00000016462
|
Pdp2
|
pyruvate dehyrogenase phosphatase catalytic subunit 2 |
chr8_+_107882219 | 0.02 |
ENSRNOT00000019902
|
Dzip1l
|
DAZ interacting zinc finger protein 1-like |
chr18_+_30840868 | 0.02 |
ENSRNOT00000027026
|
Pcdhga5
|
protocadherin gamma subfamily A, 5 |
chr1_-_215284548 | 0.02 |
ENSRNOT00000090375
|
Cttn
|
cortactin |
chr20_-_4316715 | 0.02 |
ENSRNOT00000031704
|
C4b
|
complement C4B (Chido blood group) |
chr11_-_86276430 | 0.02 |
ENSRNOT00000075164
|
Hira
|
histone cell cycle regulator |
chr2_-_227582895 | 0.02 |
ENSRNOT00000020574
|
Mettl14
|
methyltransferase like 14 |
chr6_+_92229686 | 0.02 |
ENSRNOT00000046085
|
Atl1
|
atlastin GTPase 1 |
chr9_+_117538009 | 0.02 |
ENSRNOT00000022878
|
Epb41l3
|
erythrocyte membrane protein band 4.1-like 3 |
chr7_-_117880289 | 0.02 |
ENSRNOT00000052227
|
Arhgap39
|
Rho GTPase activating protein 39 |
chr16_+_82184387 | 0.02 |
ENSRNOT00000089329
ENSRNOT00000068416 |
Tubgcp3
|
tubulin, gamma complex associated protein 3 |
chr16_+_70644474 | 0.02 |
ENSRNOT00000045955
|
LOC100359503
|
ribosomal protein S28-like |
chr8_+_103673411 | 0.01 |
ENSRNOT00000049967
|
Atr
|
ATR serine/threonine kinase |
chr7_+_120106901 | 0.01 |
ENSRNOT00000063876
|
Gga1
|
golgi associated, gamma adaptin ear containing, ARF binding protein 1 |
chr12_+_19314251 | 0.01 |
ENSRNOT00000001827
|
Ap4m1
|
adaptor-related protein complex 4, mu 1 subunit |
chr13_+_80464348 | 0.01 |
ENSRNOT00000076324
|
Vamp4
|
vesicle-associated membrane protein 4 |
chr8_-_47404010 | 0.01 |
ENSRNOT00000038647
|
Tmem136
|
transmembrane protein 136 |
chr19_-_27464805 | 0.01 |
ENSRNOT00000039467
|
Orc6
|
origin recognition complex, subunit 6 |
chr14_+_4125380 | 0.01 |
ENSRNOT00000002882
|
Zfp644
|
zinc finger protein 644 |
chr15_+_34328851 | 0.01 |
ENSRNOT00000026819
|
Tssk4
|
testis-specific serine kinase 4 |
chr1_-_40921508 | 0.01 |
ENSRNOT00000026433
|
Zbtb2
|
zinc finger and BTB domain containing 2 |
chr6_-_75589257 | 0.01 |
ENSRNOT00000006030
|
Eapp
|
E2F-associated phosphoprotein |
chr8_+_42443442 | 0.01 |
ENSRNOT00000015986
|
Vwa5a
|
von Willebrand factor A domain containing 5A |
chr6_+_26686205 | 0.01 |
ENSRNOT00000082623
|
Slc5a6
|
solute carrier family 5 member 6 |
chr8_-_96516975 | 0.01 |
ENSRNOT00000067996
|
RGD1560775
|
similar to RIKEN cDNA 4930579C12 gene |
chr16_+_50016857 | 0.01 |
ENSRNOT00000035781
|
Tlr3
|
toll-like receptor 3 |
chr2_-_120316357 | 0.01 |
ENSRNOT00000065469
|
Ccdc39
|
coiled-coil domain containing 39 |
chr6_+_26686033 | 0.01 |
ENSRNOT00000081167
|
Slc5a6
|
solute carrier family 5 member 6 |
chr5_+_104394119 | 0.01 |
ENSRNOT00000093557
ENSRNOT00000093462 |
Adamtsl1
|
ADAMTS-like 1 |
chrX_+_106390759 | 0.01 |
ENSRNOT00000049375
|
Bhlhb9
|
basic helix-loop-helix domain containing, class B, 9 |
chr19_-_19913605 | 0.01 |
ENSRNOT00000020816
|
Cnep1r1
|
CTD nuclear envelope phosphatase 1 regulatory subunit 1 |
chrX_-_31799560 | 0.01 |
ENSRNOT00000044103
|
Piga
|
phosphatidylinositol glycan anchor biosynthesis, class A |
chr13_-_95250235 | 0.01 |
ENSRNOT00000085648
|
Akt3
|
AKT serine/threonine kinase 3 |
chr4_+_117780533 | 0.01 |
ENSRNOT00000021211
|
Tprkb
|
Tp53rk binding protein |
chr17_-_69711689 | 0.01 |
ENSRNOT00000041925
|
Akr1c12
|
aldo-keto reductase family 1, member C12 |
chr7_-_117257402 | 0.01 |
ENSRNOT00000081021
|
Plec
|
plectin |
chr13_-_48056394 | 0.01 |
ENSRNOT00000038151
|
Ikbke
|
inhibitor of kappa light polypeptide gene enhancer in B-cells, kinase epsilon |
chr18_-_58097316 | 0.01 |
ENSRNOT00000088527
|
AABR07032265.1
|
|
chrX_-_70461553 | 0.01 |
ENSRNOT00000076110
ENSRNOT00000003872 ENSRNOT00000076812 |
Pdzd11
|
PDZ domain containing 11 |
chr12_-_23021517 | 0.01 |
ENSRNOT00000041654
|
Myl10
|
myosin light chain 10 |
chr2_-_89498395 | 0.01 |
ENSRNOT00000068507
|
AABR07009224.1
|
|
chr1_-_211196868 | 0.01 |
ENSRNOT00000022714
|
Mapk1ip1
|
mitogen-activated protein kinase 1 interacting protein 1 |
chr4_-_8214555 | 0.01 |
ENSRNOT00000084050
ENSRNOT00000076642 |
Kmt2e
|
lysine methyltransferase 2E |
chr8_+_59769994 | 0.01 |
ENSRNOT00000020309
|
Fbxo22
|
F-box protein 22 |
chr5_+_172488708 | 0.01 |
ENSRNOT00000019930
|
Morn1
|
MORN repeat containing 1 |
chr2_+_165601007 | 0.01 |
ENSRNOT00000013931
|
Smc4
|
structural maintenance of chromosomes 4 |
chr20_-_50564987 | 0.00 |
ENSRNOT00000034485
ENSRNOT00000064466 |
Lin28b
|
lin-28 homolog B |
chr12_-_650376 | 0.00 |
ENSRNOT00000001468
|
N4bp2l2
|
NEDD4 binding protein 2-like 2 |
chrX_+_40460047 | 0.00 |
ENSRNOT00000010970
|
Phex
|
phosphate regulating endopeptidase homolog, X-linked |
chr3_-_13896838 | 0.00 |
ENSRNOT00000025399
|
Fbxw2
|
F-box and WD repeat domain containing 2 |
chr2_-_120316600 | 0.00 |
ENSRNOT00000084521
|
Ccdc39
|
coiled-coil domain containing 39 |
chr6_-_105261549 | 0.00 |
ENSRNOT00000009122
|
Synj2bp
|
synaptojanin 2 binding protein |
chr5_+_25168295 | 0.00 |
ENSRNOT00000020245
|
Fsbp
|
fibrinogen silencer binding protein |
chr2_+_256964860 | 0.00 |
ENSRNOT00000073547
|
Ifi44l
|
interferon-induced protein 44-like |
chr5_+_126976456 | 0.00 |
ENSRNOT00000014275
|
Ndc1
|
NDC1 transmembrane nucleoporin |
chr2_-_233743866 | 0.00 |
ENSRNOT00000087062
|
Enpep
|
glutamyl aminopeptidase |
chr13_-_78885464 | 0.00 |
ENSRNOT00000003828
|
Dars2
|
aspartyl-tRNA synthetase 2 (mitochondrial) |
chr7_-_119689938 | 0.00 |
ENSRNOT00000000200
|
Tmprss6
|
transmembrane protease, serine 6 |
chr16_+_6970342 | 0.00 |
ENSRNOT00000061294
ENSRNOT00000048344 |
Itih4
|
inter-alpha-trypsin inhibitor heavy chain family, member 4 |
chr8_-_106617597 | 0.00 |
ENSRNOT00000070953
|
Mrps22
|
mitochondrial ribosomal protein S22 |
chr12_-_19314016 | 0.00 |
ENSRNOT00000001825
|
Mcm7
|
minichromosome maintenance complex component 7 |
chr3_+_47439076 | 0.00 |
ENSRNOT00000011794
|
Tank
|
TRAF family member-associated NFKB activator |
chr7_+_94795214 | 0.00 |
ENSRNOT00000005722
|
Deptor
|
DEP domain containing MTOR-interacting protein |
chr18_+_29124428 | 0.00 |
ENSRNOT00000073131
|
Igip
|
IgA-inducing protein |
chr6_+_75996643 | 0.00 |
ENSRNOT00000052076
|
Srp54a
|
signal recognition particle 54A |
chr3_-_166994286 | 0.00 |
ENSRNOT00000081593
|
Zfp217
|
zinc finger protein 217 |
chr20_+_28078500 | 0.00 |
ENSRNOT00000030005
|
Ccdc138
|
coiled-coil domain containing 138 |
chr4_-_133131953 | 0.00 |
ENSRNOT00000089177
|
Shq1
|
SHQ1, H/ACA ribonucleoprotein assembly factor |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.0 | GO:0032474 | otolith morphogenesis(GO:0032474) |
0.0 | 0.0 | GO:0021917 | pancreatic A cell development(GO:0003322) forebrain-midbrain boundary formation(GO:0021905) somatic motor neuron fate commitment(GO:0021917) regulation of transcription from RNA polymerase II promoter involved in somatic motor neuron fate commitment(GO:0021918) sensory neuron migration(GO:1904937) |
0.0 | 0.0 | GO:0032472 | Golgi calcium ion transport(GO:0032472) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.1 | GO:0097025 | MPP7-DLG1-LIN7 complex(GO:0097025) |
0.0 | 0.0 | GO:0044611 | nuclear pore inner ring(GO:0044611) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.1 | GO:0097016 | L27 domain binding(GO:0097016) |